Wall clock time and date at job start Tue Mar 31 2020 11:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99904 * 3 2 1 5 5 H 1.48498 * 109.47097 * 29.99829 * 3 2 1 6 6 H 1.48501 * 109.47248 * 149.99978 * 3 2 1 7 7 C 1.37877 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99762 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99604 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99404 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.54018 * 302.60825 * 14 12 11 16 16 C 1.54637 * 110.48195 * 180.02562 * 14 12 11 17 17 C 1.54480 * 101.79655 * 216.53924 * 16 14 12 18 18 N 1.46765 * 105.47306 * 25.39729 * 17 16 14 19 19 C 1.46505 * 124.34844 * 163.00486 * 18 17 16 20 20 C 1.50700 * 109.47178 * 89.99710 * 19 18 17 21 21 C 1.38233 * 120.00165 * 269.72827 * 20 19 18 22 22 C 1.38236 * 119.99918 * 179.74226 * 21 20 19 23 23 C 1.38235 * 119.99977 * 0.53230 * 22 21 20 24 24 C 1.38235 * 119.99691 * 359.74220 * 23 22 21 25 25 C 1.38228 * 120.00438 * 359.97438 * 24 23 22 26 26 C 1.34412 * 111.30144 * 342.98128 * 18 17 16 27 27 O 1.21281 * 124.94148 * 180.43343 * 26 18 17 28 28 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47229 * 60.00334 * 9 7 2 30 30 H 1.09003 * 109.47379 * 300.00294 * 9 7 2 31 31 H 1.09000 * 109.47091 * 60.00284 * 10 9 7 32 32 H 1.08997 * 109.46863 * 299.99838 * 10 9 7 33 33 H 0.96996 * 119.99980 * 0.02562 * 11 10 9 34 34 H 1.09002 * 110.97169 * 98.40196 * 16 14 12 35 35 H 1.09003 * 110.96908 * 334.67731 * 16 14 12 36 36 H 1.09000 * 110.24248 * 144.39497 * 17 16 14 37 37 H 1.08997 * 110.24755 * 266.39754 * 17 16 14 38 38 H 1.08999 * 109.46787 * 209.99873 * 19 18 17 39 39 H 1.09004 * 109.46951 * 330.00108 * 19 18 17 40 40 H 1.08004 * 119.99940 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99782 * 180.29543 * 22 21 20 42 42 H 1.07995 * 119.99811 * 179.76779 * 23 22 21 43 43 H 1.08004 * 120.00037 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8038 0.0008 13 8 5.5540 -4.8540 0.0018 14 6 7.6674 -3.8037 0.0014 15 1 8.0502 -3.2539 -0.8584 16 6 8.2086 -5.2523 0.0014 17 6 9.4569 -5.1230 0.9023 18 7 9.1935 -3.9716 1.7735 19 6 9.9229 -3.6883 3.0120 20 6 11.1168 -2.8216 2.7049 21 6 12.3332 -3.4033 2.4005 22 6 13.4271 -2.6083 2.1135 23 6 13.3072 -1.2314 2.1417 24 6 12.0921 -0.6497 2.4517 25 6 10.9969 -1.4447 2.7329 26 6 8.1975 -3.2103 1.2887 27 8 7.7836 -2.1952 1.8075 28 1 -0.4850 0.8401 -0.0004 29 1 3.8752 -0.6797 0.8894 30 1 3.8745 -0.6807 -0.8905 31 1 3.6578 -3.1506 -0.8897 32 1 3.6585 -3.1501 0.8903 33 1 5.9715 -1.7965 0.0005 34 1 8.4849 -5.5655 -1.0054 35 1 7.4831 -5.9397 0.4363 36 1 9.5863 -6.0258 1.4991 37 1 10.3433 -4.9413 0.2947 38 1 9.2662 -3.1683 3.7095 39 1 10.2587 -4.6245 3.4582 40 1 12.4281 -4.4791 2.3832 41 1 14.3762 -3.0628 1.8710 42 1 14.1627 -0.6103 1.9212 43 1 11.9983 0.4260 2.4733 44 1 10.0477 -0.9902 2.9755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:59 Heat of formation + Delta-G solvation = -73.267129 kcal Electronic energy + Delta-G solvation = -25671.522320 eV Core-core repulsion = 21973.311066 eV Total energy + Delta-G solvation = -3698.211254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06141 -40.39867 -39.69794 -37.59344 -36.64789 -34.84253 -34.65929 -32.31418 -31.78418 -31.46920 -29.06419 -27.32715 -26.65263 -23.73248 -23.28426 -22.75514 -22.53975 -21.51324 -20.51018 -19.03904 -18.53517 -17.98744 -17.81291 -17.19715 -16.78349 -16.41470 -16.25793 -16.22436 -15.88410 -15.51848 -15.10492 -14.91590 -14.72090 -14.56742 -14.32241 -14.27379 -13.95538 -13.62899 -13.40949 -13.35071 -13.10317 -13.01663 -12.72938 -12.28749 -12.22224 -12.19448 -11.93290 -11.85338 -11.81828 -11.56321 -11.11834 -10.90712 -10.81992 -10.09694 -9.84829 -9.82001 -9.68400 -8.33661 -6.40326 0.32908 0.49945 1.21283 1.34726 1.37707 1.49508 1.55921 2.02633 2.28068 2.33274 2.94590 3.00983 3.20869 3.35744 3.80805 3.81014 3.88186 3.99805 4.14644 4.15768 4.27100 4.30680 4.31506 4.37651 4.48603 4.57465 4.68709 4.70283 4.73161 4.75522 5.00454 5.08176 5.08790 5.15505 5.19871 5.34155 5.37736 5.47819 5.55894 5.60032 5.62422 5.64491 5.99626 6.10770 6.18544 6.49714 6.66633 6.99905 7.14340 7.24228 8.82919 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002932 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.890641 B = 9545.932926 C =10971.520888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.538 4.538 8 H 0.033 0.967 9 C -0.013 4.013 10 C 0.145 3.855 11 N -0.711 5.711 12 C 0.521 3.479 13 O -0.575 6.575 14 C -0.143 4.143 15 H 0.160 0.840 16 C -0.110 4.110 17 C 0.104 3.896 18 N -0.605 5.605 19 C 0.164 3.836 20 C -0.118 4.118 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.121 4.121 26 C 0.518 3.482 27 O -0.557 6.557 28 H 0.269 0.731 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.410 0.590 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.447 -8.826 2.590 36.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.576 4.576 8 H 0.052 0.948 9 C -0.051 4.051 10 C 0.022 3.978 11 N -0.361 5.361 12 C 0.307 3.693 13 O -0.455 6.455 14 C -0.168 4.168 15 H 0.177 0.823 16 C -0.148 4.148 17 C -0.017 4.017 18 N -0.338 5.338 19 C 0.043 3.957 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.155 4.155 25 C -0.140 4.140 26 C 0.304 3.696 27 O -0.435 6.435 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.246 0.754 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 34.666 -8.941 2.947 35.922 hybrid contribution -0.658 1.471 0.131 1.617 sum 34.008 -7.470 3.078 34.955 Atomic orbital electron populations 1.70056 1.08321 1.28432 1.51854 1.25999 0.95685 1.03572 0.93679 0.85601 0.79370 0.77838 0.79500 1.18512 1.20811 1.17193 1.21216 0.91237 0.93555 1.51608 0.94838 1.19636 0.94761 0.93034 0.97633 1.21059 0.78308 0.98380 1.00100 1.46151 1.07595 1.09269 1.73050 1.20459 0.90038 0.83283 0.75542 1.90665 1.70815 1.32241 1.51822 1.22252 0.91466 1.03041 0.99993 0.82308 1.22662 0.96763 0.91808 1.03604 1.22456 0.98131 0.88568 0.92574 1.48333 1.34076 1.26858 1.24485 1.20401 0.90391 1.00424 0.84442 1.20266 0.95934 0.93778 1.01963 1.21334 0.91455 1.01221 0.97954 1.21513 0.99734 0.93636 0.99520 1.21501 0.97571 0.96016 0.98918 1.21365 0.93447 1.00432 1.00289 1.21225 0.98546 0.94370 0.99825 1.20630 0.80064 0.83168 0.85702 1.90748 1.62491 1.25717 1.64543 0.92215 0.95568 0.94682 0.92737 0.94136 0.75398 0.85718 0.90076 0.87219 0.88072 0.91239 0.85852 0.83207 0.83417 0.84228 0.85642 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.54 -32.07 9.66 25.60 0.25 -31.83 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C -0.01 -0.63 4.16 29.85 0.12 -0.50 16 10 C 0.15 6.44 5.61 86.38 0.48 6.92 16 11 N -0.71 -25.80 5.29 -463.05 -2.45 -28.25 16 12 C 0.52 17.31 7.12 87.66 0.62 17.93 16 13 O -0.58 -22.85 15.49 -3.01 -0.05 -22.90 16 14 C -0.14 -3.15 3.33 -11.53 -0.04 -3.19 16 15 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 16 C -0.11 -1.61 6.48 31.65 0.21 -1.40 16 17 C 0.10 0.97 7.35 86.83 0.64 1.61 16 18 N -0.61 -10.45 2.92 -822.24 -2.40 -12.85 16 19 C 0.16 2.51 6.06 85.63 0.52 3.03 16 20 C -0.12 -1.88 5.46 -19.87 -0.11 -1.99 16 21 C -0.10 -1.10 9.70 22.27 0.22 -0.89 16 22 C -0.13 -1.33 10.05 22.27 0.22 -1.11 16 23 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 24 C -0.14 -2.35 10.05 22.27 0.22 -2.13 16 25 C -0.12 -2.44 9.70 22.27 0.22 -2.22 16 26 C 0.52 13.13 7.44 87.92 0.65 13.78 16 27 O -0.56 -18.80 16.74 -3.03 -0.05 -18.85 16 28 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 29 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 30 H 0.03 1.58 7.57 -2.39 -0.02 1.57 16 31 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 13.57 8.00 -92.71 -0.74 12.83 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.60 7.00 -2.39 -0.02 1.58 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 1.39 7.87 -2.39 -0.02 1.38 16 39 H 0.12 1.02 8.08 -2.38 -0.02 1.00 16 40 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.10 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -81.53 371.46 2.36 -79.18 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.20 Total: 19.43 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.92 Total: -2.38 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -4.55 Total: -101.18 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.10 Total: -41.75 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -81.53 2.36 -79.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.908 kcal (2) G-P(sol) polarization free energy of solvation -81.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds