Wall clock time and date at job start Tue Mar 31 2020 11:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47021 * 265.06832 * 3 2 1 5 5 H 1.48493 * 109.47263 * 25.07368 * 3 2 1 6 6 H 1.48504 * 109.46743 * 145.07389 * 3 2 1 7 7 C 1.38814 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99963 * 173.29739 * 7 2 1 9 9 N 1.36937 * 119.99886 * 353.30493 * 7 2 1 10 10 C 1.47576 * 134.49241 * 174.24298 * 9 7 2 11 11 C 1.53953 * 86.11823 * 155.35993 * 10 9 7 12 12 N 1.46503 * 113.74190 * 137.95465 * 11 10 9 13 13 C 1.34776 * 119.99956 * 156.93039 * 12 11 10 14 14 O 1.21279 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 H 1.08998 * 110.75290 * 352.70082 * 15 13 12 17 17 C 1.54385 * 110.84696 * 229.22570 * 15 13 12 18 18 O 1.43237 * 107.58745 * 262.96282 * 17 15 13 19 19 C 1.43649 * 109.97252 * 1.71320 * 18 17 15 20 20 C 1.54944 * 105.22184 * 335.52400 * 19 18 17 21 21 H 1.08998 * 111.12109 * 278.57239 * 20 19 18 22 22 C 1.50702 * 111.12637 * 154.41781 * 20 19 18 23 23 C 1.38228 * 119.99844 * 198.22341 * 22 20 19 24 24 C 1.38240 * 120.00055 * 179.78195 * 23 22 20 25 25 C 1.38232 * 119.99633 * 0.44262 * 24 23 22 26 26 C 1.38233 * 120.00158 * 359.81041 * 25 24 23 27 27 C 1.38230 * 119.99845 * 18.48565 * 22 20 19 28 28 C 1.47814 * 134.45633 * 354.11586 * 9 7 2 29 29 H 0.97005 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.76955 * 41.06531 * 10 9 7 31 31 H 1.09003 * 113.77447 * 269.66003 * 10 9 7 32 32 H 1.09001 * 113.74030 * 269.16146 * 11 10 9 33 33 H 0.97001 * 119.99681 * 336.92392 * 12 11 10 34 34 H 1.08997 * 109.82909 * 143.45054 * 17 15 13 35 35 H 1.08995 * 109.90356 * 22.51943 * 17 15 13 36 36 H 1.09003 * 110.31154 * 94.48488 * 19 18 17 37 37 H 1.08999 * 110.30809 * 216.55563 * 19 18 17 38 38 H 1.08001 * 120.00133 * 359.97438 * 23 22 20 39 39 H 1.07996 * 120.00206 * 180.26759 * 24 23 22 40 40 H 1.07995 * 119.99918 * 179.83271 * 25 24 23 41 41 H 1.08006 * 120.00065 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.00595 * 359.97438 * 27 22 20 43 43 H 1.09001 * 113.76899 * 90.38110 * 28 9 7 44 44 H 1.08996 * 113.83798 * 318.91532 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6019 1.9862 -1.3949 5 1 1.3996 2.6805 0.5933 6 1 3.4918 1.4723 0.8016 7 6 2.0102 -1.2022 0.0005 8 1 3.0847 -1.2054 -0.1086 9 7 1.3325 -2.3840 0.1393 10 6 1.7140 -3.8083 0.0785 11 6 0.4836 -4.0677 0.9668 12 7 -0.2913 -5.2465 0.5714 13 6 -1.0807 -5.8667 1.4706 14 8 -1.1492 -5.4491 2.6072 15 6 -1.8783 -7.0788 1.0638 16 1 -1.8066 -7.2454 -0.0110 17 6 -3.3523 -6.9388 1.5010 18 8 -3.5046 -7.6405 2.7405 19 6 -2.2414 -8.1850 3.1544 20 6 -1.4181 -8.3392 1.8509 21 1 -1.6877 -9.2532 1.3218 22 6 0.0614 -8.2954 2.1345 23 6 0.9540 -8.0378 1.1110 24 6 2.3108 -7.9931 1.3720 25 6 2.7754 -8.2151 2.6548 26 6 1.8832 -8.4779 3.6773 27 6 0.5261 -8.5182 3.4172 28 6 -0.0747 -2.7444 0.4126 29 1 -0.4850 0.8401 -0.0004 30 1 2.6629 -4.0302 0.5667 31 1 1.6354 -4.2420 -0.9185 32 1 0.6998 -4.0398 2.0348 33 1 -0.2362 -5.5805 -0.3376 34 1 -4.0052 -7.3763 0.7458 35 1 -3.6000 -5.8864 1.6390 36 1 -1.7406 -7.5009 3.8394 37 1 -2.3851 -9.1561 3.6283 38 1 0.5912 -7.8683 0.1080 39 1 3.0079 -7.7875 0.5732 40 1 3.8356 -8.1829 2.8582 41 1 2.2462 -8.6510 4.6797 42 1 -0.1710 -8.7233 4.2161 43 1 -0.6798 -2.8650 -0.4860 44 1 -0.5512 -2.1185 1.1671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030557823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:53 Heat of formation + Delta-G solvation = -17.124858 kcal Electronic energy + Delta-G solvation = -27032.028317 eV Core-core repulsion = 23336.251575 eV Total energy + Delta-G solvation = -3695.776742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95808 -40.24273 -39.46363 -38.63582 -35.14131 -34.48142 -33.70622 -32.00070 -31.39482 -29.42933 -29.18618 -26.64462 -25.69918 -24.62970 -23.97717 -23.02695 -21.81733 -21.37119 -20.70662 -18.80810 -18.69147 -18.09311 -17.22827 -17.07836 -16.82449 -16.37057 -16.19327 -15.90630 -15.76213 -15.68454 -15.21647 -14.75555 -14.58773 -14.18187 -14.12261 -13.78838 -13.63019 -13.29503 -13.23096 -13.08718 -12.96355 -12.81114 -12.60815 -12.51260 -12.36971 -12.25349 -11.99654 -11.83871 -11.64846 -11.52461 -10.86663 -10.68514 -10.51550 -9.94618 -9.71826 -9.57205 -8.99240 -7.95862 -5.28988 0.47658 0.56218 1.43967 1.47136 1.55362 1.62129 2.14891 2.49000 2.81700 2.91631 3.25030 3.33792 3.35858 3.62595 3.78778 3.86886 3.94661 4.10166 4.14444 4.20119 4.28275 4.33022 4.33387 4.36206 4.51488 4.66444 4.71621 4.74269 4.74757 4.82225 4.84698 4.90522 5.04655 5.13555 5.16719 5.18965 5.22051 5.44140 5.60709 5.65810 5.68551 5.71457 5.86337 5.98258 6.16310 6.65314 6.85879 7.35362 7.56348 8.49933 9.22421 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003731 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.881829 B = 7502.246847 C = 8631.100023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.090 0.910 9 N -0.638 5.638 10 C 0.126 3.874 11 C 0.128 3.872 12 N -0.697 5.697 13 C 0.522 3.478 14 O -0.579 6.579 15 C -0.134 4.134 16 H 0.150 0.850 17 C 0.067 3.933 18 O -0.398 6.398 19 C 0.054 3.946 20 C -0.054 4.054 21 H 0.141 0.859 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.128 4.128 28 C 0.159 3.841 29 H 0.249 0.751 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.414 0.586 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -24.142 0.085 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.365 4.365 8 H 0.107 0.893 9 N -0.365 5.365 10 C 0.001 3.999 11 C 0.022 3.978 12 N -0.348 5.348 13 C 0.309 3.691 14 O -0.458 6.458 15 C -0.155 4.155 16 H 0.167 0.833 17 C -0.010 4.010 18 O -0.318 6.318 19 C -0.022 4.022 20 C -0.072 4.072 21 H 0.159 0.841 22 C -0.088 4.088 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.146 4.146 28 C 0.032 3.968 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.046 0.954 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.565 -23.527 0.980 23.554 hybrid contribution 0.459 1.534 -0.305 1.630 sum -0.106 -21.994 0.675 22.004 Atomic orbital electron populations 1.70036 1.06726 1.25818 1.57800 1.25704 0.96475 1.01232 1.02590 0.85078 0.77538 0.78694 0.77914 1.20595 1.22317 1.19289 1.19411 0.91294 0.83145 1.42648 0.89259 1.46110 1.06082 1.00891 1.83431 1.22955 0.96062 0.83581 0.97336 1.22967 0.92255 0.83843 0.98761 1.45866 1.45098 1.29338 1.14539 1.20765 0.79128 0.84351 0.84817 1.90701 1.65901 1.67367 1.21806 1.23078 0.95204 0.92352 1.04908 0.83258 1.23124 0.93959 0.97088 0.86783 1.88352 1.31225 1.72199 1.40032 1.23618 0.83227 0.99037 0.96283 1.21780 0.91436 0.97791 0.96213 0.84119 1.19641 0.94270 1.00749 0.94162 1.21177 0.93181 0.99583 0.99385 1.21399 0.96046 0.99241 0.97430 1.21438 1.00513 0.99722 0.93449 1.21377 0.93427 1.00190 1.00007 1.21236 0.96163 1.00632 0.96582 1.22476 0.87464 0.91111 0.95716 0.94261 0.92060 0.91635 0.89897 0.74879 0.86664 0.93362 0.93473 0.87404 0.84224 0.84447 0.84868 0.84991 0.85644 0.95393 0.96451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.23 11.69 21.65 0.25 -58.97 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.24 -13.33 10.69 84.03 0.90 -12.43 16 8 H 0.09 4.73 7.84 -2.91 -0.02 4.70 16 9 N -0.64 -32.69 3.69 -716.62 -2.65 -35.33 16 10 C 0.13 4.71 8.69 86.49 0.75 5.47 16 11 C 0.13 4.88 4.40 46.75 0.21 5.08 16 12 N -0.70 -19.22 4.95 -447.35 -2.22 -21.44 16 13 C 0.52 15.05 4.67 87.66 0.41 15.46 16 14 O -0.58 -22.83 15.13 -3.03 -0.05 -22.88 16 15 C -0.13 -2.51 2.89 -10.19 -0.03 -2.54 16 16 H 0.15 1.49 8.00 -2.39 -0.02 1.47 16 17 C 0.07 1.43 7.17 72.45 0.52 1.95 16 18 O -0.40 -10.17 11.36 -148.98 -1.69 -11.87 16 19 C 0.05 1.18 5.53 72.65 0.40 1.58 16 20 C -0.05 -0.91 3.33 -9.99 -0.03 -0.95 16 21 H 0.14 1.49 8.14 -2.39 -0.02 1.48 16 22 C -0.09 -1.77 4.43 -19.87 -0.09 -1.85 16 23 C -0.12 -2.12 8.07 22.27 0.18 -1.94 16 24 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 25 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 26 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 27 C -0.13 -2.78 8.92 22.27 0.20 -2.58 16 28 C 0.16 7.79 7.14 86.44 0.62 8.41 16 29 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 32 H 0.08 3.63 7.51 -2.39 -0.02 3.61 16 33 H 0.41 8.22 8.61 -92.71 -0.80 7.42 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.28 7.83 -2.39 -0.02 1.26 16 36 H 0.05 1.32 6.24 -2.39 -0.01 1.31 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.14 1.85 7.84 -2.91 -0.02 1.83 16 39 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.13 2.47 6.49 -2.91 -0.02 2.45 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.02 0.99 7.61 -2.39 -0.02 0.97 16 Total: -1.00 -78.82 358.54 1.06 -77.76 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.21 Total: 19.43 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.17 Total: 5.13 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.61 Total: -115.74 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.74 Total: -34.74 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -78.82 1.06 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030557823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.634 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds