Wall clock time and date at job start Tue Mar 31 2020 11:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99904 * 3 2 1 5 5 H 1.48498 * 109.47097 * 29.99829 * 3 2 1 6 6 H 1.48501 * 109.47248 * 149.99978 * 3 2 1 7 7 C 1.37877 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99762 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99604 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99404 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.54018 * 302.60825 * 14 12 11 16 16 C 1.54637 * 110.48195 * 180.02562 * 14 12 11 17 17 C 1.54480 * 101.79655 * 216.53924 * 16 14 12 18 18 N 1.46765 * 105.47306 * 25.39729 * 17 16 14 19 19 C 1.46505 * 124.34844 * 163.00486 * 18 17 16 20 20 C 1.50700 * 109.47178 * 89.99710 * 19 18 17 21 21 C 1.38233 * 120.00165 * 269.72827 * 20 19 18 22 22 C 1.38236 * 119.99918 * 179.74226 * 21 20 19 23 23 C 1.38235 * 119.99977 * 0.53230 * 22 21 20 24 24 C 1.38235 * 119.99691 * 359.74220 * 23 22 21 25 25 C 1.38228 * 120.00438 * 359.97438 * 24 23 22 26 26 C 1.34412 * 111.30144 * 342.98128 * 18 17 16 27 27 O 1.21281 * 124.94148 * 180.43343 * 26 18 17 28 28 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47229 * 60.00334 * 9 7 2 30 30 H 1.09003 * 109.47379 * 300.00294 * 9 7 2 31 31 H 1.09000 * 109.47091 * 60.00284 * 10 9 7 32 32 H 1.08997 * 109.46863 * 299.99838 * 10 9 7 33 33 H 0.96996 * 119.99980 * 0.02562 * 11 10 9 34 34 H 1.09002 * 110.97169 * 98.40196 * 16 14 12 35 35 H 1.09003 * 110.96908 * 334.67731 * 16 14 12 36 36 H 1.09000 * 110.24248 * 144.39497 * 17 16 14 37 37 H 1.08997 * 110.24755 * 266.39754 * 17 16 14 38 38 H 1.08999 * 109.46787 * 209.99873 * 19 18 17 39 39 H 1.09004 * 109.46951 * 330.00108 * 19 18 17 40 40 H 1.08004 * 119.99940 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99782 * 180.29543 * 22 21 20 42 42 H 1.07995 * 119.99811 * 179.76779 * 23 22 21 43 43 H 1.08004 * 120.00037 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8038 0.0008 13 8 5.5540 -4.8540 0.0018 14 6 7.6674 -3.8037 0.0014 15 1 8.0502 -3.2539 -0.8584 16 6 8.2086 -5.2523 0.0014 17 6 9.4569 -5.1230 0.9023 18 7 9.1935 -3.9716 1.7735 19 6 9.9229 -3.6883 3.0120 20 6 11.1168 -2.8216 2.7049 21 6 12.3332 -3.4033 2.4005 22 6 13.4271 -2.6083 2.1135 23 6 13.3072 -1.2314 2.1417 24 6 12.0921 -0.6497 2.4517 25 6 10.9969 -1.4447 2.7329 26 6 8.1975 -3.2103 1.2887 27 8 7.7836 -2.1952 1.8075 28 1 -0.4850 0.8401 -0.0004 29 1 3.8752 -0.6797 0.8894 30 1 3.8745 -0.6807 -0.8905 31 1 3.6578 -3.1506 -0.8897 32 1 3.6585 -3.1501 0.8903 33 1 5.9715 -1.7965 0.0005 34 1 8.4849 -5.5655 -1.0054 35 1 7.4831 -5.9397 0.4363 36 1 9.5863 -6.0258 1.4991 37 1 10.3433 -4.9413 0.2947 38 1 9.2662 -3.1683 3.7095 39 1 10.2587 -4.6245 3.4582 40 1 12.4281 -4.4791 2.3832 41 1 14.3762 -3.0628 1.8710 42 1 14.1627 -0.6103 1.9212 43 1 11.9983 0.4260 2.4733 44 1 10.0477 -0.9902 2.9755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:00 Heat of formation + Delta-G solvation = -49.607070 kcal Electronic energy + Delta-G solvation = -25670.496342 eV Core-core repulsion = 21973.311066 eV Total energy + Delta-G solvation = -3697.185277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10848 -39.52593 -38.64765 -36.63618 -34.96892 -33.92659 -32.74623 -31.21256 -31.08424 -30.08701 -28.11333 -26.57724 -24.88975 -22.98890 -22.32975 -22.08297 -20.72233 -20.45817 -19.45861 -17.55859 -17.20561 -16.98217 -16.82489 -16.30571 -15.75347 -15.37869 -15.17996 -14.84043 -14.50015 -14.14214 -14.00714 -13.88524 -13.72031 -13.63053 -13.22993 -12.97184 -12.86984 -12.68160 -12.55675 -12.34045 -11.97650 -11.61598 -11.43669 -11.30888 -11.25879 -11.16001 -10.35824 -10.28534 -10.01355 -9.90611 -9.56735 -9.26983 -9.23629 -9.16228 -9.00118 -8.59709 -8.48420 -6.06775 -4.06473 0.92660 1.08935 2.26743 2.61018 2.97441 3.30083 3.37849 3.41831 3.52516 3.58881 4.03616 4.21769 4.41070 4.43125 4.48381 4.67497 4.69934 4.71676 4.80629 4.89206 5.05482 5.12686 5.14732 5.25687 5.26651 5.30953 5.33669 5.59067 5.64631 5.72991 5.88135 6.11634 6.15115 6.17665 6.20612 6.25077 6.27294 6.61376 6.67048 6.78452 6.78675 7.19064 7.30500 7.71511 7.89072 7.94160 8.46093 8.54119 8.97305 9.53879 11.06211 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002932 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.890641 B = 9545.932926 C =10971.520888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.130 3.870 11 N -0.711 5.711 12 C 0.524 3.476 13 O -0.543 6.543 14 C -0.151 4.151 15 H 0.132 0.868 16 C -0.116 4.116 17 C 0.102 3.898 18 N -0.613 5.613 19 C 0.166 3.834 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.095 4.095 26 C 0.530 3.470 27 O -0.510 6.510 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.968 -8.313 3.305 32.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.008 3.992 11 N -0.360 5.360 12 C 0.307 3.693 13 O -0.421 6.421 14 C -0.175 4.175 15 H 0.149 0.851 16 C -0.154 4.154 17 C -0.021 4.021 18 N -0.347 5.347 19 C 0.045 3.955 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.114 4.114 26 C 0.316 3.684 27 O -0.384 6.384 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 30.126 -8.383 3.665 31.485 hybrid contribution 0.744 1.427 -0.120 1.614 sum 30.870 -6.956 3.545 31.842 Atomic orbital electron populations 1.69906 1.06276 1.27007 1.50604 1.24988 0.94762 0.99144 0.94365 0.86770 0.80451 0.83521 0.78520 1.20230 1.21271 1.18894 1.20919 0.88647 0.94869 1.51532 0.90632 1.19796 0.97905 0.91336 0.96999 1.21537 0.75811 1.00281 1.01544 1.46287 1.09231 1.08008 1.72451 1.19633 0.87853 0.84545 0.77222 1.90681 1.69409 1.31269 1.50723 1.22202 0.95708 1.00265 0.99335 0.85069 1.22591 0.96579 0.94709 1.01481 1.22181 0.98395 0.88759 0.92728 1.48202 1.35304 1.26977 1.24229 1.20280 0.90941 0.99035 0.85234 1.20240 0.95106 0.94466 1.01390 1.21031 0.92445 0.99675 0.99245 1.21127 0.98649 0.93903 1.00692 1.21205 0.97660 0.95086 0.99555 1.21217 0.92997 1.00096 0.99688 1.21250 0.99037 0.93176 0.97937 1.20366 0.79305 0.83334 0.85399 1.90775 1.60786 1.23602 1.63262 0.92598 0.95783 0.96443 0.91821 0.91952 0.76384 0.88656 0.87882 0.89927 0.90944 0.88883 0.89250 0.86142 0.86089 0.86140 0.85938 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.80 5.61 -4.04 -0.02 2.78 16 11 N -0.71 -12.83 5.29 -60.29 -0.32 -13.15 16 12 C 0.52 8.75 7.12 -10.98 -0.08 8.68 16 13 O -0.54 -10.65 15.49 5.56 0.09 -10.56 16 14 C -0.15 -1.79 3.33 -91.75 -0.31 -2.09 16 15 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.12 -1.02 6.48 -25.09 -0.16 -1.18 16 17 C 0.10 0.70 7.35 -3.12 -0.02 0.67 16 18 N -0.61 -5.98 2.92 -173.76 -0.51 -6.49 16 19 C 0.17 1.41 6.06 -5.19 -0.03 1.38 16 20 C -0.11 -0.98 5.46 -104.62 -0.57 -1.55 16 21 C -0.11 -0.77 9.70 -39.58 -0.38 -1.15 16 22 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 25 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 26 C 0.53 6.94 7.44 -10.84 -0.08 6.86 16 27 O -0.51 -8.42 16.74 5.56 0.09 -8.32 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 30 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 6.71 8.00 -40.82 -0.33 6.39 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 44 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -35.37 371.46 -9.25 -44.62 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.52 Total: 3.39 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.78 Total: -5.08 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.05 Total: -46.76 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.37 -9.25 -44.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.987 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds