Wall clock time and date at job start Tue Mar 31 2020 11:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48504 * 109.46893 * 270.00116 * 3 2 1 5 5 H 1.48502 * 109.46913 * 30.00010 * 3 2 1 6 6 H 1.48497 * 109.47206 * 150.00035 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00235 * 187.26291 * 7 2 1 9 9 N 1.36943 * 119.99967 * 7.26327 * 7 2 1 10 10 C 1.44773 * 120.02964 * 210.42464 * 9 7 2 11 11 C 1.51425 * 112.64461 * 264.14177 * 10 9 7 12 12 C 1.51755 * 112.77875 * 286.01920 * 11 10 9 13 13 H 1.08999 * 112.09169 * 187.27474 * 12 11 10 14 14 C 1.55214 * 103.54703 * 308.34084 * 12 11 10 15 15 C 1.53954 * 105.23201 * 98.13930 * 14 12 11 16 16 C 1.49966 * 105.25518 * 359.70107 * 15 14 12 17 17 H 1.08996 * 104.93158 * 129.84903 * 16 15 14 18 18 C 1.50409 * 120.03109 * 30.39787 * 9 7 2 19 19 N 1.48041 * 108.64680 * 62.38070 * 12 11 10 20 20 C 1.34778 * 127.78723 * 95.61644 * 19 12 11 21 21 O 1.21591 * 119.99456 * 359.88684 * 20 19 12 22 22 C 1.47532 * 120.00201 * 179.88926 * 20 19 12 23 23 C 1.39703 * 120.19347 * 5.91566 * 22 20 19 24 24 C 1.37789 * 119.91111 * 179.97438 * 23 22 20 25 25 C 1.38553 * 120.29642 * 0.02562 * 24 23 22 26 26 C 1.38053 * 120.39266 * 359.97438 * 25 24 23 27 27 C 1.38711 * 120.08010 * 359.74571 * 26 25 24 28 28 O 1.35658 * 120.14827 * 180.27737 * 27 26 25 29 29 H 0.97002 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.09006 * 108.84764 * 143.32787 * 10 9 7 31 31 H 1.08997 * 108.76670 * 24.90615 * 10 9 7 32 32 H 1.09005 * 108.82260 * 165.16708 * 11 10 9 33 33 H 1.09000 * 108.73916 * 46.81149 * 11 10 9 34 34 H 1.09000 * 110.29404 * 217.08081 * 14 12 11 35 35 H 1.09002 * 110.29017 * 339.20356 * 14 12 11 36 36 H 1.09008 * 110.28560 * 118.64474 * 15 14 12 37 37 H 1.09001 * 110.29141 * 240.75395 * 15 14 12 38 38 H 1.09000 * 109.52782 * 270.52944 * 18 9 7 39 39 H 1.09005 * 109.52429 * 30.65307 * 18 9 7 40 40 H 1.08000 * 120.04337 * 359.95558 * 23 22 20 41 41 H 1.07999 * 119.85356 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.79911 * 180.02562 * 25 24 23 43 43 H 1.07996 * 119.96201 * 180.02562 * 26 25 24 44 44 H 0.96698 * 113.99930 * 270.25417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0837 -1.2060 0.1177 9 7 1.3338 -2.3833 -0.1510 10 6 1.8386 -3.5912 0.4671 11 6 2.6703 -4.4280 -0.4821 12 6 1.8296 -5.1529 -1.5169 13 1 2.4216 -5.8484 -2.1118 14 6 0.7535 -5.8797 -0.6667 15 6 -0.4904 -4.9747 -0.7290 16 6 -0.0855 -3.8053 -1.5761 17 1 -0.8763 -3.7103 -2.3201 18 6 0.0653 -2.4267 -0.9581 19 7 1.1332 -4.1468 -2.3501 20 6 1.5195 -3.6519 -3.5427 21 8 2.5557 -4.0329 -4.0521 22 6 0.6852 -2.6478 -4.2300 23 6 -0.4398 -2.1158 -3.5952 24 6 -1.2146 -1.1779 -4.2423 25 6 -0.8835 -0.7597 -5.5210 26 6 0.2256 -1.2772 -6.1598 27 6 1.0200 -2.2178 -5.5210 28 8 2.1133 -2.7231 -6.1453 29 1 -0.4850 0.8401 -0.0004 30 1 0.9952 -4.1874 0.8156 31 1 2.4528 -3.3160 1.3245 32 1 3.2290 -5.1644 0.0956 33 1 3.3764 -3.7763 -0.9966 34 1 0.5313 -6.8576 -1.0938 35 1 1.0933 -5.9848 0.3636 36 1 -1.3219 -5.5065 -1.1916 37 1 -0.7646 -4.6397 0.2713 38 1 -0.7866 -2.2234 -0.3091 39 1 0.1095 -1.6758 -1.7470 40 1 -0.7021 -2.4394 -2.5988 41 1 -2.0839 -0.7669 -3.7506 42 1 -1.4962 -0.0238 -6.0206 43 1 0.4775 -0.9459 -7.1564 44 1 1.9355 -3.5158 -6.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039334797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:30 Heat of formation + Delta-G solvation = 18.789464 kcal Electronic energy + Delta-G solvation = -28755.395926 eV Core-core repulsion = 25061.176546 eV Total energy + Delta-G solvation = -3694.219380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29097 -40.50662 -38.86737 -37.70862 -36.34814 -34.96142 -33.13035 -32.71266 -31.50356 -30.77965 -28.86148 -27.36684 -25.82272 -24.93846 -23.83184 -22.75594 -22.40734 -20.93459 -20.13050 -19.10426 -18.85996 -18.06178 -17.29996 -17.04195 -16.91679 -16.33773 -16.16890 -15.98885 -15.61366 -15.30203 -15.00749 -14.84642 -14.44244 -14.17772 -13.95551 -13.62855 -13.38622 -13.28707 -13.24656 -12.90788 -12.81610 -12.68023 -12.50144 -12.40109 -12.31433 -12.00749 -11.76639 -11.70621 -11.55705 -11.28484 -10.95213 -10.66482 -10.58855 -9.97360 -9.67859 -9.44350 -8.58811 -7.86070 -5.32949 -0.16906 0.29804 1.38290 1.41611 1.47793 1.82801 2.04620 2.47293 2.76578 3.21428 3.25600 3.36988 3.51738 3.76716 3.79435 3.96231 4.05661 4.11221 4.18568 4.23669 4.34012 4.44118 4.49677 4.60524 4.68871 4.72704 4.78704 4.89785 4.91537 5.02842 5.07575 5.10697 5.17928 5.24276 5.29851 5.33879 5.38226 5.46269 5.50933 5.57843 5.65333 5.71188 5.82993 6.39559 6.61985 6.79805 7.16804 7.19402 7.88372 8.37644 9.18550 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.008040 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.218857 B = 3481.819553 C = 5005.437808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.030 4.030 3 Si 0.946 3.054 4 H -0.297 1.297 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.041 0.959 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.149 4.149 12 C 0.129 3.871 13 H 0.086 0.914 14 C -0.114 4.114 15 C -0.111 4.111 16 C 0.090 3.910 17 H 0.081 0.919 18 C 0.159 3.841 19 N -0.591 5.591 20 C 0.573 3.427 21 O -0.579 6.579 22 C -0.190 4.190 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.071 4.071 26 C -0.164 4.164 27 C 0.143 3.857 28 O -0.495 6.495 29 H 0.252 0.748 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.009 0.991 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.183 0.817 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.158 0.842 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 -9.965 -7.043 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.226 4.226 3 Si 0.776 3.224 4 H -0.224 1.224 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.059 0.941 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.104 0.896 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.013 4.013 17 H 0.099 0.901 18 C 0.035 3.965 19 N -0.322 5.322 20 C 0.364 3.636 21 O -0.461 6.461 22 C -0.193 4.193 23 C -0.137 4.137 24 C -0.163 4.163 25 C -0.089 4.089 26 C -0.182 4.182 27 C 0.097 3.903 28 O -0.307 6.307 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.028 0.972 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.199 0.801 41 H 0.166 0.834 42 H 0.184 0.816 43 H 0.176 0.824 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.056 -9.542 -7.112 13.836 hybrid contribution 0.958 1.105 -0.226 1.480 sum -6.098 -8.437 -7.339 12.737 Atomic orbital electron populations 1.69990 1.05377 1.25507 1.55614 1.25546 0.96292 0.99939 1.00858 0.85596 0.78422 0.81364 0.77023 1.22420 1.20778 1.20411 1.19210 0.89906 0.85782 1.44437 0.94119 1.44339 1.26338 1.04109 1.57797 1.20357 0.96778 0.87691 0.92974 1.22192 0.99014 0.99322 0.98474 1.21921 0.95383 0.89724 0.90398 0.89577 1.22737 0.93077 0.98576 1.00850 1.21606 0.98850 0.93593 1.00816 1.22096 0.86622 0.96865 0.95701 0.90141 1.21949 0.88910 0.91759 0.93843 1.48817 1.24857 1.41029 1.17509 1.17942 0.84776 0.80977 0.79856 1.90694 1.25862 1.62381 1.67142 1.20431 0.99071 1.02473 0.97357 1.23421 0.92618 0.95702 1.02005 1.21499 1.01285 0.97754 0.95765 1.21656 0.95553 0.97520 0.94159 1.21643 0.95411 0.98959 1.02183 1.18815 0.86447 0.94837 0.90222 1.84734 1.30758 1.47935 1.67284 0.93875 0.91306 0.94827 0.89180 0.97163 0.88820 0.88223 0.87729 0.89298 0.94021 0.91963 0.80129 0.83365 0.81590 0.82429 0.73776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 10.93 21.65 0.24 -50.81 16 2 C -0.03 -1.65 5.20 84.86 0.44 -1.21 16 3 Si 0.95 46.36 29.56 68.60 2.03 48.38 16 4 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.26 -14.86 9.55 84.03 0.80 -14.06 16 8 H 0.04 2.41 7.84 -2.91 -0.02 2.39 16 9 N -0.60 -29.49 2.90 -701.28 -2.03 -31.52 16 10 C 0.15 5.95 5.25 86.19 0.45 6.40 16 11 C -0.15 -5.46 4.95 29.67 0.15 -5.31 16 12 C 0.13 4.22 4.00 45.05 0.18 4.40 16 13 H 0.09 2.83 8.09 -2.39 -0.02 2.81 16 14 C -0.11 -2.60 5.93 31.68 0.19 -2.41 16 15 C -0.11 -2.68 5.81 29.94 0.17 -2.51 16 16 C 0.09 3.04 1.84 43.27 0.08 3.12 16 17 H 0.08 2.49 5.29 -2.39 -0.01 2.48 16 18 C 0.16 6.96 3.64 85.23 0.31 7.27 16 19 N -0.59 -22.44 2.57 -775.30 -1.99 -24.43 16 20 C 0.57 24.86 7.83 86.69 0.68 25.54 16 21 O -0.58 -28.07 15.59 16.85 0.26 -27.81 16 22 C -0.19 -7.47 5.88 -20.01 -0.12 -7.59 16 23 C -0.12 -4.30 6.56 22.52 0.15 -4.15 16 24 C -0.15 -4.28 10.02 22.24 0.22 -4.06 16 25 C -0.07 -1.77 10.03 22.30 0.22 -1.55 16 26 C -0.16 -4.51 9.98 22.34 0.22 -4.29 16 27 C 0.14 5.04 6.71 22.84 0.15 5.20 16 28 O -0.49 -17.34 11.59 -68.89 -0.80 -18.14 16 29 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.07 2.34 4.23 -2.38 -0.01 2.33 16 31 H 0.03 1.41 7.95 -2.39 -0.02 1.39 16 32 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.00 6.56 -2.39 -0.02 1.98 16 36 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.16 7.11 -2.39 -0.02 2.14 16 38 H 0.04 1.94 7.52 -2.39 -0.02 1.93 16 39 H 0.06 3.06 4.23 -2.38 -0.01 3.05 16 40 H 0.18 6.61 1.72 -3.01 -0.01 6.61 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 44 H 0.40 10.20 9.06 -74.06 -0.67 9.53 16 Total: -1.00 -75.77 332.28 2.39 -73.38 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.38 Total: 26.17 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.31 Total: 4.78 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.79 Total: -106.77 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.54 Total: -45.95 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.77 2.39 -73.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039334797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.171 kcal (2) G-P(sol) polarization free energy of solvation -75.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds