Wall clock time and date at job start Tue Mar 31 2020 11:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48496 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.00586 * 3 2 1 6 6 H 1.48501 * 109.46764 * 59.99906 * 3 2 1 7 7 C 1.38655 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99630 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00088 * 185.06091 * 9 7 2 11 11 C 1.38877 * 120.06848 * 354.46336 * 10 9 7 12 12 C 1.38097 * 119.93285 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.06636 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92886 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47250 * 89.99524 * 14 13 12 16 16 C 1.34771 * 120.00053 * 180.02562 * 15 14 13 17 17 O 1.21593 * 120.00128 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00497 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00350 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46989 * 179.97438 * 19 18 16 21 21 H 1.09004 * 110.43256 * 307.34596 * 20 19 18 22 22 C 1.51101 * 110.38697 * 69.69368 * 20 19 18 23 23 C 1.30532 * 111.10466 * 135.25206 * 22 20 19 24 24 C 1.51212 * 111.11146 * 359.97438 * 23 22 20 25 25 C 1.54637 * 110.38442 * 184.99769 * 20 19 18 26 26 C 1.38300 * 120.13900 * 0.26468 * 13 12 11 27 27 C 1.38103 * 120.06951 * 359.50022 * 26 13 12 28 28 H 0.96998 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.03438 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.96433 * 180.02562 * 12 11 10 31 31 H 1.09006 * 109.47068 * 329.99869 * 14 13 12 32 32 H 1.08993 * 109.47113 * 209.99745 * 14 13 12 33 33 H 0.96998 * 120.00194 * 359.97438 * 15 14 13 34 34 H 0.97001 * 119.99552 * 359.97438 * 18 16 15 35 35 H 1.08991 * 109.47545 * 59.99775 * 19 18 16 36 36 H 1.09002 * 109.46626 * 299.99137 * 19 18 16 37 37 H 1.08004 * 124.44868 * 315.26651 * 22 20 19 38 38 H 1.07997 * 124.44854 * 180.02562 * 23 22 20 39 39 H 1.08995 * 110.42458 * 224.75877 * 24 23 22 40 40 H 1.08997 * 110.39937 * 102.34907 * 24 23 22 41 41 H 1.08993 * 111.03761 * 334.58236 * 25 20 19 42 42 H 1.08997 * 111.03638 * 98.48415 * 25 20 19 43 43 H 1.08000 * 119.96482 * 179.72074 * 26 13 12 44 44 H 1.07994 * 120.03751 * 180.25099 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0922 12 6 4.2026 -4.5970 0.2009 13 6 3.5688 -5.8202 0.3236 14 6 4.3852 -7.0814 0.4414 15 7 4.6579 -7.3564 1.8543 16 6 5.3775 -8.4412 2.2030 17 8 5.8001 -9.1921 1.3449 18 7 5.6281 -8.6946 3.5028 19 6 6.4108 -9.8735 3.8818 20 6 6.5484 -9.9264 5.4047 21 1 6.9334 -8.9802 5.7850 22 6 5.2169 -10.2475 6.0427 23 6 5.3491 -11.1479 6.9785 24 6 6.7917 -11.5782 7.1204 25 6 7.4754 -11.0918 5.8216 26 6 2.1876 -5.8888 0.3323 27 6 1.4367 -4.7344 0.2289 28 1 -0.4850 0.8400 0.0004 29 1 3.9528 -2.4845 -0.0023 30 1 5.2814 -4.5469 0.1909 31 1 5.3271 -6.9558 -0.0926 32 1 3.8309 -7.9146 0.0095 33 1 4.3212 -6.7573 2.5388 34 1 5.2907 -8.0959 4.1874 35 1 7.4007 -9.8131 3.4298 36 1 5.9054 -10.7733 3.5309 37 1 4.2789 -9.7921 5.7612 38 1 4.5348 -11.5353 7.5728 39 1 6.8587 -12.6630 7.2021 40 1 7.2464 -11.1023 7.9892 41 1 7.4813 -11.8767 5.0655 42 1 8.4861 -10.7357 6.0209 43 1 1.6956 -6.8459 0.4237 44 1 0.3582 -4.7882 0.2398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883313200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:26 Heat of formation + Delta-G solvation = -22.131592 kcal Electronic energy + Delta-G solvation = -24453.541025 eV Core-core repulsion = 20757.547174 eV Total energy + Delta-G solvation = -3695.993850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13429 -39.23221 -38.87083 -36.90142 -34.75047 -34.28181 -32.37541 -30.59240 -30.26348 -29.53698 -28.99002 -25.95148 -24.98582 -23.85648 -22.05399 -21.27018 -20.69367 -20.59787 -19.07132 -18.40831 -18.06498 -17.08166 -16.60524 -16.30669 -15.61715 -15.31627 -14.77337 -14.69526 -14.46199 -14.29863 -13.87507 -13.76733 -13.66815 -13.33263 -12.80221 -12.76637 -12.41286 -12.29860 -12.26155 -12.07418 -11.69330 -11.65412 -11.56393 -11.39855 -11.29555 -10.98253 -10.77644 -10.68053 -10.48580 -10.15818 -9.42958 -9.32852 -9.26262 -8.92427 -8.72847 -8.28637 -7.33460 -6.53852 -4.12673 1.88259 2.03214 2.12857 2.87192 3.07925 3.08892 3.14475 3.28027 3.89561 4.14411 4.19443 4.34293 4.48168 4.58516 4.82114 4.95617 5.01178 5.09026 5.11760 5.16351 5.24789 5.34955 5.43454 5.45474 5.52864 5.60588 5.67351 5.70506 5.82629 5.87066 5.95123 6.12011 6.13699 6.35415 6.39076 6.49254 6.58601 6.62845 6.80212 6.90380 7.00187 7.15896 7.27893 7.34870 7.71307 7.91063 8.07162 8.65719 8.91648 9.60047 10.63758 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.001971 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.828042 B =14201.500566 C =14636.473588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.700 3.300 17 O -0.598 6.598 18 N -0.750 5.750 19 C 0.150 3.850 20 C -0.081 4.081 21 H 0.088 0.912 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.102 4.102 25 C -0.118 4.118 26 C -0.054 4.054 27 C -0.196 4.196 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -17.632 12.454 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.477 6.477 18 N -0.406 5.406 19 C 0.025 3.975 20 C -0.100 4.100 21 H 0.106 0.894 22 C -0.179 4.179 23 C -0.185 4.185 24 C -0.139 4.139 25 C -0.156 4.156 26 C -0.073 4.073 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.904 -18.109 11.592 24.577 hybrid contribution 0.009 1.508 0.675 1.652 sum 11.913 -16.601 12.267 23.833 Atomic orbital electron populations 1.70048 1.05997 1.27751 1.45573 1.25326 0.95870 0.98945 0.96385 0.85626 0.79148 0.80211 0.78330 1.19042 1.20066 1.20076 1.21403 0.91897 0.80716 1.52873 0.88865 1.83978 1.34515 1.11566 1.77596 1.19442 0.90319 0.88050 0.91615 1.21163 0.93774 0.98963 1.11759 1.20652 0.98400 0.91621 0.96236 1.19231 0.93556 0.93664 1.15039 1.19822 0.98229 0.94551 0.79897 1.45504 1.57404 1.26806 1.09612 1.16032 0.79368 0.81883 0.82706 1.90908 1.57647 1.49983 1.49168 1.45132 1.59688 1.29630 1.06151 1.21167 0.95668 0.87712 0.92922 1.21322 0.94223 1.00060 0.94349 0.89365 1.23282 0.97912 0.98967 0.97700 1.23321 0.97488 0.98708 0.98995 1.21392 0.93219 1.01196 0.98061 1.22466 0.98423 0.97304 0.97369 1.20542 0.92787 0.96817 0.97116 1.20220 0.99669 0.90260 1.11353 0.91935 0.85428 0.87382 0.91804 0.91762 0.76927 0.77102 0.91611 0.91570 0.85737 0.85871 0.91061 0.90655 0.90514 0.90540 0.86946 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.81 9.76 0.06 0.00 -4.81 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 14 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 15 N -0.74 -9.40 5.55 -66.41 -0.37 -9.77 16 16 C 0.70 9.59 8.57 -86.92 -0.74 8.85 16 17 O -0.60 -10.61 16.34 5.28 0.09 -10.52 16 18 N -0.75 -7.41 5.43 -65.23 -0.35 -7.76 16 19 C 0.15 1.34 4.99 -4.04 -0.02 1.32 16 20 C -0.08 -0.54 2.94 -90.71 -0.27 -0.81 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 22 C -0.16 -1.12 9.88 -35.70 -0.35 -1.47 16 23 C -0.17 -1.09 10.78 -35.64 -0.38 -1.47 16 24 C -0.10 -0.57 6.82 -26.78 -0.18 -0.75 16 25 C -0.12 -0.67 6.70 -25.02 -0.17 -0.84 16 26 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 27 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.40 4.40 8.48 -40.82 -0.35 4.06 16 34 H 0.40 2.96 8.42 -40.82 -0.34 2.62 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -32.04 372.78 -9.86 -41.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.29 Total: 8.65 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.28 Total: -14.41 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.04 Total: -41.39 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.04 -9.86 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.770 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds