Wall clock time and date at job start Tue Mar 31 2020 11:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47058 * 136.05658 * 359.62946 * 9 7 2 11 11 C 1.53758 * 87.89067 * 152.96230 * 10 9 7 12 12 N 1.46498 * 114.26808 * 139.78834 * 11 10 9 13 13 C 1.34776 * 120.00032 * 111.48122 * 12 11 10 14 14 O 1.21289 * 119.99661 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00171 * 180.02562 * 13 12 11 16 16 H 1.09000 * 110.45772 * 302.59732 * 15 13 12 17 17 C 1.54482 * 110.51320 * 65.35563 * 15 13 12 18 18 O 1.44425 * 104.80177 * 94.66473 * 17 15 13 19 19 C 1.44425 * 105.27413 * 40.51526 * 18 17 15 20 20 C 1.54472 * 104.80557 * 319.48548 * 19 18 17 21 21 H 1.09003 * 110.50997 * 265.34006 * 20 19 18 22 22 C 1.50692 * 110.63120 * 142.68550 * 20 19 18 23 23 C 1.38237 * 119.99661 * 305.01629 * 22 20 19 24 24 C 1.38243 * 119.99804 * 179.78878 * 23 22 20 25 25 C 1.38227 * 119.99843 * 0.46535 * 24 23 22 26 26 C 1.38239 * 120.00327 * 359.76480 * 25 24 23 27 27 C 1.38230 * 120.00295 * 125.29223 * 22 20 19 28 28 C 1.47064 * 136.05355 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 1.09004 * 113.46989 * 267.69212 * 10 9 7 31 31 H 1.09004 * 113.46924 * 38.13364 * 10 9 7 32 32 H 1.08997 * 114.39597 * 272.67768 * 11 10 9 33 33 H 0.97003 * 119.99918 * 291.47837 * 12 11 10 34 34 H 1.08999 * 110.37154 * 213.49617 * 17 15 13 35 35 H 1.08998 * 110.36680 * 335.83398 * 17 15 13 36 36 H 1.09001 * 110.36900 * 200.64831 * 19 18 17 37 37 H 1.08998 * 110.37333 * 78.32155 * 19 18 17 38 38 H 1.07997 * 120.00289 * 359.97438 * 23 22 20 39 39 H 1.08000 * 119.99956 * 180.24903 * 24 23 22 40 40 H 1.07999 * 120.00182 * 179.79187 * 25 24 23 41 41 H 1.07999 * 119.99779 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.99971 * 359.97309 * 27 22 20 43 43 H 1.08996 * 113.47041 * 321.85720 * 28 9 7 44 44 H 1.08999 * 113.47129 * 92.30912 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.0876 -2.7948 0.0067 11 6 0.3417 -4.0923 -0.6979 12 7 -0.3480 -5.2933 -0.2205 13 6 -1.2189 -5.9348 -1.0246 14 8 -1.4319 -5.5174 -2.1433 15 6 -1.9288 -7.1699 -0.5334 16 1 -1.2075 -7.9287 -0.2300 17 6 -2.8760 -6.8208 0.6360 18 8 -4.1646 -6.6135 0.0178 19 6 -4.2744 -7.6443 -0.9878 20 6 -2.8701 -7.7242 -1.6262 21 1 -2.8219 -7.1047 -2.5218 22 6 -2.5161 -9.1518 -1.9537 23 6 -2.5619 -10.1190 -0.9671 24 6 -2.2414 -11.4295 -1.2684 25 6 -1.8658 -11.7710 -2.5541 26 6 -1.8154 -10.8030 -3.5397 27 6 -2.1401 -9.4933 -3.2393 28 6 1.6801 -3.8153 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.4884 -2.9566 1.0074 31 1 -0.7255 -2.1573 -0.6055 32 1 0.3823 -4.0221 -1.7849 33 1 -0.1779 -5.6269 0.6743 34 1 -2.9238 -7.6472 1.3451 35 1 -2.5434 -5.9105 1.1347 36 1 -5.0164 -7.3665 -1.7364 37 1 -4.5369 -8.5969 -0.5277 38 1 -2.8509 -9.8513 0.0385 39 1 -2.2810 -12.1859 -0.4985 40 1 -1.6122 -12.7942 -2.7889 41 1 -1.5224 -11.0700 -4.5443 42 1 -2.1004 -8.7369 -4.0092 43 1 2.5479 -4.0471 -0.6170 44 1 1.7457 -4.2464 0.9995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030557721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:47 Heat of formation + Delta-G solvation = -17.624745 kcal Electronic energy + Delta-G solvation = -26011.576206 eV Core-core repulsion = 22315.777787 eV Total energy + Delta-G solvation = -3695.798419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86806 -40.51675 -39.51634 -38.83397 -35.23517 -34.38774 -33.88647 -31.78518 -31.50446 -29.48758 -29.17147 -26.43685 -25.65244 -24.58860 -24.02155 -23.34698 -21.84987 -21.49879 -20.72968 -18.81668 -18.50131 -17.95455 -17.49874 -16.99606 -16.82509 -16.76804 -16.15683 -15.91997 -15.73154 -15.50763 -15.37408 -14.83798 -14.59977 -14.20179 -14.09226 -13.78719 -13.71267 -13.35347 -13.19154 -13.18300 -12.90001 -12.69420 -12.57841 -12.43527 -12.28967 -12.25015 -12.01903 -11.77672 -11.74922 -11.43280 -11.13530 -10.92027 -10.59149 -9.95362 -9.78113 -9.59091 -9.01214 -7.94688 -5.30954 0.43294 0.53151 1.44168 1.48847 1.55023 1.56432 2.07437 2.47925 2.83527 2.96911 3.26022 3.37464 3.45017 3.62457 3.76411 3.83686 3.95961 4.02366 4.11669 4.20249 4.28469 4.31751 4.35462 4.43299 4.50173 4.64092 4.65082 4.71315 4.74080 4.76368 4.80170 4.86213 5.02560 5.12052 5.15369 5.19347 5.23092 5.43748 5.59577 5.66541 5.66741 5.74452 5.76986 5.86176 6.14681 6.57166 6.83956 7.25741 7.54473 8.52165 9.22420 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025702 B = 0.002624 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.150049 B =10668.601978 C =11129.676031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.986 3.014 4 H -0.296 1.296 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.232 4.232 8 H 0.093 0.907 9 N -0.638 5.638 10 C 0.144 3.856 11 C 0.115 3.885 12 N -0.697 5.697 13 C 0.518 3.482 14 O -0.583 6.583 15 C -0.127 4.127 16 H 0.143 0.857 17 C 0.054 3.946 18 O -0.396 6.396 19 C 0.055 3.945 20 C -0.072 4.072 21 H 0.083 0.917 22 C -0.081 4.081 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.131 4.131 28 C 0.122 3.878 29 H 0.249 0.751 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -27.952 0.940 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.222 1.222 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.360 4.360 8 H 0.111 0.889 9 N -0.364 5.364 10 C 0.017 3.983 11 C 0.009 3.991 12 N -0.349 5.349 13 C 0.305 3.695 14 O -0.463 6.463 15 C -0.148 4.148 16 H 0.160 0.840 17 C -0.023 4.023 18 O -0.315 6.315 19 C -0.021 4.021 20 C -0.092 4.092 21 H 0.101 0.899 22 C -0.082 4.082 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.004 4.004 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.254 0.746 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.665 -27.127 0.206 27.713 hybrid contribution 0.472 1.328 -0.001 1.409 sum -5.193 -25.799 0.205 26.317 Atomic orbital electron populations 1.70053 1.06753 1.25892 1.57641 1.25782 0.96599 1.01376 1.02578 0.85041 0.77037 0.78071 0.78513 1.22205 1.19701 1.20040 1.19321 0.90883 0.82306 1.43486 0.88935 1.45579 1.03748 1.00904 1.86209 1.22500 0.87987 0.91421 0.96396 1.22936 0.93772 0.83793 0.98643 1.45707 1.43207 1.27487 1.18453 1.20958 0.78592 0.85180 0.84751 1.90666 1.64817 1.68466 1.22303 1.22827 0.99234 0.95243 0.97490 0.83953 1.23652 0.81211 1.03848 0.93573 1.89175 1.36363 1.53517 1.52430 1.23675 0.95689 0.92285 0.90493 1.21440 0.94657 0.93745 0.99316 0.89869 1.19609 1.00526 0.93714 0.94307 1.21236 1.00095 0.92807 0.99454 1.21478 0.98471 0.96492 0.97278 1.21499 0.99415 1.00221 0.93369 1.21382 0.99812 0.92746 1.00550 1.21243 1.00051 0.97151 0.96481 1.22817 0.95205 0.83888 0.98521 0.94229 0.95324 0.95434 0.89037 0.74578 0.86900 0.88914 0.88999 0.89127 0.84005 0.83484 0.84024 0.84873 0.87071 0.92323 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.87 11.50 21.65 0.25 -59.62 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.99 46.38 29.55 68.60 2.03 48.41 16 4 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.23 -13.20 10.75 84.03 0.90 -12.30 16 8 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 9 N -0.64 -33.29 3.78 -738.04 -2.79 -36.08 16 10 C 0.14 7.14 7.23 83.27 0.60 7.74 16 11 C 0.12 4.53 4.62 45.55 0.21 4.74 16 12 N -0.70 -20.26 5.21 -441.54 -2.30 -22.56 16 13 C 0.52 15.87 7.07 87.65 0.62 16.49 16 14 O -0.58 -23.81 14.87 -3.06 -0.05 -23.86 16 15 C -0.13 -2.59 2.95 -10.52 -0.03 -2.62 16 16 H 0.14 2.05 7.40 -2.39 -0.02 2.03 16 17 C 0.05 0.98 7.17 72.49 0.52 1.50 16 18 O -0.40 -9.84 11.65 -148.98 -1.74 -11.58 16 19 C 0.05 1.08 7.08 72.48 0.51 1.59 16 20 C -0.07 -1.57 2.92 -10.53 -0.03 -1.60 16 21 H 0.08 2.41 6.30 -2.39 -0.02 2.39 16 22 C -0.08 -1.49 4.78 -19.87 -0.09 -1.58 16 23 C -0.12 -1.57 8.19 22.27 0.18 -1.39 16 24 C -0.12 -1.38 10.05 22.27 0.22 -1.16 16 25 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 27 C -0.13 -2.58 9.68 22.27 0.22 -2.36 16 28 C 0.12 4.69 8.44 83.18 0.70 5.40 16 29 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.03 1.61 7.11 -2.39 -0.02 1.59 16 32 H 0.09 4.09 7.45 -2.39 -0.02 4.08 16 33 H 0.42 8.74 8.76 -92.71 -0.81 7.92 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.83 7.72 -2.39 -0.02 1.81 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.28 6.78 -2.39 -0.02 1.27 16 38 H 0.14 1.25 7.62 -2.91 -0.02 1.22 16 39 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.11 2.36 7.97 -2.91 -0.02 2.34 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 Total: -1.00 -78.92 362.51 1.06 -77.87 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.20 Total: 19.77 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.45 Total: 7.65 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.84 Total: -118.26 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.78 Total: -35.43 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.92 1.06 -77.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030557721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.243 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds