Wall clock time and date at job start Tue Mar 31 2020 11:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48498 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47392 * 299.99969 * 3 2 1 6 6 H 1.48506 * 109.46957 * 60.00240 * 3 2 1 7 7 C 1.38819 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99573 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99705 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88651 * 336.34156 * 10 9 7 12 12 C 1.54247 * 113.75389 * 107.77125 * 10 9 7 13 13 C 1.53952 * 87.19136 * 139.21239 * 12 10 9 14 14 H 1.09002 * 113.66200 * 89.79013 * 13 12 10 15 15 N 1.46505 * 113.66487 * 220.75611 * 13 12 10 16 16 C 1.34779 * 119.99522 * 253.98749 * 15 13 12 17 17 O 1.21589 * 119.99946 * 359.97438 * 16 15 13 18 18 C 1.47531 * 119.99641 * 179.97438 * 16 15 13 19 19 C 1.39710 * 120.19545 * 359.72099 * 18 16 15 20 20 C 1.37791 * 119.90738 * 179.74766 * 19 18 16 21 21 C 1.38538 * 120.30235 * 0.55422 * 20 19 18 22 22 C 1.38060 * 120.38918 * 359.69921 * 21 20 19 23 23 C 1.38710 * 120.08647 * 0.02562 * 22 21 20 24 24 O 1.35649 * 120.15018 * 180.02562 * 23 22 21 25 25 C 1.52907 * 113.66104 * 204.99815 * 10 9 7 26 26 C 1.52916 * 121.13615 * 346.25326 * 25 10 9 27 27 C 1.53950 * 86.78251 * 100.82129 * 26 25 10 28 28 C 1.52914 * 121.13836 * 94.81338 * 25 10 9 29 29 H 0.96999 * 120.00055 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00305 * 359.97438 * 9 7 2 31 31 H 1.09005 * 113.57594 * 24.66172 * 12 10 9 32 32 H 1.09001 * 113.67062 * 253.78328 * 12 10 9 33 33 H 0.96993 * 120.00241 * 73.98235 * 15 13 12 34 34 H 1.07999 * 120.04094 * 0.02562 * 19 18 16 35 35 H 1.08001 * 119.84341 * 180.27917 * 20 19 18 36 36 H 1.07994 * 119.80609 * 179.72287 * 21 20 19 37 37 H 1.08005 * 119.95604 * 180.02562 * 22 21 20 38 38 H 0.96705 * 113.99781 * 269.97663 * 24 23 22 39 39 H 1.08997 * 113.65977 * 215.29117 * 26 25 10 40 40 H 1.09000 * 113.66072 * 346.34954 * 26 25 10 41 41 H 1.09002 * 113.57610 * 270.13352 * 27 26 25 42 42 H 1.08995 * 113.65482 * 139.34771 * 27 26 25 43 43 H 1.08999 * 113.66109 * 13.65141 * 28 25 10 44 44 H 1.08997 * 113.65871 * 144.70914 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0669 -3.5638 -0.4038 12 6 1.9945 -4.4109 1.3424 13 6 1.8266 -5.7033 0.5228 14 1 2.7704 -6.1855 0.2681 15 7 0.8453 -6.6337 1.0864 16 6 1.2599 -7.7554 1.7081 17 8 2.4483 -7.9953 1.8007 18 6 0.2717 -8.6921 2.2761 19 6 -1.0946 -8.4176 2.1770 20 6 -2.0125 -9.2991 2.7051 21 6 -1.5868 -10.4520 3.3446 22 6 -0.2395 -10.7329 3.4542 23 6 0.6983 -9.8595 2.9234 24 8 2.0224 -10.1346 3.0299 25 6 1.2661 -4.8227 -0.5946 26 6 -0.2401 -4.7140 -0.8355 27 6 0.1026 -4.4598 -2.3147 28 6 1.4196 -5.2166 -2.0641 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 1.1204 -4.1588 1.9429 32 1 2.9242 -4.3724 1.9102 33 1 -0.1027 -6.4425 1.0122 34 1 -1.4308 -7.5178 1.6833 35 1 -3.0686 -9.0881 2.6239 36 1 -2.3131 -11.1351 3.7595 37 1 0.0846 -11.6339 3.9538 38 1 2.4351 -9.7782 3.8286 39 1 -0.7786 -5.6462 -0.6652 40 1 -0.7018 -3.8598 -0.3403 41 1 0.2442 -3.4060 -2.5545 42 1 -0.5653 -4.9660 -3.0115 43 1 2.2837 -4.7638 -2.5504 44 1 1.3475 -6.2900 -2.2390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078561172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:14 Heat of formation + Delta-G solvation = 7.780319 kcal Electronic energy + Delta-G solvation = -26352.659960 eV Core-core repulsion = 22657.963187 eV Total energy + Delta-G solvation = -3694.696773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80624 -40.02847 -38.20760 -36.87438 -34.82841 -34.11134 -32.69550 -31.26069 -30.06684 -29.70617 -25.51043 -25.06893 -24.16167 -23.83367 -22.85789 -21.88698 -20.46323 -20.33028 -18.79136 -18.01580 -17.64879 -16.84636 -16.37202 -15.92549 -15.49579 -15.28833 -15.06014 -14.66789 -14.57852 -14.40131 -14.16926 -13.68905 -13.01716 -12.77308 -12.65116 -12.48377 -12.39404 -12.08450 -11.97432 -11.83946 -11.51159 -11.24204 -10.93955 -10.90518 -10.79371 -10.70691 -10.18485 -10.04748 -9.92464 -9.86386 -9.58258 -9.43435 -9.35550 -8.97816 -8.87254 -8.60275 -6.99156 -5.82307 -3.10441 0.56588 0.94515 2.80093 3.24675 3.40677 3.47459 3.48934 3.55106 3.99872 4.49488 4.52549 4.57154 4.68992 4.80318 4.93225 5.01857 5.05961 5.07480 5.24181 5.25537 5.42822 5.43966 5.52035 5.68089 5.87940 5.88956 5.89165 5.96993 5.99804 6.01927 6.07119 6.08242 6.22831 6.33075 6.39296 6.41380 6.50661 6.59165 6.62539 6.85677 6.92423 7.06696 7.51216 7.65826 7.68332 8.32813 8.36696 9.48516 10.04968 10.40074 11.40092 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.002960 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.314081 B = 9455.612090 C = 9553.032249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.193 3.807 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.132 3.868 14 H 0.110 0.890 15 N -0.707 5.707 16 C 0.554 3.446 17 O -0.527 6.527 18 C -0.162 4.162 19 C -0.071 4.071 20 C -0.138 4.138 21 C -0.081 4.081 22 C -0.159 4.159 23 C 0.166 3.834 24 O -0.478 6.478 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.397 0.603 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.396 0.604 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 -20.456 4.561 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.027 3.973 14 H 0.128 0.872 15 N -0.358 5.358 16 C 0.341 3.659 17 O -0.405 6.405 18 C -0.166 4.166 19 C -0.090 4.090 20 C -0.156 4.156 21 C -0.100 4.100 22 C -0.177 4.177 23 C 0.120 3.880 24 O -0.289 6.289 25 C -0.122 4.122 26 C -0.155 4.155 27 C -0.167 4.167 28 C -0.164 4.164 29 H 0.065 0.935 30 H 0.222 0.778 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.760 -20.700 4.071 21.429 hybrid contribution -0.371 1.210 0.499 1.361 sum -4.131 -19.489 4.570 20.440 Atomic orbital electron populations 1.69660 1.05104 1.25632 1.57632 1.24737 0.95508 0.97711 1.02804 0.86129 0.78884 0.84099 0.77154 1.20507 1.21888 1.21890 1.19355 0.91167 0.84096 1.42700 0.90988 1.42349 1.05823 0.99490 1.86743 1.21109 0.94745 0.84318 0.91838 0.90010 1.24327 1.01764 0.95336 1.00209 1.22305 0.92515 0.87571 0.94903 0.87215 1.45927 1.10508 1.21984 1.57407 1.18062 0.88175 0.81039 0.78658 1.90788 1.16678 1.75041 1.57944 1.20558 0.94186 0.96606 1.05257 1.21311 0.91495 0.99059 0.97143 1.21123 1.00035 0.94857 0.99594 1.21219 0.95271 0.96690 0.96778 1.21466 0.93083 1.00881 1.02305 1.18517 0.84457 0.90899 0.94159 1.84739 1.18188 1.78064 1.47928 1.23611 0.97278 0.98072 0.93264 1.22429 0.94491 1.01027 0.97542 1.22725 0.96673 1.01582 0.95706 1.22710 0.98568 0.99253 0.95866 0.93528 0.77787 0.90245 0.92077 0.76724 0.85185 0.85083 0.85206 0.84825 0.74647 0.91303 0.90250 0.89087 0.92524 0.91432 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.75 5.33 -52.84 -0.28 -17.03 16 10 C 0.19 3.71 4.37 -67.33 -0.29 3.42 16 11 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 12 C -0.17 -3.07 7.71 -25.59 -0.20 -3.27 16 13 C 0.13 2.05 4.09 -67.48 -0.28 1.77 16 14 H 0.11 1.82 7.50 -51.93 -0.39 1.43 16 15 N -0.71 -9.70 5.22 -54.40 -0.28 -9.98 16 16 C 0.55 8.23 7.76 -12.47 -0.10 8.13 16 17 O -0.53 -9.50 14.78 -16.59 -0.25 -9.74 16 18 C -0.16 -1.98 5.89 -104.84 -0.62 -2.60 16 19 C -0.07 -0.68 9.54 -39.20 -0.37 -1.05 16 20 C -0.14 -1.07 10.02 -39.63 -0.40 -1.47 16 21 C -0.08 -0.60 10.03 -39.54 -0.40 -1.00 16 22 C -0.16 -1.39 9.98 -39.47 -0.39 -1.79 16 23 C 0.17 1.91 6.72 -38.69 -0.26 1.65 16 24 O -0.48 -5.80 11.58 -40.52 -0.47 -6.27 16 25 C -0.12 -1.89 1.06 -154.70 -0.16 -2.06 16 26 C -0.12 -1.75 6.78 -26.28 -0.18 -1.93 16 27 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 28 C -0.13 -1.86 7.84 -26.28 -0.21 -2.07 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.39 9.62 5.92 -40.82 -0.24 9.37 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.40 4.65 5.01 -40.82 -0.20 4.44 16 34 H 0.13 1.03 6.40 -52.49 -0.34 0.70 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.40 3.32 9.06 45.56 0.41 3.73 16 39 H 0.07 0.85 6.99 -51.93 -0.36 0.49 16 40 H 0.08 1.36 6.42 -51.93 -0.33 1.03 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.53 360.75 -9.68 -42.21 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -5.23 Total: 16.38 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -4.31 Total: -11.49 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.16 Total: -53.51 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.71 Total: -16.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.53 -9.68 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078561172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.988 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds