Wall clock time and date at job start Tue Mar 31 2020 11:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46704 * 269.99661 * 3 2 1 5 5 H 1.48493 * 109.47366 * 30.00243 * 3 2 1 6 6 H 1.48501 * 109.46641 * 149.99958 * 3 2 1 7 7 C 1.38808 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99939 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99945 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00101 * 180.02562 * 9 7 2 11 11 C 1.53949 * 113.58212 * 205.00227 * 10 9 7 12 12 C 1.52909 * 86.78318 * 220.66164 * 11 10 9 13 13 C 1.52907 * 88.04209 * 24.89812 * 12 11 10 14 14 C 1.52911 * 121.13574 * 150.61469 * 12 11 10 15 15 C 1.53946 * 86.78274 * 100.82043 * 14 12 11 16 16 N 1.46502 * 113.57712 * 139.33155 * 15 14 12 17 17 C 1.34784 * 119.99977 * 155.00361 * 16 15 14 18 18 O 1.21590 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.47537 * 120.00189 * 180.02562 * 17 16 15 20 20 C 1.39705 * 120.18833 * 359.97438 * 19 17 16 21 21 C 1.37786 * 119.90588 * 180.02562 * 20 19 17 22 22 C 1.38545 * 120.30052 * 0.02562 * 21 20 19 23 23 C 1.38056 * 120.39256 * 359.97272 * 22 21 20 24 24 C 1.38714 * 120.08113 * 0.02562 * 23 22 21 25 25 O 1.35656 * 120.14898 * 180.02562 * 24 23 22 26 26 C 1.52905 * 121.14130 * 259.17825 * 12 11 10 27 27 H 0.97006 * 120.00043 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00354 * 0.02562 * 9 7 2 29 29 H 1.09007 * 112.87938 * 336.14157 * 10 9 7 30 30 H 1.09002 * 113.66277 * 106.19156 * 11 10 9 31 31 H 1.08998 * 113.74886 * 335.14876 * 11 10 9 32 32 H 1.08997 * 113.66145 * 89.56867 * 13 12 11 33 33 H 1.09001 * 113.66493 * 220.62745 * 13 12 11 34 34 H 1.09004 * 113.65982 * 346.35451 * 14 12 11 35 35 H 1.09000 * 113.66563 * 215.29894 * 14 12 11 36 36 H 1.08996 * 113.58683 * 270.04798 * 15 14 12 37 37 H 0.96998 * 120.00337 * 335.00477 * 16 15 14 38 38 H 1.07997 * 120.05080 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.85199 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.80964 * 179.70469 * 22 21 20 41 41 H 1.07996 * 119.96048 * 179.97438 * 23 22 21 42 42 H 0.96702 * 113.99463 * 269.99691 * 25 24 23 43 43 H 1.08995 * 113.66653 * 144.70752 * 26 12 11 44 44 H 1.09000 * 113.65990 * 13.64783 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4707 0.0000 11 6 5.5277 -2.3646 0.5958 12 6 5.9795 -3.2896 -0.5348 13 6 4.7825 -2.7948 -1.3474 14 6 7.4002 -3.2171 -1.0957 15 6 7.7109 -4.4539 -0.2332 16 7 8.5534 -5.4433 -0.9095 17 6 9.3116 -6.2904 -0.1855 18 8 9.2959 -6.2337 1.0290 19 6 10.1606 -7.2864 -0.8666 20 6 10.1812 -7.3554 -2.2618 21 6 10.9758 -8.2882 -2.8918 22 6 11.7549 -9.1595 -2.1479 23 6 11.7440 -9.1022 -0.7686 24 6 10.9501 -8.1694 -0.1177 25 8 10.9387 -8.1115 1.2376 26 6 6.2078 -4.7819 -0.2920 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.5287 -3.2969 0.4066 30 1 5.6195 -2.8083 1.5871 31 1 5.9540 -1.3631 0.5385 32 1 4.9982 -1.9138 -1.9518 33 1 4.2790 -3.5822 -1.9084 34 1 7.9455 -2.3236 -0.7915 35 1 7.4575 -3.4056 -2.1677 36 1 8.0663 -4.2094 0.7677 37 1 8.5657 -5.4888 -1.8784 38 1 9.5753 -6.6785 -2.8457 39 1 10.9914 -8.3405 -3.9704 40 1 12.3712 -9.8908 -2.6498 41 1 12.3537 -9.7850 -0.1956 42 1 10.2694 -8.6749 1.6496 43 1 5.9300 -5.4104 -1.1381 44 1 5.8006 -5.1385 0.6541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963575325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:55 Heat of formation + Delta-G solvation = -15.828868 kcal Electronic energy + Delta-G solvation = -25234.410225 eV Core-core repulsion = 21538.689681 eV Total energy + Delta-G solvation = -3695.720544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83417 -41.05975 -39.42671 -37.68519 -37.25766 -35.29011 -33.89224 -32.41526 -31.49707 -30.73189 -26.78443 -26.68580 -26.10169 -25.17018 -23.75841 -23.02847 -21.66015 -21.53874 -19.88425 -19.44961 -18.77472 -18.41332 -17.47611 -16.95627 -16.64626 -16.35942 -16.28281 -15.92734 -15.86514 -15.70721 -15.14061 -15.04747 -14.66144 -14.50546 -13.73652 -13.65924 -13.57585 -13.42224 -13.24018 -13.14163 -12.98923 -12.89334 -12.64150 -12.39745 -12.22062 -12.01895 -11.86455 -11.73872 -11.44349 -11.07275 -10.92150 -10.84739 -10.66894 -10.17208 -9.92115 -9.65021 -9.26255 -8.02401 -5.35086 -0.20917 0.28132 1.37666 1.41291 1.48659 1.85471 2.14713 2.48525 2.74576 3.27216 3.27439 3.44974 3.48512 3.62365 3.70943 3.81248 3.85980 3.88668 4.08224 4.11867 4.29235 4.37079 4.43047 4.47656 4.58388 4.75348 4.78985 4.80695 4.90021 4.93341 4.96886 5.04282 5.07433 5.12059 5.23868 5.26624 5.34374 5.45148 5.47088 5.60573 5.62466 5.78572 5.80742 6.23169 6.55111 6.78498 7.08182 7.22694 7.85921 8.05344 9.19242 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.036803 B = 0.002122 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.628112 B =13193.635685 C =13417.235468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.232 4.232 8 H 0.055 0.945 9 N -0.743 5.743 10 C 0.148 3.852 11 C -0.124 4.124 12 C -0.091 4.091 13 C -0.137 4.137 14 C -0.114 4.114 15 C 0.128 3.872 16 N -0.702 5.702 17 C 0.551 3.449 18 O -0.570 6.570 19 C -0.192 4.192 20 C -0.069 4.069 21 C -0.136 4.136 22 C -0.071 4.071 23 C -0.165 4.165 24 C 0.142 3.858 25 O -0.501 6.501 26 C -0.121 4.121 27 H 0.257 0.743 28 H 0.366 0.634 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.414 0.586 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.147 0.853 42 H 0.405 0.595 43 H 0.100 0.900 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.694 -19.751 -8.986 35.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.384 5.384 10 C 0.040 3.960 11 C -0.163 4.163 12 C -0.092 4.092 13 C -0.177 4.177 14 C -0.152 4.152 15 C 0.023 3.977 16 N -0.354 5.354 17 C 0.340 3.660 18 O -0.450 6.450 19 C -0.196 4.196 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.089 4.089 23 C -0.183 4.183 24 C 0.096 3.904 25 O -0.314 6.314 26 C -0.160 4.160 27 H 0.066 0.934 28 H 0.200 0.800 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.252 0.748 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.165 0.835 42 H 0.264 0.736 43 H 0.118 0.882 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 28.899 -19.385 -8.171 35.745 hybrid contribution -0.771 0.841 0.186 1.156 sum 28.128 -18.544 -7.985 34.624 Atomic orbital electron populations 1.69893 1.07170 1.26645 1.59868 1.25555 0.96184 1.01396 1.02815 0.85368 0.78567 0.79442 0.78155 1.20225 1.22404 1.17681 1.19108 0.82892 0.93379 1.40981 0.92706 1.42759 1.02369 1.03956 1.89341 1.21895 0.90561 0.87621 0.95967 1.23130 0.95957 0.99530 0.97648 1.21884 0.94558 0.95442 0.97327 1.23406 0.96001 1.00511 0.97824 1.23150 0.94252 0.97142 1.00681 1.22394 0.89015 0.88724 0.97519 1.45817 1.44171 1.34716 1.10673 1.18547 0.79407 0.81238 0.86775 1.90786 1.67129 1.71856 1.15203 1.20474 1.02462 1.01135 0.95503 1.21559 0.97659 0.98129 0.91419 1.21543 0.96511 0.95234 1.02119 1.21682 0.96703 0.97858 0.92684 1.21696 1.01275 0.99155 0.96173 1.18895 0.94370 0.93625 0.83493 1.84704 1.60461 1.70693 1.15538 1.23183 0.95409 0.94830 1.02582 0.93398 0.80004 0.91640 0.91493 0.89650 0.90386 0.91989 0.90239 0.87228 0.88837 0.74803 0.82913 0.81970 0.82057 0.83498 0.73562 0.88182 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.93 13.97 21.65 0.30 -63.63 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.96 45.87 27.74 68.60 1.90 47.78 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 7 C -0.23 -13.43 10.45 84.03 0.88 -12.55 16 8 H 0.05 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.74 -34.88 5.20 -319.93 -1.67 -36.54 16 10 C 0.15 5.58 4.48 45.63 0.20 5.79 16 11 C -0.12 -3.68 7.59 30.88 0.23 -3.44 16 12 C -0.09 -2.20 1.11 -52.32 -0.06 -2.26 16 13 C -0.14 -4.14 7.64 30.88 0.24 -3.90 16 14 C -0.11 -2.09 7.59 30.88 0.23 -1.85 16 15 C 0.13 2.66 4.24 45.63 0.19 2.86 16 16 N -0.70 -12.30 5.30 -442.67 -2.35 -14.65 16 17 C 0.55 12.82 7.76 86.69 0.67 13.50 16 18 O -0.57 -18.18 14.76 16.92 0.25 -17.93 16 19 C -0.19 -3.48 5.89 -20.01 -0.12 -3.60 16 20 C -0.07 -0.72 9.53 22.52 0.21 -0.51 16 21 C -0.14 -0.95 10.02 22.24 0.22 -0.72 16 22 C -0.07 -0.53 10.03 22.30 0.22 -0.30 16 23 C -0.16 -2.00 9.98 22.34 0.22 -1.78 16 24 C 0.14 2.64 6.72 22.84 0.15 2.79 16 25 O -0.50 -10.86 11.58 -68.79 -0.80 -11.66 16 26 C -0.12 -2.68 7.64 30.89 0.24 -2.45 16 27 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 28 H 0.37 16.40 5.79 -92.71 -0.54 15.86 16 29 H 0.07 2.65 8.10 -2.38 -0.02 2.63 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.42 16 35 H 0.11 1.51 8.12 -2.39 -0.02 1.49 16 36 H 0.09 2.42 7.46 -2.39 -0.02 2.40 16 37 H 0.41 4.37 6.76 -92.71 -0.63 3.74 16 38 H 0.15 0.74 6.40 -2.91 -0.02 0.72 16 39 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.40 5.98 9.06 -74.06 -0.67 5.31 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -80.14 364.66 1.02 -79.12 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.85 Total: 29.56 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.22 Total: -12.05 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.71 Total: -114.82 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.55 Total: -29.59 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Total: -80.14 1.02 -79.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963575325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.291 kcal (2) G-P(sol) polarization free energy of solvation -80.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds