Wall clock time and date at job start Tue Mar 31 2020 11:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47058 * 136.05658 * 359.62946 * 9 7 2 11 11 C 1.53758 * 87.89067 * 152.96230 * 10 9 7 12 12 N 1.46498 * 114.26808 * 139.78834 * 11 10 9 13 13 C 1.34776 * 120.00032 * 111.48122 * 12 11 10 14 14 O 1.21289 * 119.99661 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00171 * 180.02562 * 13 12 11 16 16 H 1.09000 * 110.45772 * 302.59732 * 15 13 12 17 17 C 1.54482 * 110.51320 * 65.35563 * 15 13 12 18 18 O 1.44425 * 104.80177 * 94.66473 * 17 15 13 19 19 C 1.44425 * 105.27413 * 40.51526 * 18 17 15 20 20 C 1.54472 * 104.80557 * 319.48548 * 19 18 17 21 21 H 1.09003 * 110.50997 * 265.34006 * 20 19 18 22 22 C 1.50692 * 110.63120 * 142.68550 * 20 19 18 23 23 C 1.38237 * 119.99661 * 305.01629 * 22 20 19 24 24 C 1.38243 * 119.99804 * 179.78878 * 23 22 20 25 25 C 1.38227 * 119.99843 * 0.46535 * 24 23 22 26 26 C 1.38239 * 120.00327 * 359.76480 * 25 24 23 27 27 C 1.38230 * 120.00295 * 125.29223 * 22 20 19 28 28 C 1.47064 * 136.05355 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 1.09004 * 113.46989 * 267.69212 * 10 9 7 31 31 H 1.09004 * 113.46924 * 38.13364 * 10 9 7 32 32 H 1.08997 * 114.39597 * 272.67768 * 11 10 9 33 33 H 0.97003 * 119.99918 * 291.47837 * 12 11 10 34 34 H 1.08999 * 110.37154 * 213.49617 * 17 15 13 35 35 H 1.08998 * 110.36680 * 335.83398 * 17 15 13 36 36 H 1.09001 * 110.36900 * 200.64831 * 19 18 17 37 37 H 1.08998 * 110.37333 * 78.32155 * 19 18 17 38 38 H 1.07997 * 120.00289 * 359.97438 * 23 22 20 39 39 H 1.08000 * 119.99956 * 180.24903 * 24 23 22 40 40 H 1.07999 * 120.00182 * 179.79187 * 25 24 23 41 41 H 1.07999 * 119.99779 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.99971 * 359.97309 * 27 22 20 43 43 H 1.08996 * 113.47041 * 321.85720 * 28 9 7 44 44 H 1.08999 * 113.47129 * 92.30912 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.0876 -2.7948 0.0067 11 6 0.3417 -4.0923 -0.6979 12 7 -0.3480 -5.2933 -0.2205 13 6 -1.2189 -5.9348 -1.0246 14 8 -1.4319 -5.5174 -2.1433 15 6 -1.9288 -7.1699 -0.5334 16 1 -1.2075 -7.9287 -0.2300 17 6 -2.8760 -6.8208 0.6360 18 8 -4.1646 -6.6135 0.0178 19 6 -4.2744 -7.6443 -0.9878 20 6 -2.8701 -7.7242 -1.6262 21 1 -2.8219 -7.1047 -2.5218 22 6 -2.5161 -9.1518 -1.9537 23 6 -2.5619 -10.1190 -0.9671 24 6 -2.2414 -11.4295 -1.2684 25 6 -1.8658 -11.7710 -2.5541 26 6 -1.8154 -10.8030 -3.5397 27 6 -2.1401 -9.4933 -3.2393 28 6 1.6801 -3.8153 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.4884 -2.9566 1.0074 31 1 -0.7255 -2.1573 -0.6055 32 1 0.3823 -4.0221 -1.7849 33 1 -0.1779 -5.6269 0.6743 34 1 -2.9238 -7.6472 1.3451 35 1 -2.5434 -5.9105 1.1347 36 1 -5.0164 -7.3665 -1.7364 37 1 -4.5369 -8.5969 -0.5277 38 1 -2.8509 -9.8513 0.0385 39 1 -2.2810 -12.1859 -0.4985 40 1 -1.6122 -12.7942 -2.7889 41 1 -1.5224 -11.0700 -4.5443 42 1 -2.1004 -8.7369 -4.0092 43 1 2.5479 -4.0471 -0.6170 44 1 1.7457 -4.2464 0.9995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030557721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:48 Heat of formation + Delta-G solvation = 5.867588 kcal Electronic energy + Delta-G solvation = -26010.557502 eV Core-core repulsion = 22315.777787 eV Total energy + Delta-G solvation = -3694.779715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87242 -39.30968 -38.47644 -37.44351 -33.66403 -33.53774 -31.97789 -31.16339 -30.52857 -28.54638 -27.44095 -24.63245 -24.20703 -23.74557 -22.74624 -22.67641 -20.84058 -19.93277 -19.52910 -17.61813 -17.02509 -16.79304 -16.22983 -16.05709 -15.69846 -15.27798 -15.07837 -14.88063 -14.69164 -14.18626 -13.86048 -13.73215 -13.55769 -13.31442 -13.00038 -12.67084 -12.44404 -12.12655 -11.73747 -11.59282 -11.53500 -11.48861 -11.39601 -11.09983 -11.00209 -10.92980 -10.80057 -10.41963 -10.15546 -10.05178 -9.50445 -9.44401 -9.15832 -8.92852 -8.84148 -8.41693 -6.94912 -5.79202 -3.13975 1.06890 1.15285 2.80426 3.33258 3.39925 3.43631 3.45002 3.50037 3.79370 4.29975 4.40793 4.49254 4.63635 4.70020 4.74576 4.80585 4.86803 4.96744 5.09553 5.20274 5.24459 5.25948 5.37370 5.41856 5.46505 5.53721 5.54936 5.59546 5.73367 5.76379 5.95045 5.99060 6.20135 6.20415 6.26717 6.36401 6.41941 6.51913 6.56819 6.72161 6.75251 7.19181 7.32163 7.53523 7.82193 7.94147 8.48651 8.99790 9.66392 10.57248 11.37674 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025702 B = 0.002624 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.150049 B =10668.601978 C =11129.676031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.223 4.223 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.146 3.854 11 C 0.087 3.913 12 N -0.711 5.711 13 C 0.523 3.477 14 O -0.535 6.535 15 C -0.139 4.139 16 H 0.111 0.889 17 C 0.055 3.945 18 O -0.364 6.364 19 C 0.054 3.946 20 C -0.076 4.076 21 H 0.118 0.882 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.108 4.108 28 C 0.111 3.889 29 H 0.256 0.744 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.045 0.955 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -24.932 -0.862 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.350 4.350 8 H 0.101 0.899 9 N -0.330 5.330 10 C 0.019 3.981 11 C -0.018 4.018 12 N -0.361 5.361 13 C 0.308 3.692 14 O -0.412 6.412 15 C -0.161 4.161 16 H 0.129 0.871 17 C -0.022 4.022 18 O -0.282 6.282 19 C -0.023 4.023 20 C -0.095 4.095 21 H 0.136 0.864 22 C -0.072 4.072 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.016 4.016 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.063 0.937 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.697 -24.041 -1.629 25.009 hybrid contribution 0.806 0.495 0.610 1.125 sum -5.892 -23.546 -1.019 24.293 Atomic orbital electron populations 1.69831 1.05060 1.25705 1.55669 1.24847 0.95728 0.97691 1.02024 0.86143 0.78440 0.82843 0.77971 1.21463 1.21089 1.20929 1.18846 0.90082 0.81047 1.45001 0.89937 1.45261 1.02756 0.99115 1.85825 1.22561 0.88999 0.89882 0.96688 1.23711 0.93910 0.83848 1.00376 1.45976 1.43631 1.29083 1.17404 1.20099 0.79313 0.84300 0.85536 1.90671 1.63551 1.66941 1.20048 1.22816 0.98900 0.97225 0.97151 0.87075 1.23439 0.82599 1.02489 0.93698 1.89206 1.35171 1.52190 1.51667 1.23570 0.96243 0.91719 0.90771 1.21589 0.94019 0.93190 1.00698 0.86417 1.19704 0.99356 0.94263 0.93835 1.21025 1.00594 0.92935 0.99048 1.21120 0.99671 0.96201 0.96746 1.21162 1.00261 0.99397 0.93432 1.21179 0.99868 0.93130 0.99442 1.21177 0.98598 0.96536 0.96277 1.22708 0.94925 0.87179 0.96824 0.93410 0.95589 0.90623 0.86638 0.77041 0.91191 0.88160 0.88583 0.91837 0.86101 0.86094 0.86220 0.86013 0.85664 0.93679 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 11.50 55.49 0.64 -27.04 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.29 10.75 -15.06 -0.16 -6.46 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.63 3.78 -184.63 -0.70 -16.33 16 10 C 0.15 3.50 7.23 -8.37 -0.06 3.44 16 11 C 0.09 1.69 4.62 -67.68 -0.31 1.38 16 12 N -0.71 -10.69 5.21 -53.49 -0.28 -10.97 16 13 C 0.52 8.04 7.07 -10.99 -0.08 7.97 16 14 O -0.54 -10.45 14.87 5.55 0.08 -10.37 16 15 C -0.14 -1.54 2.95 -90.20 -0.27 -1.81 16 16 H 0.11 1.01 7.40 -51.93 -0.38 0.62 16 17 C 0.06 0.57 7.17 37.94 0.27 0.84 16 18 O -0.36 -4.73 11.65 -35.23 -0.41 -5.14 16 19 C 0.05 0.56 7.08 37.93 0.27 0.83 16 20 C -0.08 -0.84 2.92 -90.21 -0.26 -1.11 16 21 H 0.12 1.59 6.30 -51.93 -0.33 1.26 16 22 C -0.07 -0.70 4.78 -104.63 -0.50 -1.20 16 23 C -0.12 -0.99 8.19 -39.58 -0.32 -1.31 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.11 -1.06 9.68 -39.58 -0.38 -1.44 16 28 C 0.11 2.23 8.44 -8.51 -0.07 2.16 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 2.09 7.11 -51.93 -0.37 1.72 16 32 H 0.12 2.49 7.45 -51.93 -0.39 2.10 16 33 H 0.40 4.67 8.76 -40.82 -0.36 4.32 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.08 7.72 -51.93 -0.40 0.68 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.54 6.78 -51.93 -0.35 0.19 16 38 H 0.12 0.83 7.62 -52.49 -0.40 0.43 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.21 7.97 -52.49 -0.42 0.79 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.61 8.13 -51.93 -0.42 0.18 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -34.44 362.51 -9.72 -44.16 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.32 Total: 4.06 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.17 Total: -1.06 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.34 Total: -54.34 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.33 Total: -15.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.44 -9.72 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030557721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.025 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds