Wall clock time and date at job start Tue Mar 31 2020 11:12:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99814 * 2 1
4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1
6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1
7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1
9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1
10 10 C 1.47058 * 136.05658 * 359.62946 * 9 7 2
11 11 C 1.53758 * 87.89067 * 152.96230 * 10 9 7
12 12 N 1.46498 * 114.26808 * 139.78834 * 11 10 9
13 13 C 1.34776 * 120.00032 * 111.48122 * 12 11 10
14 14 O 1.21289 * 119.99661 * 359.97438 * 13 12 11
15 15 C 1.50692 * 120.00171 * 180.02562 * 13 12 11
16 16 H 1.09000 * 110.45772 * 302.59732 * 15 13 12
17 17 C 1.54482 * 110.51320 * 65.35563 * 15 13 12
18 18 O 1.44425 * 104.80177 * 94.66473 * 17 15 13
19 19 C 1.44425 * 105.27413 * 40.51526 * 18 17 15
20 20 C 1.54472 * 104.80557 * 319.48548 * 19 18 17
21 21 H 1.09003 * 110.50997 * 265.34006 * 20 19 18
22 22 C 1.50692 * 110.63120 * 142.68550 * 20 19 18
23 23 C 1.38237 * 119.99661 * 305.01629 * 22 20 19
24 24 C 1.38243 * 119.99804 * 179.78878 * 23 22 20
25 25 C 1.38227 * 119.99843 * 0.46535 * 24 23 22
26 26 C 1.38239 * 120.00327 * 359.76480 * 25 24 23
27 27 C 1.38230 * 120.00295 * 125.29223 * 22 20 19
28 28 C 1.47064 * 136.05355 * 179.97438 * 9 7 2
29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3
30 30 H 1.09004 * 113.46989 * 267.69212 * 10 9 7
31 31 H 1.09004 * 113.46924 * 38.13364 * 10 9 7
32 32 H 1.08997 * 114.39597 * 272.67768 * 11 10 9
33 33 H 0.97003 * 119.99918 * 291.47837 * 12 11 10
34 34 H 1.08999 * 110.37154 * 213.49617 * 17 15 13
35 35 H 1.08998 * 110.36680 * 335.83398 * 17 15 13
36 36 H 1.09001 * 110.36900 * 200.64831 * 19 18 17
37 37 H 1.08998 * 110.37333 * 78.32155 * 19 18 17
38 38 H 1.07997 * 120.00289 * 359.97438 * 23 22 20
39 39 H 1.08000 * 119.99956 * 180.24903 * 24 23 22
40 40 H 1.07999 * 120.00182 * 179.79187 * 25 24 23
41 41 H 1.07999 * 119.99779 * 180.02562 * 26 25 24
42 42 H 1.08000 * 119.99971 * 359.97309 * 27 22 20
43 43 H 1.08996 * 113.47041 * 321.85720 * 28 9 7
44 44 H 1.08999 * 113.47129 * 92.30912 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 1.2852 2.7465 -0.0006
5 1 3.1039 1.6965 1.2125
6 1 3.1039 1.6965 -1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0005
10 6 -0.0876 -2.7948 0.0067
11 6 0.3417 -4.0923 -0.6979
12 7 -0.3480 -5.2933 -0.2205
13 6 -1.2189 -5.9348 -1.0246
14 8 -1.4319 -5.5174 -2.1433
15 6 -1.9288 -7.1699 -0.5334
16 1 -1.2075 -7.9287 -0.2300
17 6 -2.8760 -6.8208 0.6360
18 8 -4.1646 -6.6135 0.0178
19 6 -4.2744 -7.6443 -0.9878
20 6 -2.8701 -7.7242 -1.6262
21 1 -2.8219 -7.1047 -2.5218
22 6 -2.5161 -9.1518 -1.9537
23 6 -2.5619 -10.1190 -0.9671
24 6 -2.2414 -11.4295 -1.2684
25 6 -1.8658 -11.7710 -2.5541
26 6 -1.8154 -10.8030 -3.5397
27 6 -2.1401 -9.4933 -3.2393
28 6 1.6801 -3.8153 0.0005
29 1 -0.4850 0.8401 0.0004
30 1 -0.4884 -2.9566 1.0074
31 1 -0.7255 -2.1573 -0.6055
32 1 0.3823 -4.0221 -1.7849
33 1 -0.1779 -5.6269 0.6743
34 1 -2.9238 -7.6472 1.3451
35 1 -2.5434 -5.9105 1.1347
36 1 -5.0164 -7.3665 -1.7364
37 1 -4.5369 -8.5969 -0.5277
38 1 -2.8509 -9.8513 0.0385
39 1 -2.2810 -12.1859 -0.4985
40 1 -1.6122 -12.7942 -2.7889
41 1 -1.5224 -11.0700 -4.5443
42 1 -2.1004 -8.7369 -4.0092
43 1 2.5479 -4.0471 -0.6170
44 1 1.7457 -4.2464 0.9995
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001030557721.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:48
Heat of formation + Delta-G solvation = 5.867588 kcal
Electronic energy + Delta-G solvation = -26010.557502 eV
Core-core repulsion = 22315.777787 eV
Total energy + Delta-G solvation = -3694.779715 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.87242 -39.30968 -38.47644 -37.44351 -33.66403 -33.53774 -31.97789 -31.16339
-30.52857 -28.54638 -27.44095 -24.63245 -24.20703 -23.74557 -22.74624 -22.67641
-20.84058 -19.93277 -19.52910 -17.61813 -17.02509 -16.79304 -16.22983 -16.05709
-15.69846 -15.27798 -15.07837 -14.88063 -14.69164 -14.18626 -13.86048 -13.73215
-13.55769 -13.31442 -13.00038 -12.67084 -12.44404 -12.12655 -11.73747 -11.59282
-11.53500 -11.48861 -11.39601 -11.09983 -11.00209 -10.92980 -10.80057 -10.41963
-10.15546 -10.05178 -9.50445 -9.44401 -9.15832 -8.92852 -8.84148 -8.41693
-6.94912 -5.79202 -3.13975 1.06890 1.15285 2.80426 3.33258 3.39925
3.43631 3.45002 3.50037 3.79370 4.29975 4.40793 4.49254 4.63635
4.70020 4.74576 4.80585 4.86803 4.96744 5.09553 5.20274 5.24459
5.25948 5.37370 5.41856 5.46505 5.53721 5.54936 5.59546 5.73367
5.76379 5.95045 5.99060 6.20135 6.20415 6.26717 6.36401 6.41941
6.51913 6.56819 6.72161 6.75251 7.19181 7.32163 7.53523 7.82193
7.94147 8.48651 8.99790 9.66392 10.57248 11.37674
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.025702 B = 0.002624 C = 0.002515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.150049 B =10668.601978 C =11129.676031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.006 4.006
3 Si 0.916 3.084
4 H -0.289 1.289
5 H -0.284 1.284
6 H -0.283 1.283
7 C -0.223 4.223
8 H 0.083 0.917
9 N -0.604 5.604
10 C 0.146 3.854
11 C 0.087 3.913
12 N -0.711 5.711
13 C 0.523 3.477
14 O -0.535 6.535
15 C -0.139 4.139
16 H 0.111 0.889
17 C 0.055 3.945
18 O -0.364 6.364
19 C 0.054 3.946
20 C -0.076 4.076
21 H 0.118 0.882
22 C -0.071 4.071
23 C -0.118 4.118
24 C -0.119 4.119
25 C -0.124 4.124
26 C -0.118 4.118
27 C -0.108 4.108
28 C 0.111 3.889
29 H 0.256 0.744
30 H 0.026 0.974
31 H 0.075 0.925
32 H 0.116 0.884
33 H 0.396 0.604
34 H 0.070 0.930
35 H 0.100 0.900
36 H 0.096 0.904
37 H 0.064 0.936
38 H 0.121 0.879
39 H 0.121 0.879
40 H 0.120 0.880
41 H 0.122 0.878
42 H 0.125 0.875
43 H 0.045 0.955
44 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.437 -24.932 -0.862 25.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.203 4.203
3 Si 0.746 3.254
4 H -0.215 1.215
5 H -0.211 1.211
6 H -0.209 1.209
7 C -0.350 4.350
8 H 0.101 0.899
9 N -0.330 5.330
10 C 0.019 3.981
11 C -0.018 4.018
12 N -0.361 5.361
13 C 0.308 3.692
14 O -0.412 6.412
15 C -0.161 4.161
16 H 0.129 0.871
17 C -0.022 4.022
18 O -0.282 6.282
19 C -0.023 4.023
20 C -0.095 4.095
21 H 0.136 0.864
22 C -0.072 4.072
23 C -0.136 4.136
24 C -0.137 4.137
25 C -0.143 4.143
26 C -0.136 4.136
27 C -0.126 4.126
28 C -0.016 4.016
29 H 0.066 0.934
30 H 0.044 0.956
31 H 0.094 0.906
32 H 0.134 0.866
33 H 0.230 0.770
34 H 0.088 0.912
35 H 0.118 0.882
36 H 0.114 0.886
37 H 0.082 0.918
38 H 0.139 0.861
39 H 0.139 0.861
40 H 0.138 0.862
41 H 0.140 0.860
42 H 0.143 0.857
43 H 0.063 0.937
44 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -6.697 -24.041 -1.629 25.009
hybrid contribution 0.806 0.495 0.610 1.125
sum -5.892 -23.546 -1.019 24.293
Atomic orbital electron populations
1.69831 1.05060 1.25705 1.55669 1.24847 0.95728 0.97691 1.02024
0.86143 0.78440 0.82843 0.77971 1.21463 1.21089 1.20929 1.18846
0.90082 0.81047 1.45001 0.89937 1.45261 1.02756 0.99115 1.85825
1.22561 0.88999 0.89882 0.96688 1.23711 0.93910 0.83848 1.00376
1.45976 1.43631 1.29083 1.17404 1.20099 0.79313 0.84300 0.85536
1.90671 1.63551 1.66941 1.20048 1.22816 0.98900 0.97225 0.97151
0.87075 1.23439 0.82599 1.02489 0.93698 1.89206 1.35171 1.52190
1.51667 1.23570 0.96243 0.91719 0.90771 1.21589 0.94019 0.93190
1.00698 0.86417 1.19704 0.99356 0.94263 0.93835 1.21025 1.00594
0.92935 0.99048 1.21120 0.99671 0.96201 0.96746 1.21162 1.00261
0.99397 0.93432 1.21179 0.99868 0.93130 0.99442 1.21177 0.98598
0.96536 0.96277 1.22708 0.94925 0.87179 0.96824 0.93410 0.95589
0.90623 0.86638 0.77041 0.91191 0.88160 0.88583 0.91837 0.86101
0.86094 0.86220 0.86013 0.85664 0.93679 0.94891
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.68 11.50 55.49 0.64 -27.04 16
2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16
3 Si 0.92 22.25 29.55 -169.99 -5.02 17.22 16
4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
7 C -0.22 -6.29 10.75 -15.06 -0.16 -6.46 16
8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16
9 N -0.60 -15.63 3.78 -184.63 -0.70 -16.33 16
10 C 0.15 3.50 7.23 -8.37 -0.06 3.44 16
11 C 0.09 1.69 4.62 -67.68 -0.31 1.38 16
12 N -0.71 -10.69 5.21 -53.49 -0.28 -10.97 16
13 C 0.52 8.04 7.07 -10.99 -0.08 7.97 16
14 O -0.54 -10.45 14.87 5.55 0.08 -10.37 16
15 C -0.14 -1.54 2.95 -90.20 -0.27 -1.81 16
16 H 0.11 1.01 7.40 -51.93 -0.38 0.62 16
17 C 0.06 0.57 7.17 37.94 0.27 0.84 16
18 O -0.36 -4.73 11.65 -35.23 -0.41 -5.14 16
19 C 0.05 0.56 7.08 37.93 0.27 0.83 16
20 C -0.08 -0.84 2.92 -90.21 -0.26 -1.11 16
21 H 0.12 1.59 6.30 -51.93 -0.33 1.26 16
22 C -0.07 -0.70 4.78 -104.63 -0.50 -1.20 16
23 C -0.12 -0.99 8.19 -39.58 -0.32 -1.31 16
24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16
25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16
26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16
27 C -0.11 -1.06 9.68 -39.58 -0.38 -1.44 16
28 C 0.11 2.23 8.44 -8.51 -0.07 2.16 16
29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.08 2.09 7.11 -51.93 -0.37 1.72 16
32 H 0.12 2.49 7.45 -51.93 -0.39 2.10 16
33 H 0.40 4.67 8.76 -40.82 -0.36 4.32 16
34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.10 1.08 7.72 -51.93 -0.40 0.68 16
36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.06 0.54 6.78 -51.93 -0.35 0.19 16
38 H 0.12 0.83 7.62 -52.49 -0.40 0.43 16
39 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16
40 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16
41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16
42 H 0.13 1.21 7.97 -52.49 -0.42 0.79 16
43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16
44 H 0.03 0.61 8.13 -51.93 -0.42 0.18 16
LS Contribution 362.51 15.07 5.46 5.46
Total: -1.00 -34.44 362.51 -9.72 -44.16
By element:
Atomic # 1 Polarization: 10.39 SS G_CDS: -6.32 Total: 4.06 kcal
Atomic # 6 Polarization: 2.11 SS G_CDS: -3.17 Total: -1.06 kcal
Atomic # 7 Polarization: -54.00 SS G_CDS: -0.34 Total: -54.34 kcal
Atomic # 8 Polarization: -15.17 SS G_CDS: -0.33 Total: -15.50 kcal
Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -34.44 -9.72 -44.16 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001030557721.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.025 kcal
(2) G-P(sol) polarization free energy of solvation -34.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.587 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds