Wall clock time and date at job start Tue Mar 31 2020 11:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48498 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47392 * 299.99969 * 3 2 1 6 6 H 1.48506 * 109.46957 * 60.00240 * 3 2 1 7 7 C 1.38819 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99573 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99705 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88651 * 336.34156 * 10 9 7 12 12 C 1.54247 * 113.75389 * 107.77125 * 10 9 7 13 13 C 1.53952 * 87.19136 * 139.21239 * 12 10 9 14 14 H 1.09002 * 113.66200 * 89.79013 * 13 12 10 15 15 N 1.46505 * 113.66487 * 220.75611 * 13 12 10 16 16 C 1.34779 * 119.99522 * 253.98749 * 15 13 12 17 17 O 1.21589 * 119.99946 * 359.97438 * 16 15 13 18 18 C 1.47531 * 119.99641 * 179.97438 * 16 15 13 19 19 C 1.39710 * 120.19545 * 359.72099 * 18 16 15 20 20 C 1.37791 * 119.90738 * 179.74766 * 19 18 16 21 21 C 1.38538 * 120.30235 * 0.55422 * 20 19 18 22 22 C 1.38060 * 120.38918 * 359.69921 * 21 20 19 23 23 C 1.38710 * 120.08647 * 0.02562 * 22 21 20 24 24 O 1.35649 * 120.15018 * 180.02562 * 23 22 21 25 25 C 1.52907 * 113.66104 * 204.99815 * 10 9 7 26 26 C 1.52916 * 121.13615 * 346.25326 * 25 10 9 27 27 C 1.53950 * 86.78251 * 100.82129 * 26 25 10 28 28 C 1.52914 * 121.13836 * 94.81338 * 25 10 9 29 29 H 0.96999 * 120.00055 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00305 * 359.97438 * 9 7 2 31 31 H 1.09005 * 113.57594 * 24.66172 * 12 10 9 32 32 H 1.09001 * 113.67062 * 253.78328 * 12 10 9 33 33 H 0.96993 * 120.00241 * 73.98235 * 15 13 12 34 34 H 1.07999 * 120.04094 * 0.02562 * 19 18 16 35 35 H 1.08001 * 119.84341 * 180.27917 * 20 19 18 36 36 H 1.07994 * 119.80609 * 179.72287 * 21 20 19 37 37 H 1.08005 * 119.95604 * 180.02562 * 22 21 20 38 38 H 0.96705 * 113.99781 * 269.97663 * 24 23 22 39 39 H 1.08997 * 113.65977 * 215.29117 * 26 25 10 40 40 H 1.09000 * 113.66072 * 346.34954 * 26 25 10 41 41 H 1.09002 * 113.57610 * 270.13352 * 27 26 25 42 42 H 1.08995 * 113.65482 * 139.34771 * 27 26 25 43 43 H 1.08999 * 113.66109 * 13.65141 * 28 25 10 44 44 H 1.08997 * 113.65871 * 144.70914 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0669 -3.5638 -0.4038 12 6 1.9945 -4.4109 1.3424 13 6 1.8266 -5.7033 0.5228 14 1 2.7704 -6.1855 0.2681 15 7 0.8453 -6.6337 1.0864 16 6 1.2599 -7.7554 1.7081 17 8 2.4483 -7.9953 1.8007 18 6 0.2717 -8.6921 2.2761 19 6 -1.0946 -8.4176 2.1770 20 6 -2.0125 -9.2991 2.7051 21 6 -1.5868 -10.4520 3.3446 22 6 -0.2395 -10.7329 3.4542 23 6 0.6983 -9.8595 2.9234 24 8 2.0224 -10.1346 3.0299 25 6 1.2661 -4.8227 -0.5946 26 6 -0.2401 -4.7140 -0.8355 27 6 0.1026 -4.4598 -2.3147 28 6 1.4196 -5.2166 -2.0641 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 1.1204 -4.1588 1.9429 32 1 2.9242 -4.3724 1.9102 33 1 -0.1027 -6.4425 1.0122 34 1 -1.4308 -7.5178 1.6833 35 1 -3.0686 -9.0881 2.6239 36 1 -2.3131 -11.1351 3.7595 37 1 0.0846 -11.6339 3.9538 38 1 2.4351 -9.7782 3.8286 39 1 -0.7786 -5.6462 -0.6652 40 1 -0.7018 -3.8598 -0.3403 41 1 0.2442 -3.4060 -2.5545 42 1 -0.5653 -4.9660 -3.0115 43 1 2.2837 -4.7638 -2.5504 44 1 1.3475 -6.2900 -2.2390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078561172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:14 Heat of formation + Delta-G solvation = -13.242911 kcal Electronic energy + Delta-G solvation = -26353.571595 eV Core-core repulsion = 22657.963187 eV Total energy + Delta-G solvation = -3695.608408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01190 -41.03256 -39.27326 -37.64749 -36.27179 -35.70771 -34.16241 -32.37778 -31.38432 -30.72657 -26.82911 -26.55599 -25.59832 -25.03876 -23.79555 -23.06577 -21.81544 -21.45294 -19.76326 -19.54337 -18.81642 -18.27098 -17.56387 -16.77915 -16.66275 -16.41873 -16.24084 -16.10059 -15.79001 -15.70184 -15.12593 -14.90575 -14.70450 -14.20990 -13.83862 -13.52937 -13.28141 -13.19942 -13.13244 -13.09642 -12.90527 -12.75546 -12.63390 -12.30304 -12.25520 -12.02965 -11.86558 -11.71893 -11.36018 -11.21482 -11.00396 -10.76198 -10.69276 -10.11735 -9.86163 -9.63851 -8.95396 -7.94336 -5.21110 -0.20295 0.28321 1.47119 1.48051 1.57396 1.86808 2.13645 2.56957 2.74882 3.27986 3.36661 3.47368 3.59238 3.67184 3.77641 3.85107 3.93435 4.00217 4.11071 4.12515 4.25963 4.37643 4.43820 4.53920 4.62307 4.71434 4.76188 4.79331 4.83943 4.90562 5.00646 5.08038 5.12616 5.19127 5.24806 5.32248 5.34756 5.45116 5.49795 5.52274 5.62142 5.68733 5.81047 6.28410 6.55557 6.79636 7.21888 7.35970 8.11086 8.36561 9.28771 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.002960 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.314081 B = 9455.612090 C = 9553.032249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.176 3.824 11 H 0.075 0.925 12 C -0.168 4.168 13 C 0.150 3.850 14 H 0.103 0.897 15 N -0.698 5.698 16 C 0.552 3.448 17 O -0.568 6.568 18 C -0.191 4.191 19 C -0.074 4.074 20 C -0.135 4.135 21 C -0.069 4.069 22 C -0.161 4.161 23 C 0.145 3.855 24 O -0.499 6.499 25 C -0.111 4.111 26 C -0.110 4.110 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.251 0.749 30 H 0.379 0.621 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.405 0.595 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -22.601 4.755 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.210 4.210 13 C 0.044 3.956 14 H 0.120 0.880 15 N -0.350 5.350 16 C 0.341 3.659 17 O -0.448 6.448 18 C -0.194 4.194 19 C -0.093 4.093 20 C -0.153 4.153 21 C -0.087 4.087 22 C -0.179 4.179 23 C 0.099 3.901 24 O -0.312 6.312 25 C -0.114 4.114 26 C -0.148 4.148 27 C -0.166 4.166 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.214 0.786 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.169 0.831 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.306 -22.882 4.269 23.873 hybrid contribution 0.098 1.765 0.495 1.836 sum -5.207 -21.116 4.764 22.264 Atomic orbital electron populations 1.69795 1.06351 1.25876 1.59556 1.25444 0.96318 1.00662 1.03825 0.85167 0.78250 0.80345 0.76566 1.19389 1.22113 1.22231 1.19691 0.91433 0.85394 1.40848 0.90931 1.42425 1.05571 1.00213 1.87099 1.21342 0.94807 0.83825 0.93549 0.90665 1.24165 1.01112 0.96520 0.99250 1.21924 0.92778 0.87016 0.93891 0.87959 1.45761 1.10683 1.21424 1.57094 1.18550 0.88266 0.81188 0.77919 1.90759 1.18508 1.75971 1.59541 1.20465 0.94710 0.96872 1.07385 1.21524 0.90563 0.99984 0.97191 1.21521 1.01196 0.94265 0.98329 1.21681 0.95193 0.96753 0.95115 1.21703 0.93359 1.00902 1.01976 1.18854 0.84562 0.91613 0.95112 1.84693 1.19184 1.78336 1.48955 1.23381 0.97855 0.95835 0.94295 1.22465 0.93605 1.01707 0.96996 1.22631 0.97601 0.99883 0.96449 1.22713 0.98097 1.00462 0.94264 0.94052 0.78627 0.91108 0.92643 0.75379 0.83898 0.82095 0.81753 0.83072 0.73564 0.87778 0.92709 0.92518 0.89870 0.92046 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.24 -13.22 9.97 84.04 0.84 -12.39 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.71 -34.82 5.33 -321.08 -1.71 -36.53 16 10 C 0.18 6.90 4.37 45.38 0.20 7.10 16 11 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 12 C -0.17 -6.04 7.71 31.34 0.24 -5.80 16 13 C 0.15 4.59 4.09 45.28 0.19 4.78 16 14 H 0.10 3.38 7.50 -2.39 -0.02 3.36 16 15 N -0.70 -18.43 5.22 -444.30 -2.32 -20.75 16 16 C 0.55 16.20 7.76 86.69 0.67 16.87 16 17 O -0.57 -20.79 14.78 16.92 0.25 -20.54 16 18 C -0.19 -4.44 5.89 -20.01 -0.12 -4.56 16 19 C -0.07 -1.22 9.54 22.52 0.21 -1.01 16 20 C -0.14 -1.57 10.02 22.24 0.22 -1.35 16 21 C -0.07 -0.74 10.03 22.30 0.22 -0.52 16 22 C -0.16 -2.42 9.98 22.34 0.22 -2.20 16 23 C 0.14 3.20 6.72 22.85 0.15 3.35 16 24 O -0.50 -12.22 11.58 -68.72 -0.80 -13.02 16 25 C -0.11 -3.46 1.06 -52.31 -0.06 -3.51 16 26 C -0.11 -3.15 6.78 30.89 0.21 -2.94 16 27 C -0.13 -3.74 8.08 31.23 0.25 -3.49 16 28 C -0.12 -3.29 7.84 30.89 0.24 -3.05 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.38 19.47 5.92 -92.71 -0.55 18.92 16 31 H 0.07 2.66 8.14 -2.38 -0.02 2.65 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.41 8.78 5.01 -92.71 -0.46 8.32 16 34 H 0.14 1.86 6.40 -2.91 -0.02 1.84 16 35 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 36 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.40 7.13 9.06 -74.05 -0.67 6.46 16 39 H 0.10 2.24 6.99 -2.39 -0.02 2.22 16 40 H 0.05 1.88 6.42 -2.39 -0.02 1.86 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -72.31 360.75 1.27 -71.04 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.63 Total: 41.39 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.17 Total: -12.19 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.75 Total: -114.65 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.55 Total: -33.55 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -72.31 1.27 -71.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078561172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.797 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds