Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48504 * 109.46893 * 270.00116 * 3 2 1 5 5 H 1.48502 * 109.46913 * 30.00010 * 3 2 1 6 6 H 1.48497 * 109.47206 * 150.00035 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00235 * 187.26291 * 7 2 1 9 9 N 1.36943 * 119.99967 * 7.26327 * 7 2 1 10 10 C 1.44773 * 120.02964 * 210.42464 * 9 7 2 11 11 C 1.51425 * 112.64461 * 264.14177 * 10 9 7 12 12 C 1.51755 * 112.77875 * 286.01920 * 11 10 9 13 13 H 1.08999 * 112.09169 * 187.27474 * 12 11 10 14 14 C 1.55214 * 103.54703 * 308.34084 * 12 11 10 15 15 C 1.53954 * 105.23201 * 98.13930 * 14 12 11 16 16 C 1.49966 * 105.25518 * 359.70107 * 15 14 12 17 17 H 1.08996 * 104.93158 * 129.84903 * 16 15 14 18 18 C 1.50409 * 120.03109 * 30.39787 * 9 7 2 19 19 N 1.48041 * 108.64680 * 62.38070 * 12 11 10 20 20 C 1.34778 * 127.78723 * 95.61644 * 19 12 11 21 21 O 1.21591 * 119.99456 * 359.88684 * 20 19 12 22 22 C 1.47532 * 120.00201 * 179.88926 * 20 19 12 23 23 C 1.39703 * 120.19347 * 5.91566 * 22 20 19 24 24 C 1.37789 * 119.91111 * 179.97438 * 23 22 20 25 25 C 1.38553 * 120.29642 * 0.02562 * 24 23 22 26 26 C 1.38053 * 120.39266 * 359.97438 * 25 24 23 27 27 C 1.38711 * 120.08010 * 359.74571 * 26 25 24 28 28 O 1.35658 * 120.14827 * 180.27737 * 27 26 25 29 29 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.09006 * 108.84764 * 143.32787 * 10 9 7 31 31 H 1.08997 * 108.76670 * 24.90615 * 10 9 7 32 32 H 1.09005 * 108.82260 * 165.16708 * 11 10 9 33 33 H 1.09000 * 108.73916 * 46.81149 * 11 10 9 34 34 H 1.09000 * 110.29404 * 217.08081 * 14 12 11 35 35 H 1.09002 * 110.29017 * 339.20356 * 14 12 11 36 36 H 1.09008 * 110.28560 * 118.64474 * 15 14 12 37 37 H 1.09001 * 110.29141 * 240.75395 * 15 14 12 38 38 H 1.09000 * 109.52782 * 270.52944 * 18 9 7 39 39 H 1.09005 * 109.52429 * 30.65307 * 18 9 7 40 40 H 1.08000 * 120.04337 * 359.95558 * 23 22 20 41 41 H 1.07999 * 119.85356 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.79911 * 180.02562 * 25 24 23 43 43 H 1.07996 * 119.96201 * 180.02562 * 26 25 24 44 44 H 0.96698 * 113.99930 * 270.25417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0837 -1.2060 0.1177 9 7 1.3338 -2.3833 -0.1510 10 6 1.8386 -3.5912 0.4671 11 6 2.6703 -4.4280 -0.4821 12 6 1.8296 -5.1529 -1.5169 13 1 2.4216 -5.8484 -2.1118 14 6 0.7535 -5.8797 -0.6667 15 6 -0.4904 -4.9747 -0.7290 16 6 -0.0855 -3.8053 -1.5761 17 1 -0.8763 -3.7103 -2.3201 18 6 0.0653 -2.4267 -0.9581 19 7 1.1332 -4.1468 -2.3501 20 6 1.5195 -3.6519 -3.5427 21 8 2.5557 -4.0329 -4.0521 22 6 0.6852 -2.6478 -4.2300 23 6 -0.4398 -2.1158 -3.5952 24 6 -1.2146 -1.1779 -4.2423 25 6 -0.8835 -0.7597 -5.5210 26 6 0.2256 -1.2772 -6.1598 27 6 1.0200 -2.2178 -5.5210 28 8 2.1133 -2.7231 -6.1453 29 1 -0.4850 0.8401 -0.0004 30 1 0.9952 -4.1874 0.8156 31 1 2.4528 -3.3160 1.3245 32 1 3.2290 -5.1644 0.0956 33 1 3.3764 -3.7763 -0.9966 34 1 0.5313 -6.8576 -1.0938 35 1 1.0933 -5.9848 0.3636 36 1 -1.3219 -5.5065 -1.1916 37 1 -0.7646 -4.6397 0.2713 38 1 -0.7866 -2.2234 -0.3091 39 1 0.1095 -1.6758 -1.7470 40 1 -0.7021 -2.4394 -2.5988 41 1 -2.0839 -0.7669 -3.7506 42 1 -1.4962 -0.0238 -6.0206 43 1 0.4775 -0.9459 -7.1564 44 1 1.9355 -3.5158 -6.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039334797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = 39.950619 kcal Electronic energy + Delta-G solvation = -28754.478309 eV Core-core repulsion = 25061.176546 eV Total energy + Delta-G solvation = -3693.301764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88556 -39.20364 -37.32963 -36.42464 -34.55133 -33.52649 -31.39885 -31.19037 -30.16693 -29.51650 -27.19249 -25.86227 -24.09137 -23.47522 -22.56728 -21.36638 -21.02349 -19.34808 -18.70634 -17.80977 -17.29442 -16.41751 -15.84345 -15.60906 -15.22410 -15.02884 -14.77474 -14.39615 -14.13057 -13.84948 -13.47189 -13.22231 -13.01907 -12.71023 -12.55128 -12.15663 -12.03122 -12.02088 -11.61506 -11.46195 -11.23104 -11.15644 -10.82687 -10.75672 -10.61463 -10.53379 -10.37814 -10.08373 -9.90389 -9.74401 -9.46084 -9.19642 -8.69395 -8.53595 -8.37505 -7.98243 -6.64379 -5.79561 -3.25435 1.13140 1.53015 3.27230 3.38724 3.42555 3.45004 3.47341 4.07396 4.44747 4.48335 4.67049 4.79999 5.03701 5.13528 5.17345 5.23687 5.34836 5.43715 5.52254 5.59036 5.65073 5.70364 5.76116 5.88537 5.95395 6.03055 6.07347 6.12833 6.18319 6.30489 6.42527 6.45519 6.49330 6.51883 6.61878 6.69556 6.77175 6.83898 6.99727 7.03550 7.21329 7.38339 7.81276 7.93640 8.10616 8.42759 8.72646 9.17527 9.82895 10.37626 11.29223 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.008040 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.218857 B = 3481.819553 C = 5005.437808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.009 3.991 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.152 3.848 11 C -0.161 4.161 12 C 0.140 3.860 13 H 0.087 0.913 14 C -0.128 4.128 15 C -0.114 4.114 16 C 0.088 3.912 17 H 0.066 0.934 18 C 0.149 3.851 19 N -0.589 5.589 20 C 0.586 3.414 21 O -0.540 6.540 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.084 4.084 26 C -0.168 4.168 27 C 0.159 3.841 28 O -0.477 6.477 29 H 0.253 0.747 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.191 0.809 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -9.170 -6.641 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.189 4.189 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.025 3.975 11 C -0.202 4.202 12 C 0.037 3.963 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.016 4.016 17 H 0.083 0.917 18 C 0.025 3.975 19 N -0.322 5.322 20 C 0.377 3.623 21 O -0.419 6.419 22 C -0.159 4.159 23 C -0.125 4.125 24 C -0.155 4.155 25 C -0.103 4.103 26 C -0.186 4.186 27 C 0.113 3.887 28 O -0.287 6.287 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.207 0.793 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.173 -8.710 -6.736 12.166 hybrid contribution 0.352 0.832 -0.315 0.957 sum -4.821 -7.878 -7.051 11.620 Atomic orbital electron populations 1.69892 1.05030 1.25333 1.55266 1.25065 0.95456 0.98007 1.00380 0.86325 0.79165 0.83810 0.77744 1.21485 1.21610 1.20467 1.19137 0.90387 0.83835 1.44381 0.92043 1.44096 1.25871 1.03981 1.56846 1.20191 0.95807 0.88352 0.93195 1.22298 0.99854 0.99609 0.98426 1.21677 0.94047 0.89915 0.90658 0.89537 1.22767 0.95141 0.97961 1.00727 1.21516 0.97535 0.95007 1.01169 1.22151 0.86752 0.97625 0.95068 0.91694 1.22164 0.90733 0.89421 0.95149 1.48692 1.24328 1.41207 1.17934 1.17465 0.84890 0.80785 0.79184 1.90747 1.24314 1.60901 1.65917 1.20310 0.98046 1.01386 0.96173 1.23461 0.92393 0.94609 1.02048 1.21177 1.01006 0.98438 0.94922 1.21188 0.95997 0.98061 0.95014 1.21303 0.95937 1.00318 1.01072 1.18486 0.85956 0.93936 0.90310 1.84797 1.30087 1.46854 1.66955 0.93685 0.94385 0.93456 0.92478 0.92155 0.91917 0.89748 0.91163 0.89546 0.92340 0.89419 0.79324 0.85260 0.85716 0.85353 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.97 10.93 55.49 0.61 -24.37 16 2 C 0.01 0.25 5.20 -17.43 -0.09 0.16 16 3 Si 0.90 22.18 29.56 -169.99 -5.02 17.15 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.77 9.55 -15.06 -0.14 -6.92 16 8 H 0.06 1.73 7.84 -52.49 -0.41 1.31 16 9 N -0.58 -14.01 2.90 -173.01 -0.50 -14.51 16 10 C 0.15 3.05 5.25 -5.76 -0.03 3.02 16 11 C -0.16 -2.94 4.95 -28.16 -0.14 -3.08 16 12 C 0.14 2.37 4.00 -66.54 -0.27 2.10 16 13 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 14 C -0.13 -1.68 5.93 -25.06 -0.15 -1.83 16 15 C -0.11 -1.57 5.81 -27.74 -0.16 -1.73 16 16 C 0.09 1.51 1.84 -69.01 -0.13 1.39 16 17 H 0.07 1.04 5.29 -51.93 -0.27 0.76 16 18 C 0.15 3.23 3.64 -2.45 -0.01 3.22 16 19 N -0.59 -11.14 2.57 -159.03 -0.41 -11.54 16 20 C 0.59 12.31 7.83 -12.47 -0.10 12.22 16 21 O -0.54 -12.54 15.59 -16.52 -0.26 -12.79 16 22 C -0.16 -3.00 5.88 -104.85 -0.62 -3.62 16 23 C -0.11 -1.93 6.56 -39.20 -0.26 -2.19 16 24 C -0.14 -2.13 10.02 -39.63 -0.40 -2.53 16 25 C -0.08 -1.17 10.03 -39.53 -0.40 -1.57 16 26 C -0.17 -2.48 9.98 -39.47 -0.39 -2.87 16 27 C 0.16 2.81 6.71 -38.69 -0.26 2.55 16 28 O -0.48 -8.22 11.59 -40.48 -0.47 -8.69 16 29 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.04 0.68 4.23 -51.93 -0.22 0.46 16 31 H 0.05 0.98 7.95 -51.93 -0.41 0.57 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.03 6.56 -51.93 -0.34 0.69 16 36 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.09 1.20 7.11 -51.93 -0.37 0.83 16 38 H 0.06 1.35 7.52 -51.93 -0.39 0.96 16 39 H 0.09 2.10 4.23 -51.93 -0.22 1.88 16 40 H 0.19 3.42 1.72 -52.59 -0.09 3.33 16 41 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.39 4.77 9.06 45.56 0.41 5.18 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -33.13 332.28 -9.41 -42.54 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.83 Total: 8.87 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.53 Total: -1.67 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.30 Total: -50.42 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.73 Total: -21.48 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.13 -9.41 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039334797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.490 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds