Wall clock time and date at job start Tue Mar 31 2020 11:12:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99814 * 2 1
4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1
6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1
7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1
9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1
10 10 C 1.47058 * 136.05658 * 359.62946 * 9 7 2
11 11 C 1.53758 * 87.89067 * 152.96230 * 10 9 7
12 12 N 1.46498 * 114.26808 * 139.78834 * 11 10 9
13 13 C 1.34776 * 120.00032 * 111.48122 * 12 11 10
14 14 O 1.21289 * 119.99661 * 359.97438 * 13 12 11
15 15 C 1.50692 * 120.00171 * 180.02562 * 13 12 11
16 16 H 1.09000 * 110.45772 * 302.59732 * 15 13 12
17 17 C 1.54482 * 110.51320 * 65.35563 * 15 13 12
18 18 O 1.44425 * 104.80177 * 94.66473 * 17 15 13
19 19 C 1.44425 * 105.27413 * 40.51526 * 18 17 15
20 20 C 1.54472 * 104.80557 * 319.48548 * 19 18 17
21 21 H 1.09003 * 110.50997 * 265.34006 * 20 19 18
22 22 C 1.50692 * 110.63120 * 142.68550 * 20 19 18
23 23 C 1.38237 * 119.99661 * 305.01629 * 22 20 19
24 24 C 1.38243 * 119.99804 * 179.78878 * 23 22 20
25 25 C 1.38227 * 119.99843 * 0.46535 * 24 23 22
26 26 C 1.38239 * 120.00327 * 359.76480 * 25 24 23
27 27 C 1.38230 * 120.00295 * 125.29223 * 22 20 19
28 28 C 1.47064 * 136.05355 * 179.97438 * 9 7 2
29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3
30 30 H 1.09004 * 113.46989 * 267.69212 * 10 9 7
31 31 H 1.09004 * 113.46924 * 38.13364 * 10 9 7
32 32 H 1.08997 * 114.39597 * 272.67768 * 11 10 9
33 33 H 0.97003 * 119.99918 * 291.47837 * 12 11 10
34 34 H 1.08999 * 110.37154 * 213.49617 * 17 15 13
35 35 H 1.08998 * 110.36680 * 335.83398 * 17 15 13
36 36 H 1.09001 * 110.36900 * 200.64831 * 19 18 17
37 37 H 1.08998 * 110.37333 * 78.32155 * 19 18 17
38 38 H 1.07997 * 120.00289 * 359.97438 * 23 22 20
39 39 H 1.08000 * 119.99956 * 180.24903 * 24 23 22
40 40 H 1.07999 * 120.00182 * 179.79187 * 25 24 23
41 41 H 1.07999 * 119.99779 * 180.02562 * 26 25 24
42 42 H 1.08000 * 119.99971 * 359.97309 * 27 22 20
43 43 H 1.08996 * 113.47041 * 321.85720 * 28 9 7
44 44 H 1.08999 * 113.47129 * 92.30912 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 1.2852 2.7465 -0.0006
5 1 3.1039 1.6965 1.2125
6 1 3.1039 1.6965 -1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0005
10 6 -0.0876 -2.7948 0.0067
11 6 0.3417 -4.0923 -0.6979
12 7 -0.3480 -5.2933 -0.2205
13 6 -1.2189 -5.9348 -1.0246
14 8 -1.4319 -5.5174 -2.1433
15 6 -1.9288 -7.1699 -0.5334
16 1 -1.2075 -7.9287 -0.2300
17 6 -2.8760 -6.8208 0.6360
18 8 -4.1646 -6.6135 0.0178
19 6 -4.2744 -7.6443 -0.9878
20 6 -2.8701 -7.7242 -1.6262
21 1 -2.8219 -7.1047 -2.5218
22 6 -2.5161 -9.1518 -1.9537
23 6 -2.5619 -10.1190 -0.9671
24 6 -2.2414 -11.4295 -1.2684
25 6 -1.8658 -11.7710 -2.5541
26 6 -1.8154 -10.8030 -3.5397
27 6 -2.1401 -9.4933 -3.2393
28 6 1.6801 -3.8153 0.0005
29 1 -0.4850 0.8401 0.0004
30 1 -0.4884 -2.9566 1.0074
31 1 -0.7255 -2.1573 -0.6055
32 1 0.3823 -4.0221 -1.7849
33 1 -0.1779 -5.6269 0.6743
34 1 -2.9238 -7.6472 1.3451
35 1 -2.5434 -5.9105 1.1347
36 1 -5.0164 -7.3665 -1.7364
37 1 -4.5369 -8.5969 -0.5277
38 1 -2.8509 -9.8513 0.0385
39 1 -2.2810 -12.1859 -0.4985
40 1 -1.6122 -12.7942 -2.7889
41 1 -1.5224 -11.0700 -4.5443
42 1 -2.1004 -8.7369 -4.0092
43 1 2.5479 -4.0471 -0.6170
44 1 1.7457 -4.2464 0.9995
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001030557721.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:47
Heat of formation + Delta-G solvation = -17.624745 kcal
Electronic energy + Delta-G solvation = -26011.576206 eV
Core-core repulsion = 22315.777787 eV
Total energy + Delta-G solvation = -3695.798419 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.86806 -40.51675 -39.51634 -38.83397 -35.23517 -34.38774 -33.88647 -31.78518
-31.50446 -29.48758 -29.17147 -26.43685 -25.65244 -24.58860 -24.02155 -23.34698
-21.84987 -21.49879 -20.72968 -18.81668 -18.50131 -17.95455 -17.49874 -16.99606
-16.82509 -16.76804 -16.15683 -15.91997 -15.73154 -15.50763 -15.37408 -14.83798
-14.59977 -14.20179 -14.09226 -13.78719 -13.71267 -13.35347 -13.19154 -13.18300
-12.90001 -12.69420 -12.57841 -12.43527 -12.28967 -12.25015 -12.01903 -11.77672
-11.74922 -11.43280 -11.13530 -10.92027 -10.59149 -9.95362 -9.78113 -9.59091
-9.01214 -7.94688 -5.30954 0.43294 0.53151 1.44168 1.48847 1.55023
1.56432 2.07437 2.47925 2.83527 2.96911 3.26022 3.37464 3.45017
3.62457 3.76411 3.83686 3.95961 4.02366 4.11669 4.20249 4.28469
4.31751 4.35462 4.43299 4.50173 4.64092 4.65082 4.71315 4.74080
4.76368 4.80170 4.86213 5.02560 5.12052 5.15369 5.19347 5.23092
5.43748 5.59577 5.66541 5.66741 5.74452 5.76986 5.86176 6.14681
6.57166 6.83956 7.25741 7.54473 8.52165 9.22420
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.025702 B = 0.002624 C = 0.002515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.150049 B =10668.601978 C =11129.676031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.070 4.070
3 Si 0.986 3.014
4 H -0.296 1.296
5 H -0.271 1.271
6 H -0.275 1.275
7 C -0.232 4.232
8 H 0.093 0.907
9 N -0.638 5.638
10 C 0.144 3.856
11 C 0.115 3.885
12 N -0.697 5.697
13 C 0.518 3.482
14 O -0.583 6.583
15 C -0.127 4.127
16 H 0.143 0.857
17 C 0.054 3.946
18 O -0.396 6.396
19 C 0.055 3.945
20 C -0.072 4.072
21 H 0.083 0.917
22 C -0.081 4.081
23 C -0.118 4.118
24 C -0.119 4.119
25 C -0.127 4.127
26 C -0.127 4.127
27 C -0.131 4.131
28 C 0.122 3.878
29 H 0.249 0.751
30 H 0.029 0.971
31 H 0.027 0.973
32 H 0.092 0.908
33 H 0.417 0.583
34 H 0.113 0.887
35 H 0.093 0.907
36 H 0.092 0.908
37 H 0.091 0.909
38 H 0.142 0.858
39 H 0.147 0.853
40 H 0.142 0.858
41 H 0.133 0.867
42 H 0.111 0.889
43 H 0.059 0.941
44 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.430 -27.952 0.940 28.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.603 5.603
2 C -0.263 4.263
3 Si 0.813 3.187
4 H -0.222 1.222
5 H -0.197 1.197
6 H -0.200 1.200
7 C -0.360 4.360
8 H 0.111 0.889
9 N -0.364 5.364
10 C 0.017 3.983
11 C 0.009 3.991
12 N -0.349 5.349
13 C 0.305 3.695
14 O -0.463 6.463
15 C -0.148 4.148
16 H 0.160 0.840
17 C -0.023 4.023
18 O -0.315 6.315
19 C -0.021 4.021
20 C -0.092 4.092
21 H 0.101 0.899
22 C -0.082 4.082
23 C -0.136 4.136
24 C -0.137 4.137
25 C -0.145 4.145
26 C -0.145 4.145
27 C -0.149 4.149
28 C -0.004 4.004
29 H 0.058 0.942
30 H 0.047 0.953
31 H 0.046 0.954
32 H 0.110 0.890
33 H 0.254 0.746
34 H 0.131 0.869
35 H 0.111 0.889
36 H 0.110 0.890
37 H 0.109 0.891
38 H 0.160 0.840
39 H 0.165 0.835
40 H 0.160 0.840
41 H 0.151 0.849
42 H 0.129 0.871
43 H 0.077 0.923
44 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -5.665 -27.127 0.206 27.713
hybrid contribution 0.472 1.328 -0.001 1.409
sum -5.193 -25.799 0.205 26.317
Atomic orbital electron populations
1.70053 1.06753 1.25892 1.57641 1.25782 0.96599 1.01376 1.02578
0.85041 0.77037 0.78071 0.78513 1.22205 1.19701 1.20040 1.19321
0.90883 0.82306 1.43486 0.88935 1.45579 1.03748 1.00904 1.86209
1.22500 0.87987 0.91421 0.96396 1.22936 0.93772 0.83793 0.98643
1.45707 1.43207 1.27487 1.18453 1.20958 0.78592 0.85180 0.84751
1.90666 1.64817 1.68466 1.22303 1.22827 0.99234 0.95243 0.97490
0.83953 1.23652 0.81211 1.03848 0.93573 1.89175 1.36363 1.53517
1.52430 1.23675 0.95689 0.92285 0.90493 1.21440 0.94657 0.93745
0.99316 0.89869 1.19609 1.00526 0.93714 0.94307 1.21236 1.00095
0.92807 0.99454 1.21478 0.98471 0.96492 0.97278 1.21499 0.99415
1.00221 0.93369 1.21382 0.99812 0.92746 1.00550 1.21243 1.00051
0.97151 0.96481 1.22817 0.95205 0.83888 0.98521 0.94229 0.95324
0.95434 0.89037 0.74578 0.86900 0.88914 0.88999 0.89127 0.84005
0.83484 0.84024 0.84873 0.87071 0.92323 0.91491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -59.87 11.50 21.65 0.25 -59.62 16
2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16
3 Si 0.99 46.38 29.55 68.60 2.03 48.41 16
4 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16
7 C -0.23 -13.20 10.75 84.03 0.90 -12.30 16
8 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16
9 N -0.64 -33.29 3.78 -738.04 -2.79 -36.08 16
10 C 0.14 7.14 7.23 83.27 0.60 7.74 16
11 C 0.12 4.53 4.62 45.55 0.21 4.74 16
12 N -0.70 -20.26 5.21 -441.54 -2.30 -22.56 16
13 C 0.52 15.87 7.07 87.65 0.62 16.49 16
14 O -0.58 -23.81 14.87 -3.06 -0.05 -23.86 16
15 C -0.13 -2.59 2.95 -10.52 -0.03 -2.62 16
16 H 0.14 2.05 7.40 -2.39 -0.02 2.03 16
17 C 0.05 0.98 7.17 72.49 0.52 1.50 16
18 O -0.40 -9.84 11.65 -148.98 -1.74 -11.58 16
19 C 0.05 1.08 7.08 72.48 0.51 1.59 16
20 C -0.07 -1.57 2.92 -10.53 -0.03 -1.60 16
21 H 0.08 2.41 6.30 -2.39 -0.02 2.39 16
22 C -0.08 -1.49 4.78 -19.87 -0.09 -1.58 16
23 C -0.12 -1.57 8.19 22.27 0.18 -1.39 16
24 C -0.12 -1.38 10.05 22.27 0.22 -1.16 16
25 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16
26 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16
27 C -0.13 -2.58 9.68 22.27 0.22 -2.36 16
28 C 0.12 4.69 8.44 83.18 0.70 5.40 16
29 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16
30 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16
31 H 0.03 1.61 7.11 -2.39 -0.02 1.59 16
32 H 0.09 4.09 7.45 -2.39 -0.02 4.08 16
33 H 0.42 8.74 8.76 -92.71 -0.81 7.92 16
34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.09 1.83 7.72 -2.39 -0.02 1.81 16
36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
37 H 0.09 1.28 6.78 -2.39 -0.02 1.27 16
38 H 0.14 1.25 7.62 -2.91 -0.02 1.22 16
39 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16
40 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16
41 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16
42 H 0.11 2.36 7.97 -2.91 -0.02 2.34 16
43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
44 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16
Total: -1.00 -78.92 362.51 1.06 -77.87
By element:
Atomic # 1 Polarization: 19.57 SS G_CDS: 0.20 Total: 19.77 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: 5.45 Total: 7.65 kcal
Atomic # 7 Polarization: -113.42 SS G_CDS: -4.84 Total: -118.26 kcal
Atomic # 8 Polarization: -33.65 SS G_CDS: -1.78 Total: -35.43 kcal
Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal
Total: -78.92 1.06 -77.87 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001030557721.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.243 kcal
(2) G-P(sol) polarization free energy of solvation -78.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds