Wall clock time and date at job start Tue Mar 31 2020 11:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47001 * 274.98366 * 3 2 1 5 5 H 1.48493 * 109.46890 * 34.98359 * 3 2 1 6 6 H 1.48498 * 109.46861 * 154.98342 * 3 2 1 7 7 C 1.38815 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99993 * 186.74955 * 7 2 1 9 9 N 1.36944 * 120.00107 * 6.74173 * 7 2 1 10 10 C 1.47483 * 125.68527 * 173.76809 * 9 7 2 11 11 C 1.55398 * 104.78126 * 155.60449 * 10 9 7 12 12 H 1.08991 * 113.09531 * 157.54161 * 11 10 9 13 13 O 1.42782 * 107.09071 * 281.68937 * 11 10 9 14 14 C 1.42649 * 115.68761 * 166.04944 * 13 11 10 15 15 C 1.53536 * 108.39000 * 295.54283 * 14 13 11 16 16 N 1.47050 * 107.35571 * 55.59562 * 15 14 13 17 17 C 1.34776 * 120.12097 * 130.24480 * 16 15 14 18 18 O 1.21277 * 120.00579 * 180.02562 * 17 16 15 19 19 C 1.50709 * 119.99653 * 0.02562 * 17 16 15 20 20 C 1.50698 * 109.46848 * 180.02562 * 19 17 16 21 21 C 1.38238 * 119.99618 * 269.71739 * 20 19 17 22 22 C 1.38238 * 119.99479 * 179.76515 * 21 20 19 23 23 C 1.38228 * 120.00380 * 0.49414 * 22 21 20 24 24 C 1.38235 * 119.99816 * 359.78929 * 23 22 21 25 25 C 1.38232 * 120.00333 * 90.00238 * 20 19 17 26 26 C 1.45665 * 119.76351 * 310.22179 * 16 15 14 27 27 H 1.09001 * 109.95412 * 165.48173 * 26 16 15 28 28 C 1.48446 * 125.55816 * 354.55039 * 9 7 2 29 29 H 0.96993 * 119.99638 * 0.02562 * 1 2 3 30 30 H 1.08991 * 110.37646 * 36.77739 * 10 9 7 31 31 H 1.09000 * 110.37223 * 274.42364 * 10 9 7 32 32 H 1.09003 * 109.68043 * 55.26907 * 14 13 11 33 33 H 1.09008 * 109.68038 * 175.78005 * 14 13 11 34 34 H 1.08998 * 109.88514 * 175.06054 * 15 14 13 35 35 H 1.09000 * 109.88044 * 296.13503 * 15 14 13 36 36 H 1.08999 * 109.46498 * 299.99478 * 19 17 16 37 37 H 1.09000 * 109.47188 * 59.99607 * 19 17 16 38 38 H 1.07997 * 120.00344 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.99358 * 180.25496 * 22 21 20 40 40 H 1.07999 * 120.00571 * 179.76625 * 23 22 21 41 41 H 1.08004 * 120.00203 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99819 * 359.97438 * 25 20 19 43 43 H 1.09002 * 110.71591 * 62.21603 * 28 9 7 44 44 H 1.08993 * 109.81973 * 300.57786 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0846 -1.2055 0.1094 9 7 1.3327 -2.3840 -0.1403 10 6 1.9479 -3.7162 -0.2876 11 6 0.8651 -4.7108 0.2156 12 1 0.9961 -5.7195 -0.1759 13 8 0.8953 -4.6772 1.6427 14 6 -0.2191 -5.2790 2.2991 15 6 -1.4792 -4.4741 1.9504 16 7 -1.5802 -4.4307 0.4841 17 6 -2.7392 -4.7524 -0.1239 18 8 -2.8200 -4.7163 -1.3334 19 6 -3.9349 -5.1571 0.6994 20 6 -5.0933 -5.4639 -0.2143 21 6 -5.9759 -4.4618 -0.5718 22 6 -7.0357 -4.7423 -1.4139 23 6 -7.2188 -6.0269 -1.8903 24 6 -6.3396 -7.0302 -1.5282 25 6 -5.2767 -6.7487 -0.6904 26 6 -0.4232 -4.0382 -0.3091 27 1 -0.5820 -4.3024 -1.3546 28 6 -0.1437 -2.5326 -0.1848 29 1 -0.4849 0.8400 -0.0004 30 1 2.8454 -3.7898 0.3264 31 1 2.1853 -3.9110 -1.3334 32 1 -0.3345 -6.3078 1.9578 33 1 -0.0610 -5.2657 3.3776 34 1 -2.3591 -4.9634 2.3682 35 1 -1.3939 -3.4621 2.3462 36 1 -3.6898 -6.0432 1.2848 37 1 -4.2068 -4.3421 1.3703 38 1 -5.8351 -3.4590 -0.1966 39 1 -7.7229 -3.9584 -1.6964 40 1 -8.0490 -6.2468 -2.5452 41 1 -6.4828 -8.0341 -1.9000 42 1 -4.5896 -7.5325 -0.4077 43 1 -0.5586 -2.0049 -1.0436 44 1 -0.5818 -2.1476 0.7360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083123238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:18 Heat of formation + Delta-G solvation = -7.732526 kcal Electronic energy + Delta-G solvation = -26983.478558 eV Core-core repulsion = 23288.109098 eV Total energy + Delta-G solvation = -3695.369460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46838 -39.27248 -38.00125 -35.65323 -34.55920 -32.95063 -32.16130 -30.91156 -29.71922 -28.56571 -27.35415 -26.83462 -24.30806 -23.19410 -22.61164 -21.98054 -20.42582 -20.25669 -18.37068 -17.22695 -17.07296 -16.80814 -16.37557 -15.69273 -15.49396 -15.00323 -14.87787 -14.66492 -14.56092 -14.08719 -13.67843 -13.46218 -13.31332 -13.08823 -12.75531 -12.58178 -12.27327 -12.13719 -11.95267 -11.89559 -11.23946 -11.12858 -11.04277 -11.03833 -10.92106 -10.76973 -10.56209 -10.14184 -9.94203 -9.74825 -9.65046 -9.48713 -8.92196 -8.71883 -8.57889 -8.10117 -6.82584 -5.69689 -3.02290 1.30536 1.40073 2.84139 3.14124 3.42771 3.47785 3.49724 3.79121 4.05702 4.51996 4.58875 4.73946 4.77172 4.94333 4.96211 5.06386 5.09742 5.15831 5.23698 5.32188 5.37783 5.43862 5.48070 5.50024 5.60437 5.61461 5.77889 5.84136 5.93335 5.98313 6.01240 6.04759 6.37575 6.41486 6.47831 6.54530 6.56904 6.59586 6.74113 6.97385 7.44882 7.56648 7.64340 7.71444 7.82243 8.22465 8.42264 9.20055 9.82104 10.47319 11.42694 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.003650 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.122765 B = 7670.386646 C = 8680.977486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.143 3.857 11 C 0.067 3.933 12 H 0.071 0.929 13 O -0.360 6.360 14 C 0.051 3.949 15 C 0.070 3.930 16 N -0.595 5.595 17 C 0.514 3.486 18 O -0.532 6.532 19 C -0.102 4.102 20 C -0.061 4.061 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.107 4.107 26 C 0.084 3.916 27 H 0.100 0.900 28 C 0.183 3.817 29 H 0.252 0.748 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.050 0.950 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -15.153 3.704 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.016 3.984 11 C 0.007 3.993 12 H 0.089 0.911 13 O -0.278 6.278 14 C -0.027 4.027 15 C -0.053 4.053 16 N -0.329 5.329 17 C 0.302 3.698 18 O -0.408 6.408 19 C -0.142 4.142 20 C -0.062 4.062 21 C -0.122 4.122 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.020 4.020 27 H 0.118 0.882 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.068 0.932 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.178 -14.803 3.182 18.820 hybrid contribution 0.155 0.854 -0.065 0.870 sum -11.023 -13.949 3.116 18.050 Atomic orbital electron populations 1.69961 1.04928 1.24988 1.56972 1.24805 0.95682 0.97639 1.02272 0.86102 0.78653 0.83597 0.77461 1.21665 1.21856 1.20622 1.19063 0.91036 0.82295 1.42828 0.90244 1.44636 1.01027 1.00992 1.86037 1.21666 0.94244 0.85318 0.97137 1.23794 0.96816 0.97611 0.81048 0.91129 1.87908 1.41912 1.79571 1.18433 1.22834 0.86666 0.95032 0.98148 1.22536 0.99411 1.02734 0.80627 1.47634 1.11560 1.66944 1.06742 1.20445 0.83520 0.77303 0.88537 1.90711 1.83132 1.52728 1.14272 1.20726 0.91965 1.03715 0.97788 1.19313 0.94971 0.93827 0.98072 1.21043 0.94559 0.98694 0.97855 1.21104 0.98125 0.96755 0.97743 1.21111 0.99567 0.93354 1.00178 1.21065 0.95330 0.99206 0.98360 1.20951 0.97629 0.96088 0.97792 1.22686 0.83966 0.99546 0.95823 0.88247 1.21440 0.84617 0.86659 1.01489 0.93815 0.92638 0.94681 0.93486 0.88138 0.89352 0.89607 0.88205 0.87861 0.86060 0.86123 0.86336 0.86256 0.86398 0.93227 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 10.37 55.49 0.58 -26.89 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.32 10.27 -15.05 -0.15 -6.47 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.57 3.43 -168.98 -0.58 -16.15 16 10 C 0.14 3.01 6.80 -2.23 -0.02 2.99 16 11 C 0.07 1.22 4.13 -24.66 -0.10 1.12 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 O -0.36 -6.52 10.11 -35.23 -0.36 -6.88 16 14 C 0.05 0.67 7.02 37.44 0.26 0.93 16 15 C 0.07 0.94 6.29 -3.46 -0.02 0.92 16 16 N -0.60 -9.99 2.72 -164.67 -0.45 -10.44 16 17 C 0.51 8.49 7.67 -10.98 -0.08 8.41 16 18 O -0.53 -10.95 15.44 5.56 0.09 -10.86 16 19 C -0.10 -1.20 4.18 -29.03 -0.12 -1.32 16 20 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 21 C -0.10 -1.32 9.70 -39.58 -0.38 -1.70 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.11 -1.26 9.70 -39.59 -0.38 -1.64 16 26 C 0.08 1.69 3.03 -67.25 -0.20 1.48 16 27 H 0.10 2.11 7.06 -51.93 -0.37 1.74 16 28 C 0.18 4.58 5.09 -2.64 -0.01 4.57 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.09 0.81 5.96 -51.93 -0.31 0.50 16 35 H 0.09 1.33 7.61 -51.93 -0.40 0.94 16 36 H 0.10 0.88 7.54 -51.93 -0.39 0.49 16 37 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.05 1.42 7.46 -51.93 -0.39 1.03 16 44 H 0.05 1.42 6.68 -51.93 -0.35 1.08 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -34.82 354.21 -9.76 -44.58 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.38 Total: 1.41 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.97 Total: 2.52 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.45 Total: -53.48 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.27 Total: -17.74 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.82 -9.76 -44.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083123238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.852 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds