Wall clock time and date at job start Tue Mar 31 2020 11:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47141 * 269.99778 * 3 2 1 5 5 H 1.48506 * 109.46830 * 29.99582 * 3 2 1 6 6 H 1.48495 * 109.47254 * 149.99513 * 3 2 1 7 7 C 1.37873 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00490 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47231 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47492 * 305.00026 * 10 9 7 12 12 N 1.46503 * 109.47036 * 65.00289 * 10 9 7 13 13 C 1.34768 * 120.00042 * 204.99729 * 12 10 9 14 14 O 1.21591 * 120.00208 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00236 * 180.02562 * 13 12 10 16 16 C 1.46984 * 127.25093 * 0.02562 * 15 13 12 17 17 C 1.50589 * 107.13511 * 179.97438 * 16 15 13 18 18 C 1.30395 * 110.11580 * 0.02562 * 17 16 15 19 19 C 1.46982 * 127.25576 * 179.70616 * 15 13 12 20 20 H 1.09001 * 109.90161 * 60.65992 * 19 15 13 21 21 C 1.53004 * 109.90545 * 299.41437 * 19 15 13 22 22 O 1.42897 * 109.46949 * 294.99851 * 21 19 15 23 23 C 1.50706 * 109.46856 * 185.00344 * 10 9 7 24 24 C 1.38234 * 120.00196 * 100.00429 * 23 10 9 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 10 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00068 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46679 * 60.00094 * 9 7 2 31 31 H 1.09000 * 109.47057 * 300.00605 * 9 7 2 32 32 H 0.96996 * 119.99340 * 24.99962 * 12 10 9 33 33 H 1.08995 * 109.90599 * 299.34368 * 16 15 13 34 34 H 1.09001 * 109.90301 * 60.40970 * 16 15 13 35 35 H 1.07994 * 124.94288 * 180.02562 * 17 16 15 36 36 H 1.08004 * 124.94112 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47037 * 55.00069 * 21 19 15 38 38 H 1.09003 * 109.46846 * 174.99952 * 21 19 15 39 39 H 0.96704 * 114.00289 * 180.02562 * 22 21 19 40 40 H 1.08000 * 119.99516 * 0.24808 * 24 23 10 41 41 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 44 44 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 1 3.5864 -3.1752 0.8443 12 7 3.6343 -3.2924 -1.2493 13 6 3.5075 -4.6333 -1.2963 14 8 3.7148 -5.2989 -0.3001 15 7 3.1519 -5.2367 -2.4478 16 6 2.8666 -4.5933 -3.7382 17 6 2.5165 -5.6875 -4.7118 18 6 2.5727 -6.8485 -4.1208 19 6 2.9740 -6.6772 -2.6795 20 1 2.1886 -7.0633 -2.0297 21 6 4.2874 -7.4143 -2.4097 22 8 5.2695 -7.0016 -3.3622 23 6 5.5233 -2.6384 0.1268 24 6 6.1150 -2.8805 1.3524 25 6 7.4926 -2.8826 1.4664 26 6 8.2786 -2.6431 0.3548 27 6 7.6869 -2.4020 -0.8711 28 6 6.3093 -2.4010 -0.9854 29 1 -0.4850 0.8400 -0.0004 30 1 3.8744 -0.6801 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.4694 -2.7614 -2.0441 33 1 2.0260 -3.9074 -3.6330 34 1 3.7464 -4.0514 -4.0852 35 1 2.2567 -5.5331 -5.7486 36 1 2.3666 -7.7956 -4.5971 37 1 4.6356 -7.1798 -1.4039 38 1 4.1255 -8.4887 -2.4970 39 1 6.1294 -7.4299 -3.2512 40 1 5.5010 -3.0725 2.2199 41 1 7.9548 -3.0714 2.4241 42 1 9.3549 -2.6444 0.4439 43 1 8.3009 -2.2145 -1.7396 44 1 5.8470 -2.2122 -1.9430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883544471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:27 Heat of formation + Delta-G solvation = -16.564485 kcal Electronic energy + Delta-G solvation = -26962.967093 eV Core-core repulsion = 23267.214651 eV Total energy + Delta-G solvation = -3695.752443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38200 -39.12256 -37.76204 -36.15052 -35.17461 -32.70815 -32.03648 -30.76276 -30.49167 -29.81050 -29.15627 -25.45115 -24.90530 -22.86381 -22.24280 -21.73456 -20.24591 -19.45977 -19.32196 -18.01665 -17.23502 -17.02952 -16.33049 -15.68397 -15.48080 -14.96404 -14.80359 -14.63216 -14.30348 -14.03028 -13.68369 -13.42480 -13.22247 -13.05452 -12.84286 -12.68584 -12.50863 -12.37844 -12.34432 -11.98610 -11.82812 -11.25332 -11.05168 -10.91973 -10.72583 -10.48872 -10.21445 -10.09666 -9.85603 -9.58070 -9.52220 -9.31257 -8.61772 -8.57831 -8.50666 -8.27567 -8.05551 -6.09537 -4.09006 1.71884 1.75357 2.13448 2.90863 3.25788 3.34995 3.38445 3.69296 4.13113 4.21402 4.39314 4.46144 4.64522 4.80516 5.20946 5.22472 5.23107 5.24816 5.28921 5.31686 5.47779 5.52132 5.60223 5.68848 5.72055 5.77542 5.86041 5.87849 6.04805 6.22981 6.27531 6.33466 6.41715 6.46346 6.75792 6.78229 6.80048 6.87727 6.96815 7.07624 7.34911 7.37829 7.53011 7.62824 7.66950 8.44171 8.49232 8.96903 9.10303 9.51306 11.03291 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005488 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.240031 B = 5100.556727 C = 7144.193754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.712 5.712 13 C 0.736 3.264 14 O -0.595 6.595 15 N -0.629 5.629 16 C 0.125 3.875 17 C -0.156 4.156 18 C -0.156 4.156 19 C 0.183 3.817 20 H 0.092 0.908 21 C 0.067 3.933 22 O -0.563 6.563 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.106 4.106 29 H 0.263 0.737 30 H 0.035 0.965 31 H 0.018 0.982 32 H 0.397 0.603 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.373 0.627 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -11.336 -7.920 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.108 3.892 11 H 0.110 0.890 12 N -0.364 5.364 13 C 0.439 3.561 14 O -0.473 6.473 15 N -0.369 5.369 16 C 0.002 3.998 17 C -0.174 4.174 18 C -0.175 4.175 19 C 0.078 3.922 20 H 0.109 0.891 21 C -0.012 4.012 22 O -0.368 6.368 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.218 0.782 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.249 -11.237 -7.252 17.476 hybrid contribution 0.685 0.832 -0.327 1.126 sum 11.934 -10.405 -7.579 17.554 Atomic orbital electron populations 1.69908 1.06253 1.26895 1.50627 1.24981 0.94679 0.98939 0.94512 0.86860 0.80496 0.83902 0.78547 1.20300 1.21335 1.18911 1.21018 0.88670 0.94672 1.51268 0.90613 1.19885 0.97845 0.89838 0.97580 1.19843 0.87377 0.95863 0.86146 0.88993 1.45009 1.72856 1.04124 1.14416 1.15169 0.77491 0.82336 0.81132 1.90856 1.58948 1.64184 1.33358 1.47086 1.73960 1.06693 1.09125 1.20732 1.00710 0.95620 0.82772 1.23128 1.00478 0.94525 0.99314 1.23015 1.00802 0.98942 0.94707 1.20199 0.95484 0.81442 0.95097 0.89082 1.22511 0.89121 0.96467 0.93057 1.86510 1.23833 1.70329 1.56094 1.20629 0.97111 0.96618 0.93374 1.21034 0.94620 0.99411 0.97460 1.21045 0.93842 1.00945 0.98307 1.21000 0.99170 1.01839 0.93208 1.21039 0.94823 1.01131 0.97334 1.20905 0.93325 0.99773 0.98406 0.92678 0.94689 0.96363 0.76907 0.90296 0.90963 0.84051 0.84144 0.91655 0.93379 0.78167 0.86035 0.86570 0.86844 0.86766 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.05 9.39 -34.44 -0.32 -14.37 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 10 C 0.21 4.35 2.12 -69.08 -0.15 4.21 16 11 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16 12 N -0.71 -13.62 4.00 -59.81 -0.24 -13.86 16 13 C 0.74 14.39 8.29 -86.92 -0.72 13.67 16 14 O -0.59 -13.27 15.12 5.29 0.08 -13.19 16 15 N -0.63 -10.19 3.06 -173.87 -0.53 -10.73 16 16 C 0.12 1.68 6.33 -4.98 -0.03 1.64 16 17 C -0.16 -1.72 10.87 -35.91 -0.39 -2.11 16 18 C -0.16 -1.72 9.63 -35.91 -0.35 -2.07 16 19 C 0.18 2.51 3.40 -68.87 -0.23 2.28 16 20 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 21 C 0.07 0.86 6.72 37.16 0.25 1.11 16 22 O -0.56 -7.01 13.06 -35.23 -0.46 -7.47 16 23 C -0.08 -1.39 4.91 -104.62 -0.51 -1.91 16 24 C -0.11 -1.82 9.67 -39.58 -0.38 -2.20 16 25 C -0.12 -1.81 10.05 -39.59 -0.40 -2.20 16 26 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 28 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 31 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 32 H 0.40 7.09 7.70 -40.82 -0.31 6.77 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.07 1.01 6.79 -51.93 -0.35 0.65 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.37 3.11 9.12 45.56 0.42 3.52 16 40 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.82 7.72 -52.48 -0.40 1.41 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -33.98 367.98 -9.72 -43.70 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.62 Total: 12.92 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -4.60 Total: -7.09 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.00 Total: -50.74 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.38 Total: -20.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.98 -9.72 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883544471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.139 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds