Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46704 * 269.99661 * 3 2 1 5 5 H 1.48493 * 109.47366 * 30.00243 * 3 2 1 6 6 H 1.48501 * 109.46641 * 149.99958 * 3 2 1 7 7 C 1.38808 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99939 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00101 * 180.02562 * 9 7 2 11 11 C 1.53949 * 113.58212 * 205.00227 * 10 9 7 12 12 C 1.52909 * 86.78318 * 220.66164 * 11 10 9 13 13 C 1.52907 * 88.04209 * 24.89812 * 12 11 10 14 14 C 1.52911 * 121.13574 * 150.61469 * 12 11 10 15 15 C 1.53946 * 86.78274 * 100.82043 * 14 12 11 16 16 N 1.46502 * 113.57712 * 139.33155 * 15 14 12 17 17 C 1.34784 * 119.99977 * 155.00361 * 16 15 14 18 18 O 1.21590 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.47537 * 120.00189 * 180.02562 * 17 16 15 20 20 C 1.39705 * 120.18833 * 359.97438 * 19 17 16 21 21 C 1.37786 * 119.90588 * 180.02562 * 20 19 17 22 22 C 1.38545 * 120.30052 * 0.02562 * 21 20 19 23 23 C 1.38056 * 120.39256 * 359.97272 * 22 21 20 24 24 C 1.38714 * 120.08113 * 0.02562 * 23 22 21 25 25 O 1.35656 * 120.14898 * 180.02562 * 24 23 22 26 26 C 1.52905 * 121.14130 * 259.17825 * 12 11 10 27 27 H 0.97006 * 120.00043 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00354 * 0.02562 * 9 7 2 29 29 H 1.09007 * 112.87938 * 336.14157 * 10 9 7 30 30 H 1.09002 * 113.66277 * 106.19156 * 11 10 9 31 31 H 1.08998 * 113.74886 * 335.14876 * 11 10 9 32 32 H 1.08997 * 113.66145 * 89.56867 * 13 12 11 33 33 H 1.09001 * 113.66493 * 220.62745 * 13 12 11 34 34 H 1.09004 * 113.65982 * 346.35451 * 14 12 11 35 35 H 1.09000 * 113.66563 * 215.29894 * 14 12 11 36 36 H 1.08996 * 113.58683 * 270.04798 * 15 14 12 37 37 H 0.96998 * 120.00337 * 335.00477 * 16 15 14 38 38 H 1.07997 * 120.05080 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.85199 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.80964 * 179.70469 * 22 21 20 41 41 H 1.07996 * 119.96048 * 179.97438 * 23 22 21 42 42 H 0.96702 * 113.99463 * 269.99691 * 25 24 23 43 43 H 1.08995 * 113.66653 * 144.70752 * 26 12 11 44 44 H 1.09000 * 113.65990 * 13.64783 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4707 0.0000 11 6 5.5277 -2.3646 0.5958 12 6 5.9795 -3.2896 -0.5348 13 6 4.7825 -2.7948 -1.3474 14 6 7.4002 -3.2171 -1.0957 15 6 7.7109 -4.4539 -0.2332 16 7 8.5534 -5.4433 -0.9095 17 6 9.3116 -6.2904 -0.1855 18 8 9.2959 -6.2337 1.0290 19 6 10.1606 -7.2864 -0.8666 20 6 10.1812 -7.3554 -2.2618 21 6 10.9758 -8.2882 -2.8918 22 6 11.7549 -9.1595 -2.1479 23 6 11.7440 -9.1022 -0.7686 24 6 10.9501 -8.1694 -0.1177 25 8 10.9387 -8.1115 1.2376 26 6 6.2078 -4.7819 -0.2920 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.5287 -3.2969 0.4066 30 1 5.6195 -2.8083 1.5871 31 1 5.9540 -1.3631 0.5385 32 1 4.9982 -1.9138 -1.9518 33 1 4.2790 -3.5822 -1.9084 34 1 7.9455 -2.3236 -0.7915 35 1 7.4575 -3.4056 -2.1677 36 1 8.0663 -4.2094 0.7677 37 1 8.5657 -5.4888 -1.8784 38 1 9.5753 -6.6785 -2.8457 39 1 10.9914 -8.3405 -3.9704 40 1 12.3712 -9.8908 -2.6498 41 1 12.3537 -9.7850 -0.1956 42 1 10.2694 -8.6749 1.6496 43 1 5.9300 -5.4104 -1.1381 44 1 5.8006 -5.1385 0.6541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963575325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = 8.614356 kcal Electronic energy + Delta-G solvation = -25233.350287 eV Core-core repulsion = 21538.689681 eV Total energy + Delta-G solvation = -3694.660606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94274 -40.18163 -38.57192 -37.06782 -35.94523 -33.79471 -32.52837 -31.27993 -30.25676 -30.00659 -25.84399 -25.37899 -24.91072 -23.82214 -23.03735 -22.02523 -20.74743 -20.20593 -18.87438 -18.16225 -17.71840 -17.25342 -16.65092 -16.04829 -15.66091 -15.50280 -15.27195 -14.90722 -14.85010 -14.42050 -14.05689 -13.97415 -13.50690 -12.86353 -12.68702 -12.65799 -12.60317 -12.44020 -12.27928 -12.15715 -11.82537 -11.66518 -11.15847 -11.07824 -11.05726 -10.74991 -10.25941 -10.19510 -9.92664 -9.86325 -9.66961 -9.55857 -9.44370 -9.20347 -9.04437 -8.87718 -7.25069 -5.77303 -3.12448 0.36110 0.75918 2.56310 2.93517 3.32780 3.37488 3.40380 3.45310 3.80968 4.28702 4.30778 4.48550 4.51684 4.58018 4.59020 4.69457 4.82150 4.83037 4.86807 5.22136 5.26187 5.32835 5.39719 5.49582 5.61678 5.66236 5.68996 5.77649 5.80253 5.83202 5.86838 5.89155 6.01433 6.09054 6.12859 6.22128 6.24423 6.31609 6.45556 6.56172 6.80166 7.01075 7.30626 7.34571 7.99874 8.03044 8.42673 9.20775 9.93543 10.13764 11.41016 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.036803 B = 0.002122 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.628112 B =13193.635685 C =13417.235468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.131 4.131 15 C 0.124 3.876 16 N -0.716 5.716 17 C 0.556 3.444 18 O -0.522 6.522 19 C -0.166 4.166 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.079 4.079 23 C -0.158 4.158 24 C 0.168 3.832 25 O -0.478 6.478 26 C -0.124 4.124 27 H 0.259 0.741 28 H 0.362 0.638 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.397 0.603 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.397 0.603 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.487 -19.313 -6.483 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.171 4.171 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.169 4.169 15 C 0.020 3.980 16 N -0.367 5.367 17 C 0.343 3.657 18 O -0.398 6.398 19 C -0.170 4.170 20 C -0.090 4.090 21 C -0.157 4.157 22 C -0.097 4.097 23 C -0.176 4.176 24 C 0.122 3.878 25 O -0.289 6.289 26 C -0.162 4.162 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.233 0.767 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.255 0.745 43 H 0.103 0.897 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 25.631 -18.902 -5.626 32.341 hybrid contribution 0.226 0.895 -0.566 1.083 sum 25.857 -18.007 -6.192 32.112 Atomic orbital electron populations 1.69704 1.05113 1.25820 1.57497 1.24699 0.95268 0.97256 1.02028 0.86544 0.79243 0.84979 0.77752 1.21102 1.21733 1.20295 1.19146 0.80739 0.94745 1.42956 0.89158 1.42771 1.04060 1.02065 1.88862 1.21523 0.89425 0.89813 0.92920 1.23236 0.98772 0.98411 0.96676 1.22064 0.93848 0.95045 0.99371 1.23604 0.95398 1.00339 0.99554 1.23185 0.96906 0.97368 0.99426 1.22648 0.89377 0.87992 0.98003 1.45994 1.45122 1.35663 1.09943 1.18101 0.79466 0.80986 0.87165 1.90816 1.65468 1.70410 1.13129 1.20502 1.01494 1.00808 0.94166 1.21270 0.97481 0.97581 0.92668 1.21128 0.97695 0.96319 1.00537 1.21251 0.97257 0.97848 0.93367 1.21497 1.01555 0.99445 0.95149 1.18531 0.93084 0.92372 0.83839 1.84750 1.59840 1.69970 1.14372 1.23145 0.94957 0.95572 1.02541 0.93070 0.80507 0.89952 0.91685 0.90246 0.90392 0.92248 0.90848 0.89814 0.86718 0.76741 0.85201 0.85051 0.85095 0.84692 0.74516 0.89744 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.74 -17.42 5.20 -52.47 -0.27 -17.69 16 10 C 0.17 3.30 4.48 -66.95 -0.30 3.00 16 11 C -0.13 -2.04 7.59 -26.28 -0.20 -2.24 16 12 C -0.10 -1.34 1.11 -154.71 -0.17 -1.51 16 13 C -0.15 -2.36 7.64 -26.28 -0.20 -2.56 16 14 C -0.13 -1.41 7.59 -26.28 -0.20 -1.61 16 15 C 0.12 1.39 4.24 -66.95 -0.28 1.11 16 16 N -0.72 -6.97 5.30 -53.89 -0.29 -7.25 16 17 C 0.56 6.58 7.76 -12.47 -0.10 6.48 16 18 O -0.52 -8.06 14.76 -16.59 -0.24 -8.31 16 19 C -0.17 -1.59 5.89 -104.85 -0.62 -2.20 16 20 C -0.07 -0.48 9.53 -39.20 -0.37 -0.85 16 21 C -0.14 -0.75 10.02 -39.63 -0.40 -1.15 16 22 C -0.08 -0.43 10.03 -39.54 -0.40 -0.82 16 23 C -0.16 -1.09 9.98 -39.47 -0.39 -1.48 16 24 C 0.17 1.58 6.72 -38.70 -0.26 1.32 16 25 O -0.48 -4.92 11.58 -40.55 -0.47 -5.39 16 26 C -0.12 -1.46 7.64 -26.28 -0.20 -1.66 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.36 8.39 5.79 -40.82 -0.24 8.15 16 29 H 0.08 1.61 8.10 -51.92 -0.42 1.19 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.11 1.51 7.46 -51.93 -0.39 1.12 16 37 H 0.40 2.75 6.76 -40.82 -0.28 2.48 16 38 H 0.13 0.57 6.40 -52.49 -0.34 0.24 16 39 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.40 2.59 9.06 45.56 0.41 3.00 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -35.29 364.66 -9.55 -44.83 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.48 Total: 10.78 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.34 Total: -11.29 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.22 Total: -53.56 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.71 Total: -13.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.29 -9.55 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963575325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.449 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds