Wall clock time and date at job start Tue Mar 31 2020 11:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47021 * 265.06832 * 3 2 1 5 5 H 1.48493 * 109.47263 * 25.07368 * 3 2 1 6 6 H 1.48504 * 109.46743 * 145.07389 * 3 2 1 7 7 C 1.38814 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99963 * 173.29739 * 7 2 1 9 9 N 1.36937 * 119.99886 * 353.30493 * 7 2 1 10 10 C 1.47576 * 134.49241 * 174.24298 * 9 7 2 11 11 C 1.53953 * 86.11823 * 155.35993 * 10 9 7 12 12 N 1.46503 * 113.74190 * 137.95465 * 11 10 9 13 13 C 1.34776 * 119.99956 * 156.93039 * 12 11 10 14 14 O 1.21279 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 H 1.08998 * 110.75290 * 352.70082 * 15 13 12 17 17 C 1.54385 * 110.84696 * 229.22570 * 15 13 12 18 18 O 1.43237 * 107.58745 * 262.96282 * 17 15 13 19 19 C 1.43649 * 109.97252 * 1.71320 * 18 17 15 20 20 C 1.54944 * 105.22184 * 335.52400 * 19 18 17 21 21 H 1.08998 * 111.12109 * 278.57239 * 20 19 18 22 22 C 1.50702 * 111.12637 * 154.41781 * 20 19 18 23 23 C 1.38228 * 119.99844 * 198.22341 * 22 20 19 24 24 C 1.38240 * 120.00055 * 179.78195 * 23 22 20 25 25 C 1.38232 * 119.99633 * 0.44262 * 24 23 22 26 26 C 1.38233 * 120.00158 * 359.81041 * 25 24 23 27 27 C 1.38230 * 119.99845 * 18.48565 * 22 20 19 28 28 C 1.47814 * 134.45633 * 354.11586 * 9 7 2 29 29 H 0.97005 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.76955 * 41.06531 * 10 9 7 31 31 H 1.09003 * 113.77447 * 269.66003 * 10 9 7 32 32 H 1.09001 * 113.74030 * 269.16146 * 11 10 9 33 33 H 0.97001 * 119.99681 * 336.92392 * 12 11 10 34 34 H 1.08997 * 109.82909 * 143.45054 * 17 15 13 35 35 H 1.08995 * 109.90356 * 22.51943 * 17 15 13 36 36 H 1.09003 * 110.31154 * 94.48488 * 19 18 17 37 37 H 1.08999 * 110.30809 * 216.55563 * 19 18 17 38 38 H 1.08001 * 120.00133 * 359.97438 * 23 22 20 39 39 H 1.07996 * 120.00206 * 180.26759 * 24 23 22 40 40 H 1.07995 * 119.99918 * 179.83271 * 25 24 23 41 41 H 1.08006 * 120.00065 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.00595 * 359.97438 * 27 22 20 43 43 H 1.09001 * 113.76899 * 90.38110 * 28 9 7 44 44 H 1.08996 * 113.83798 * 318.91532 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6019 1.9862 -1.3949 5 1 1.3996 2.6805 0.5933 6 1 3.4918 1.4723 0.8016 7 6 2.0102 -1.2022 0.0005 8 1 3.0847 -1.2054 -0.1086 9 7 1.3325 -2.3840 0.1393 10 6 1.7140 -3.8083 0.0785 11 6 0.4836 -4.0677 0.9668 12 7 -0.2913 -5.2465 0.5714 13 6 -1.0807 -5.8667 1.4706 14 8 -1.1492 -5.4491 2.6072 15 6 -1.8783 -7.0788 1.0638 16 1 -1.8066 -7.2454 -0.0110 17 6 -3.3523 -6.9388 1.5010 18 8 -3.5046 -7.6405 2.7405 19 6 -2.2414 -8.1850 3.1544 20 6 -1.4181 -8.3392 1.8509 21 1 -1.6877 -9.2532 1.3218 22 6 0.0614 -8.2954 2.1345 23 6 0.9540 -8.0378 1.1110 24 6 2.3108 -7.9931 1.3720 25 6 2.7754 -8.2151 2.6548 26 6 1.8832 -8.4779 3.6773 27 6 0.5261 -8.5182 3.4172 28 6 -0.0747 -2.7444 0.4126 29 1 -0.4850 0.8401 -0.0004 30 1 2.6629 -4.0302 0.5667 31 1 1.6354 -4.2420 -0.9185 32 1 0.6998 -4.0398 2.0348 33 1 -0.2362 -5.5805 -0.3376 34 1 -4.0052 -7.3763 0.7458 35 1 -3.6000 -5.8864 1.6390 36 1 -1.7406 -7.5009 3.8394 37 1 -2.3851 -9.1561 3.6283 38 1 0.5912 -7.8683 0.1080 39 1 3.0079 -7.7875 0.5732 40 1 3.8356 -8.1829 2.8582 41 1 2.2462 -8.6510 4.6797 42 1 -0.1710 -8.7233 4.2161 43 1 -0.6798 -2.8650 -0.4860 44 1 -0.5512 -2.1185 1.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030557823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:54 Heat of formation + Delta-G solvation = 6.442518 kcal Electronic energy + Delta-G solvation = -27031.006359 eV Core-core repulsion = 23336.251575 eV Total energy + Delta-G solvation = -3694.754784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94647 -38.96389 -38.44240 -37.19777 -33.70790 -33.38769 -31.88822 -31.12150 -30.50297 -28.40450 -27.45868 -24.85823 -24.22224 -23.78947 -22.69208 -21.98626 -20.92296 -19.89439 -19.38688 -17.69536 -17.20757 -16.77903 -16.01095 -15.88057 -15.41687 -15.17159 -14.95510 -14.89752 -14.76511 -14.20729 -13.85286 -13.51362 -13.38692 -13.31100 -12.84316 -12.66768 -12.28693 -12.19480 -11.87254 -11.70673 -11.48937 -11.46373 -11.33017 -11.05321 -10.92667 -10.86418 -10.74764 -10.48579 -10.09121 -9.58461 -9.55455 -9.40833 -8.96137 -8.78985 -8.78127 -8.42942 -6.94373 -5.81081 -3.13276 1.26861 1.35757 2.80252 3.35748 3.40969 3.44653 3.46010 3.65960 3.72168 4.20127 4.42954 4.54119 4.65868 4.83048 4.89345 4.89403 4.99336 5.06546 5.09340 5.10215 5.18332 5.43012 5.45029 5.52620 5.53965 5.56607 5.63827 5.70936 5.88867 5.90578 5.95393 6.00589 6.19099 6.39218 6.39879 6.44946 6.47642 6.54746 6.76091 6.86324 6.92929 7.18423 7.34668 7.49925 7.85914 7.93352 8.54040 9.00217 9.66920 10.54182 11.36900 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003731 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.881829 B = 7502.246847 C = 8631.100023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.096 3.904 12 N -0.710 5.710 13 C 0.524 3.476 14 O -0.531 6.531 15 C -0.143 4.143 16 H 0.105 0.895 17 C 0.073 3.927 18 O -0.377 6.377 19 C 0.058 3.942 20 C -0.065 4.065 21 H 0.106 0.894 22 C -0.077 4.077 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.110 4.110 28 C 0.160 3.840 29 H 0.255 0.745 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.108 0.892 33 H 0.394 0.606 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.032 0.968 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -21.982 1.847 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.009 4.009 12 N -0.360 5.360 13 C 0.308 3.692 14 O -0.407 6.407 15 C -0.164 4.164 16 H 0.123 0.877 17 C -0.004 4.004 18 O -0.296 6.296 19 C -0.018 4.018 20 C -0.084 4.084 21 H 0.124 0.876 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.128 4.128 28 C 0.034 3.966 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.126 0.874 33 H 0.227 0.773 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.050 0.950 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.456 -21.303 2.774 21.532 hybrid contribution 0.733 0.921 -0.922 1.495 sum -0.723 -20.382 1.852 20.479 Atomic orbital electron populations 1.69843 1.05099 1.25612 1.55845 1.24829 0.95644 0.97713 1.01971 0.86140 0.78696 0.83237 0.77668 1.21471 1.21493 1.20561 1.18957 0.90549 0.81805 1.44205 0.90119 1.45781 1.05279 0.99133 1.83044 1.22831 0.95597 0.87008 0.95850 1.23812 0.92601 0.84155 1.00364 1.46139 1.45642 1.30894 1.13360 1.19964 0.79803 0.83666 0.85739 1.90705 1.64613 1.65858 1.19552 1.23028 0.96709 0.94482 1.02229 0.87716 1.22964 0.92825 0.98243 0.86399 1.88372 1.30283 1.71974 1.39009 1.23571 0.83678 0.98891 0.95651 1.21727 0.92431 0.97093 0.97155 0.87619 1.19448 0.93536 1.00631 0.94081 1.20895 0.93227 0.99943 0.98515 1.21099 0.95439 0.99394 0.97021 1.21154 0.99670 0.99785 0.93210 1.21114 0.93268 1.00046 0.99116 1.21006 0.95723 1.00105 0.95945 1.22587 0.87924 0.89161 0.96943 0.93497 0.93404 0.94952 0.87432 0.77268 0.90411 0.90565 0.90303 0.89771 0.86401 0.85978 0.86217 0.86155 0.86032 0.95011 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 11.69 55.49 0.65 -26.94 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.41 10.69 -15.06 -0.16 -6.57 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.61 -15.52 3.69 -177.86 -0.66 -16.18 16 10 C 0.11 2.25 8.69 -2.97 -0.03 2.23 16 11 C 0.10 1.83 4.40 -70.13 -0.31 1.52 16 12 N -0.71 -10.48 4.95 -55.33 -0.27 -10.75 16 13 C 0.52 7.87 4.67 -10.99 -0.05 7.82 16 14 O -0.53 -10.26 15.13 5.56 0.08 -10.18 16 15 C -0.14 -1.55 2.89 -89.68 -0.26 -1.81 16 16 H 0.10 0.82 8.00 -51.93 -0.42 0.40 16 17 C 0.07 0.84 7.17 37.88 0.27 1.12 16 18 O -0.38 -5.04 11.36 -35.23 -0.40 -5.44 16 19 C 0.06 0.67 5.53 38.18 0.21 0.88 16 20 C -0.07 -0.65 3.33 -89.38 -0.30 -0.95 16 21 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.08 -0.85 4.43 -104.63 -0.46 -1.32 16 23 C -0.11 -1.15 8.07 -39.58 -0.32 -1.47 16 24 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 27 C -0.11 -1.23 8.92 -39.58 -0.35 -1.58 16 28 C 0.16 3.83 7.14 -2.84 -0.02 3.81 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.11 2.30 7.51 -51.93 -0.39 1.91 16 33 H 0.39 4.65 8.61 -40.82 -0.35 4.30 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.02 7.83 -51.93 -0.41 0.61 16 36 H 0.08 1.08 6.24 -51.93 -0.32 0.75 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 1.05 7.84 -52.49 -0.41 0.64 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.12 1.20 6.49 -52.49 -0.34 0.86 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.76 7.61 -51.93 -0.40 1.36 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -34.50 358.54 -9.67 -44.17 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.38 Total: 4.22 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.07 Total: -1.50 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.28 Total: -53.87 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.32 Total: -15.61 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.50 -9.67 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030557823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.612 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds