Wall clock time and date at job start Tue Mar 31 2020 11:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47141 * 269.99778 * 3 2 1 5 5 H 1.48506 * 109.46830 * 29.99582 * 3 2 1 6 6 H 1.48495 * 109.47254 * 149.99513 * 3 2 1 7 7 C 1.37873 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00490 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47231 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47492 * 305.00026 * 10 9 7 12 12 N 1.46503 * 109.47036 * 65.00289 * 10 9 7 13 13 C 1.34768 * 120.00042 * 204.99729 * 12 10 9 14 14 O 1.21591 * 120.00208 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00236 * 180.02562 * 13 12 10 16 16 C 1.46984 * 127.25093 * 0.02562 * 15 13 12 17 17 C 1.50589 * 107.13511 * 179.97438 * 16 15 13 18 18 C 1.30395 * 110.11580 * 0.02562 * 17 16 15 19 19 C 1.46982 * 127.25576 * 179.70616 * 15 13 12 20 20 H 1.09001 * 109.90161 * 60.65992 * 19 15 13 21 21 C 1.53004 * 109.90545 * 299.41437 * 19 15 13 22 22 O 1.42897 * 109.46949 * 294.99851 * 21 19 15 23 23 C 1.50706 * 109.46856 * 185.00344 * 10 9 7 24 24 C 1.38234 * 120.00196 * 100.00429 * 23 10 9 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 10 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00068 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46679 * 60.00094 * 9 7 2 31 31 H 1.09000 * 109.47057 * 300.00605 * 9 7 2 32 32 H 0.96996 * 119.99340 * 24.99962 * 12 10 9 33 33 H 1.08995 * 109.90599 * 299.34368 * 16 15 13 34 34 H 1.09001 * 109.90301 * 60.40970 * 16 15 13 35 35 H 1.07994 * 124.94288 * 180.02562 * 17 16 15 36 36 H 1.08004 * 124.94112 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47037 * 55.00069 * 21 19 15 38 38 H 1.09003 * 109.46846 * 174.99952 * 21 19 15 39 39 H 0.96704 * 114.00289 * 180.02562 * 22 21 19 40 40 H 1.08000 * 119.99516 * 0.24808 * 24 23 10 41 41 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 44 44 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 1 3.5864 -3.1752 0.8443 12 7 3.6343 -3.2924 -1.2493 13 6 3.5075 -4.6333 -1.2963 14 8 3.7148 -5.2989 -0.3001 15 7 3.1519 -5.2367 -2.4478 16 6 2.8666 -4.5933 -3.7382 17 6 2.5165 -5.6875 -4.7118 18 6 2.5727 -6.8485 -4.1208 19 6 2.9740 -6.6772 -2.6795 20 1 2.1886 -7.0633 -2.0297 21 6 4.2874 -7.4143 -2.4097 22 8 5.2695 -7.0016 -3.3622 23 6 5.5233 -2.6384 0.1268 24 6 6.1150 -2.8805 1.3524 25 6 7.4926 -2.8826 1.4664 26 6 8.2786 -2.6431 0.3548 27 6 7.6869 -2.4020 -0.8711 28 6 6.3093 -2.4010 -0.9854 29 1 -0.4850 0.8400 -0.0004 30 1 3.8744 -0.6801 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.4694 -2.7614 -2.0441 33 1 2.0260 -3.9074 -3.6330 34 1 3.7464 -4.0514 -4.0852 35 1 2.2567 -5.5331 -5.7486 36 1 2.3666 -7.7956 -4.5971 37 1 4.6356 -7.1798 -1.4039 38 1 4.1255 -8.4887 -2.4970 39 1 6.1294 -7.4299 -3.2512 40 1 5.5010 -3.0725 2.2199 41 1 7.9548 -3.0714 2.4241 42 1 9.3549 -2.6444 0.4439 43 1 8.3009 -2.2145 -1.7396 44 1 5.8470 -2.2122 -1.9430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883544471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:26 Heat of formation + Delta-G solvation = -40.207079 kcal Electronic energy + Delta-G solvation = -26963.992313 eV Core-core repulsion = 23267.214651 eV Total energy + Delta-G solvation = -3696.777662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69695 -40.36283 -39.06804 -37.14558 -36.79681 -34.71824 -33.45337 -31.97936 -31.67794 -31.02856 -30.80604 -26.88790 -26.25576 -24.09132 -23.59906 -23.24366 -21.62581 -20.87779 -20.42592 -19.26089 -19.05180 -18.27655 -17.69078 -17.10700 -16.77313 -16.44638 -16.08737 -15.96853 -15.64795 -15.27261 -15.03699 -14.78860 -14.57528 -14.39862 -14.22386 -14.11942 -13.98813 -13.72991 -13.58372 -13.34154 -13.03749 -12.88936 -12.48110 -12.36259 -11.97081 -11.89118 -11.80387 -11.73568 -11.46747 -11.41011 -10.84907 -10.77363 -10.59590 -10.03882 -9.76473 -9.55879 -9.28665 -8.28574 -6.33561 0.48744 0.55288 1.27287 1.35560 1.38936 1.50061 1.57970 2.16617 2.35350 2.89070 3.03511 3.13350 3.31763 3.63839 3.84855 3.92668 4.01907 4.19559 4.20544 4.30882 4.31853 4.35707 4.50062 4.55833 4.58136 4.64131 4.65304 4.72417 4.75039 4.89631 5.01443 5.13560 5.16386 5.19288 5.27093 5.40600 5.53918 5.57256 5.63537 5.64923 5.85237 5.90965 6.10909 6.17363 6.25886 6.72683 6.85190 7.00334 7.30319 7.58505 8.87927 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005488 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.240031 B = 5100.556727 C = 7144.193754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.028 0.972 9 C -0.003 4.003 10 C 0.224 3.776 11 H 0.054 0.946 12 N -0.710 5.710 13 C 0.729 3.271 14 O -0.631 6.631 15 N -0.632 5.632 16 C 0.116 3.884 17 C -0.154 4.154 18 C -0.150 4.150 19 C 0.164 3.836 20 H 0.081 0.919 21 C 0.077 3.923 22 O -0.574 6.574 23 C -0.100 4.100 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.118 4.118 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.390 0.610 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.842 -11.127 -9.911 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.046 0.954 9 C -0.041 4.041 10 C 0.118 3.882 11 H 0.072 0.928 12 N -0.362 5.362 13 C 0.431 3.569 14 O -0.513 6.513 15 N -0.370 5.370 16 C -0.007 4.007 17 C -0.172 4.172 18 C -0.167 4.167 19 C 0.060 3.940 20 H 0.099 0.901 21 C -0.002 4.002 22 O -0.381 6.381 23 C -0.101 4.101 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.239 0.761 40 H 0.131 0.869 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.361 -11.054 -9.285 20.363 hybrid contribution -0.279 0.656 0.321 0.782 sum 14.082 -10.397 -8.964 19.666 Atomic orbital electron populations 1.70066 1.08284 1.28092 1.52328 1.25896 0.95471 1.03098 0.94038 0.85721 0.79386 0.78491 0.79443 1.18603 1.21282 1.17324 1.21160 0.90977 0.92905 1.50674 0.95369 1.19725 0.94669 0.91743 0.97917 1.19446 0.89425 0.93840 0.85493 0.92763 1.44894 1.72989 1.04269 1.14085 1.15324 0.77612 0.82217 0.81760 1.90812 1.60610 1.64853 1.35054 1.47142 1.72595 1.08248 1.09027 1.20942 1.00724 0.96719 0.82266 1.23327 1.00457 0.93198 1.00194 1.23199 1.00455 1.00523 0.92567 1.20539 0.96179 0.80031 0.97261 0.90108 1.22332 0.88565 0.98062 0.91261 1.86453 1.24921 1.71086 1.55650 1.20420 0.95376 0.99449 0.94895 1.21172 0.96194 1.00614 0.96888 1.21382 0.92644 0.99810 1.00181 1.21471 1.01044 0.99573 0.92307 1.21416 0.93971 0.99779 0.98927 1.21029 0.94535 1.00292 0.97787 0.92503 0.94812 0.94834 0.76370 0.91306 0.90311 0.80674 0.80676 0.95190 0.90050 0.76116 0.86882 0.83796 0.83067 0.83662 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 2 C 0.01 0.70 5.47 84.65 0.46 1.17 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.52 -29.54 9.39 25.60 0.24 -29.30 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C 0.00 -0.13 3.56 29.85 0.11 -0.02 16 10 C 0.22 9.69 2.12 44.25 0.09 9.79 16 11 H 0.05 2.71 7.44 -2.39 -0.02 2.69 16 12 N -0.71 -28.80 4.00 -461.41 -1.84 -30.65 16 13 C 0.73 30.27 8.29 179.06 1.49 31.76 16 14 O -0.63 -30.29 15.12 -4.00 -0.06 -30.35 16 15 N -0.63 -21.19 3.06 -822.25 -2.52 -23.71 16 16 C 0.12 3.10 6.33 85.51 0.54 3.65 16 17 C -0.15 -3.05 10.87 26.24 0.29 -2.76 16 18 C -0.15 -2.96 9.63 26.23 0.25 -2.70 16 19 C 0.16 4.51 3.40 44.12 0.15 4.66 16 20 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 21 C 0.08 1.91 6.72 71.98 0.48 2.40 16 22 O -0.57 -13.44 13.06 -148.98 -1.95 -15.38 16 23 C -0.10 -3.74 4.91 -19.86 -0.10 -3.84 16 24 C -0.13 -4.49 9.67 22.27 0.22 -4.27 16 25 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 27 C -0.12 -3.20 10.05 22.27 0.22 -2.97 16 28 C -0.12 -3.81 9.32 22.27 0.21 -3.61 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.03 1.59 7.20 -2.39 -0.02 1.57 16 31 H 0.03 1.47 7.57 -2.39 -0.02 1.45 16 32 H 0.40 15.07 7.70 -92.71 -0.71 14.35 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.03 0.96 6.79 -2.39 -0.02 0.94 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.39 5.84 9.12 -74.05 -0.68 5.16 16 40 H 0.11 3.92 8.04 -2.91 -0.02 3.90 16 41 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.12 3.62 7.72 -2.91 -0.02 3.59 16 Total: -1.00 -78.32 367.98 0.48 -77.84 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.43 Total: 37.50 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.10 Total: -1.97 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.06 Total: -112.94 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.01 Total: -45.73 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -78.32 0.48 -77.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883544471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.633 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds