Wall clock time and date at job start Tue Mar 31 2020 11:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48496 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.00586 * 3 2 1 6 6 H 1.48501 * 109.46764 * 59.99906 * 3 2 1 7 7 C 1.38655 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99630 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00088 * 185.06091 * 9 7 2 11 11 C 1.38877 * 120.06848 * 354.46336 * 10 9 7 12 12 C 1.38097 * 119.93285 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.06636 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92886 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47250 * 89.99524 * 14 13 12 16 16 C 1.34771 * 120.00053 * 180.02562 * 15 14 13 17 17 O 1.21593 * 120.00128 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00497 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00350 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46989 * 179.97438 * 19 18 16 21 21 H 1.09004 * 110.43256 * 307.34596 * 20 19 18 22 22 C 1.51101 * 110.38697 * 69.69368 * 20 19 18 23 23 C 1.30532 * 111.10466 * 135.25206 * 22 20 19 24 24 C 1.51212 * 111.11146 * 359.97438 * 23 22 20 25 25 C 1.54637 * 110.38442 * 184.99769 * 20 19 18 26 26 C 1.38300 * 120.13900 * 0.26468 * 13 12 11 27 27 C 1.38103 * 120.06951 * 359.50022 * 26 13 12 28 28 H 0.96998 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.03438 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.96433 * 180.02562 * 12 11 10 31 31 H 1.09006 * 109.47068 * 329.99869 * 14 13 12 32 32 H 1.08993 * 109.47113 * 209.99745 * 14 13 12 33 33 H 0.96998 * 120.00194 * 359.97438 * 15 14 13 34 34 H 0.97001 * 119.99552 * 359.97438 * 18 16 15 35 35 H 1.08991 * 109.47545 * 59.99775 * 19 18 16 36 36 H 1.09002 * 109.46626 * 299.99137 * 19 18 16 37 37 H 1.08004 * 124.44868 * 315.26651 * 22 20 19 38 38 H 1.07997 * 124.44854 * 180.02562 * 23 22 20 39 39 H 1.08995 * 110.42458 * 224.75877 * 24 23 22 40 40 H 1.08997 * 110.39937 * 102.34907 * 24 23 22 41 41 H 1.08993 * 111.03761 * 334.58236 * 25 20 19 42 42 H 1.08997 * 111.03638 * 98.48415 * 25 20 19 43 43 H 1.08000 * 119.96482 * 179.72074 * 26 13 12 44 44 H 1.07994 * 120.03751 * 180.25099 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0922 12 6 4.2026 -4.5970 0.2009 13 6 3.5688 -5.8202 0.3236 14 6 4.3852 -7.0814 0.4414 15 7 4.6579 -7.3564 1.8543 16 6 5.3775 -8.4412 2.2030 17 8 5.8001 -9.1921 1.3449 18 7 5.6281 -8.6946 3.5028 19 6 6.4108 -9.8735 3.8818 20 6 6.5484 -9.9264 5.4047 21 1 6.9334 -8.9802 5.7850 22 6 5.2169 -10.2475 6.0427 23 6 5.3491 -11.1479 6.9785 24 6 6.7917 -11.5782 7.1204 25 6 7.4754 -11.0918 5.8216 26 6 2.1876 -5.8888 0.3323 27 6 1.4367 -4.7344 0.2289 28 1 -0.4850 0.8400 0.0004 29 1 3.9528 -2.4845 -0.0023 30 1 5.2814 -4.5469 0.1909 31 1 5.3271 -6.9558 -0.0926 32 1 3.8309 -7.9146 0.0095 33 1 4.3212 -6.7573 2.5388 34 1 5.2907 -8.0959 4.1874 35 1 7.4007 -9.8131 3.4298 36 1 5.9054 -10.7733 3.5309 37 1 4.2789 -9.7921 5.7612 38 1 4.5348 -11.5353 7.5728 39 1 6.8587 -12.6630 7.2021 40 1 7.2464 -11.1023 7.9892 41 1 7.4813 -11.8767 5.0655 42 1 8.4861 -10.7357 6.0209 43 1 1.6956 -6.8459 0.4237 44 1 0.3582 -4.7882 0.2398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883313200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:25 Heat of formation + Delta-G solvation = -42.591932 kcal Electronic energy + Delta-G solvation = -24454.428252 eV Core-core repulsion = 20757.547174 eV Total energy + Delta-G solvation = -3696.881077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19129 -40.71458 -39.63112 -38.50878 -35.73975 -35.47526 -34.26934 -31.86457 -31.66524 -30.39258 -29.63469 -27.65393 -26.33499 -24.74973 -23.64152 -22.21781 -22.02140 -21.40618 -19.88685 -19.61562 -19.37652 -18.81265 -17.53725 -16.97524 -16.68665 -16.38203 -16.23242 -16.04900 -15.89411 -15.54810 -15.28342 -15.07982 -14.83275 -14.51956 -14.37507 -14.12650 -13.65813 -13.30077 -13.03806 -12.97817 -12.80730 -12.74151 -12.56866 -12.35187 -12.22625 -12.11461 -12.09061 -12.08690 -11.86376 -11.34130 -11.19754 -10.81481 -10.34147 -9.82219 -9.80505 -9.69504 -9.01750 -8.48504 -6.16623 0.53114 0.58072 1.36042 1.37990 1.43022 1.53928 1.86331 2.16952 2.19657 2.80797 3.13372 3.45477 3.48617 3.68753 3.75445 3.89185 3.95315 4.04128 4.17980 4.31961 4.38849 4.47786 4.57381 4.58071 4.62804 4.72784 4.80087 4.81689 4.98631 4.99360 5.04485 5.06513 5.14879 5.22223 5.27092 5.38738 5.48701 5.53281 5.55322 5.66241 5.69281 5.76260 5.98906 6.01616 6.04790 6.16691 6.96466 7.12521 7.61564 7.75864 8.74510 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.001971 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.828042 B =14201.500566 C =14636.473588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.180 4.180 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.639 6.639 18 N -0.734 5.734 19 C 0.152 3.848 20 C -0.072 4.072 21 H 0.097 0.903 22 C -0.176 4.176 23 C -0.169 4.169 24 C -0.102 4.102 25 C -0.118 4.118 26 C -0.043 4.043 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.409 0.591 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.349 -19.177 13.740 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.399 3.601 17 O -0.521 6.521 18 N -0.390 5.390 19 C 0.028 3.972 20 C -0.091 4.091 21 H 0.115 0.885 22 C -0.194 4.194 23 C -0.187 4.187 24 C -0.139 4.139 25 C -0.156 4.156 26 C -0.061 4.061 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.164 0.836 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.342 -19.696 12.929 27.582 hybrid contribution -0.613 1.572 0.335 1.720 sum 13.729 -18.124 13.264 26.323 Atomic orbital electron populations 1.70188 1.08016 1.28785 1.48692 1.26589 0.96840 1.02765 0.95845 0.84528 0.78308 0.74878 0.78508 1.17378 1.19512 1.19363 1.21871 0.92582 0.81318 1.53068 0.87872 1.83948 1.36074 1.12677 1.80855 1.19992 0.91623 0.87946 0.93265 1.21243 0.93002 1.00058 1.11979 1.20941 0.99813 0.90701 0.94867 1.19486 0.93434 0.94098 1.11145 1.19705 0.98026 0.93310 0.80933 1.45235 1.57323 1.26895 1.09196 1.16144 0.79127 0.81510 0.83367 1.90888 1.59275 1.51332 1.50611 1.45029 1.58886 1.29879 1.05213 1.21204 0.94840 0.86651 0.94543 1.21268 0.94501 1.00916 0.92375 0.88541 1.23347 0.98003 0.99667 0.98347 1.23552 0.98313 0.98160 0.98683 1.21433 0.92578 1.01733 0.98190 1.22506 0.98876 0.96846 0.97384 1.20879 0.93071 0.96966 0.95214 1.20450 1.00083 0.90397 1.11448 0.91815 0.86184 0.84332 0.91483 0.91293 0.75705 0.75457 0.92226 0.92951 0.85852 0.85164 0.90398 0.89812 0.90829 0.89366 0.83556 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.67 21.61 0.30 -55.09 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 3 Si 1.02 41.86 29.55 68.60 2.03 43.89 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.41 -23.34 9.49 67.92 0.64 -22.69 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.40 9.76 -22.71 -0.22 -13.62 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 12 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 13 C -0.18 -5.19 5.25 -19.83 -0.10 -5.29 16 14 C 0.20 5.08 5.80 85.63 0.50 5.57 16 15 N -0.73 -16.15 5.55 -482.30 -2.68 -18.83 16 16 C 0.70 17.37 8.57 179.06 1.53 18.91 16 17 O -0.64 -21.45 16.34 -4.01 -0.07 -21.52 16 18 N -0.73 -12.77 5.43 -478.54 -2.60 -15.37 16 19 C 0.15 2.47 4.99 86.38 0.43 2.90 16 20 C -0.07 -0.81 2.94 -10.85 -0.03 -0.84 16 21 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 22 C -0.18 -2.12 9.88 26.26 0.26 -1.86 16 23 C -0.17 -1.87 10.78 26.29 0.28 -1.58 16 24 C -0.10 -0.91 6.82 30.56 0.21 -0.70 16 25 C -0.12 -1.11 6.70 31.70 0.21 -0.89 16 26 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 27 C -0.20 -8.19 9.99 22.39 0.22 -7.96 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 32 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.41 7.53 8.48 -92.71 -0.79 6.74 16 34 H 0.41 4.97 8.42 -92.71 -0.78 4.19 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 37 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.74 7.91 -2.39 -0.02 0.72 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -73.39 372.78 1.63 -71.76 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.54 Total: 30.15 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.41 Total: -21.37 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.98 Total: -89.29 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.29 Total: -35.14 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -73.39 1.63 -71.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.165 kcal (2) G-P(sol) polarization free energy of solvation -73.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds