Wall clock time and date at job start Tue Mar 31 2020 11:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47001 * 274.98366 * 3 2 1 5 5 H 1.48493 * 109.46890 * 34.98359 * 3 2 1 6 6 H 1.48498 * 109.46861 * 154.98342 * 3 2 1 7 7 C 1.38815 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99993 * 186.74955 * 7 2 1 9 9 N 1.36944 * 120.00107 * 6.74173 * 7 2 1 10 10 C 1.47483 * 125.68527 * 173.76809 * 9 7 2 11 11 C 1.55398 * 104.78126 * 155.60449 * 10 9 7 12 12 H 1.08991 * 113.09531 * 157.54161 * 11 10 9 13 13 O 1.42782 * 107.09071 * 281.68937 * 11 10 9 14 14 C 1.42649 * 115.68761 * 166.04944 * 13 11 10 15 15 C 1.53536 * 108.39000 * 295.54283 * 14 13 11 16 16 N 1.47050 * 107.35571 * 55.59562 * 15 14 13 17 17 C 1.34776 * 120.12097 * 130.24480 * 16 15 14 18 18 O 1.21277 * 120.00579 * 180.02562 * 17 16 15 19 19 C 1.50709 * 119.99653 * 0.02562 * 17 16 15 20 20 C 1.50698 * 109.46848 * 180.02562 * 19 17 16 21 21 C 1.38238 * 119.99618 * 269.71739 * 20 19 17 22 22 C 1.38238 * 119.99479 * 179.76515 * 21 20 19 23 23 C 1.38228 * 120.00380 * 0.49414 * 22 21 20 24 24 C 1.38235 * 119.99816 * 359.78929 * 23 22 21 25 25 C 1.38232 * 120.00333 * 90.00238 * 20 19 17 26 26 C 1.45665 * 119.76351 * 310.22179 * 16 15 14 27 27 H 1.09001 * 109.95412 * 165.48173 * 26 16 15 28 28 C 1.48446 * 125.55816 * 354.55039 * 9 7 2 29 29 H 0.96993 * 119.99638 * 0.02562 * 1 2 3 30 30 H 1.08991 * 110.37646 * 36.77739 * 10 9 7 31 31 H 1.09000 * 110.37223 * 274.42364 * 10 9 7 32 32 H 1.09003 * 109.68043 * 55.26907 * 14 13 11 33 33 H 1.09008 * 109.68038 * 175.78005 * 14 13 11 34 34 H 1.08998 * 109.88514 * 175.06054 * 15 14 13 35 35 H 1.09000 * 109.88044 * 296.13503 * 15 14 13 36 36 H 1.08999 * 109.46498 * 299.99478 * 19 17 16 37 37 H 1.09000 * 109.47188 * 59.99607 * 19 17 16 38 38 H 1.07997 * 120.00344 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.99358 * 180.25496 * 22 21 20 40 40 H 1.07999 * 120.00571 * 179.76625 * 23 22 21 41 41 H 1.08004 * 120.00203 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99819 * 359.97438 * 25 20 19 43 43 H 1.09002 * 110.71591 * 62.21603 * 28 9 7 44 44 H 1.08993 * 109.81973 * 300.57786 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0846 -1.2055 0.1094 9 7 1.3327 -2.3840 -0.1403 10 6 1.9479 -3.7162 -0.2876 11 6 0.8651 -4.7108 0.2156 12 1 0.9961 -5.7195 -0.1759 13 8 0.8953 -4.6772 1.6427 14 6 -0.2191 -5.2790 2.2991 15 6 -1.4792 -4.4741 1.9504 16 7 -1.5802 -4.4307 0.4841 17 6 -2.7392 -4.7524 -0.1239 18 8 -2.8200 -4.7163 -1.3334 19 6 -3.9349 -5.1571 0.6994 20 6 -5.0933 -5.4639 -0.2143 21 6 -5.9759 -4.4618 -0.5718 22 6 -7.0357 -4.7423 -1.4139 23 6 -7.2188 -6.0269 -1.8903 24 6 -6.3396 -7.0302 -1.5282 25 6 -5.2767 -6.7487 -0.6904 26 6 -0.4232 -4.0382 -0.3091 27 1 -0.5820 -4.3024 -1.3546 28 6 -0.1437 -2.5326 -0.1848 29 1 -0.4849 0.8400 -0.0004 30 1 2.8454 -3.7898 0.3264 31 1 2.1853 -3.9110 -1.3334 32 1 -0.3345 -6.3078 1.9578 33 1 -0.0610 -5.2657 3.3776 34 1 -2.3591 -4.9634 2.3682 35 1 -1.3939 -3.4621 2.3462 36 1 -3.6898 -6.0432 1.2848 37 1 -4.2068 -4.3421 1.3703 38 1 -5.8351 -3.4590 -0.1966 39 1 -7.7229 -3.9584 -1.6964 40 1 -8.0490 -6.2468 -2.5452 41 1 -6.4828 -8.0341 -1.9000 42 1 -4.5896 -7.5325 -0.4077 43 1 -0.5586 -2.0049 -1.0436 44 1 -0.5818 -2.1476 0.7360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083123238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:18 Heat of formation + Delta-G solvation = -30.361577 kcal Electronic energy + Delta-G solvation = -26984.459827 eV Core-core repulsion = 23288.109098 eV Total energy + Delta-G solvation = -3696.350729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79503 -40.32887 -39.24903 -37.34656 -35.92349 -34.31717 -33.71182 -31.75000 -31.38432 -29.83252 -28.97619 -28.19346 -26.19315 -24.41560 -23.46050 -23.10995 -22.21659 -21.51430 -19.71757 -19.03646 -18.47973 -17.92424 -17.58436 -17.07630 -16.78158 -16.27857 -16.24185 -15.93735 -15.81461 -15.51131 -15.17714 -14.80751 -14.48832 -14.25456 -14.07762 -13.89486 -13.61604 -13.49239 -13.32455 -13.07015 -12.96877 -12.86128 -12.61923 -12.46182 -12.19894 -12.03414 -11.95552 -11.85606 -11.79604 -11.47070 -11.03502 -10.84004 -10.73258 -9.78198 -9.61901 -9.51204 -8.93904 -7.87293 -5.22563 0.42708 0.53939 1.44086 1.46915 1.55659 1.56938 1.88337 2.48560 2.79340 2.89752 3.32501 3.51618 3.60263 3.63881 3.76966 3.91716 3.94772 4.08527 4.13844 4.16028 4.23322 4.29243 4.35941 4.38713 4.39734 4.54123 4.65581 4.67536 4.77863 4.79050 4.88538 4.95052 4.99413 5.13432 5.17947 5.24061 5.43307 5.50682 5.58164 5.63849 5.68804 5.69822 6.11531 6.14480 6.36498 6.39773 7.02645 7.13545 7.71222 8.36968 9.23720 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.003650 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.122765 B = 7670.386646 C = 8680.977486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.087 0.913 9 N -0.621 5.621 10 C 0.134 3.866 11 C 0.087 3.913 12 H 0.109 0.891 13 O -0.388 6.388 14 C 0.047 3.953 15 C 0.068 3.932 16 N -0.598 5.598 17 C 0.510 3.490 18 O -0.581 6.581 19 C -0.091 4.091 20 C -0.081 4.081 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.117 4.117 26 C 0.095 3.905 27 H 0.083 0.917 28 C 0.202 3.798 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.135 0.865 43 H -0.005 1.005 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 -17.696 4.982 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.348 5.348 10 C 0.009 3.991 11 C 0.028 3.972 12 H 0.126 0.874 13 O -0.306 6.306 14 C -0.030 4.030 15 C -0.054 4.054 16 N -0.330 5.330 17 C 0.300 3.700 18 O -0.460 6.460 19 C -0.130 4.130 20 C -0.081 4.081 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.011 4.011 27 H 0.101 0.899 28 C 0.076 3.924 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.014 0.986 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.300 -17.387 4.496 21.218 hybrid contribution 0.163 1.618 -0.482 1.696 sum -11.137 -15.769 4.014 19.718 Atomic orbital electron populations 1.70207 1.06505 1.25129 1.58366 1.25686 0.96540 1.01143 1.02667 0.85032 0.77962 0.79053 0.77154 1.21674 1.22191 1.18831 1.19492 0.91647 0.83551 1.41899 0.89536 1.44926 1.01639 1.02410 1.85865 1.21907 0.95293 0.83907 0.98040 1.23621 0.93677 0.98144 0.81740 0.87371 1.87854 1.44231 1.80657 1.17901 1.23203 0.84569 0.95824 0.99415 1.22797 1.02239 1.02024 0.78346 1.47744 1.10763 1.66466 1.08054 1.21366 0.84207 0.76003 0.88413 1.90685 1.83853 1.54755 1.16709 1.20773 0.89146 1.05863 0.97252 1.19511 0.95333 0.94359 0.98946 1.21241 0.95668 0.98834 0.98931 1.21392 0.98184 0.97863 0.97615 1.21475 1.00230 0.92949 1.00053 1.21454 0.94854 1.00474 0.97805 1.21261 0.98268 0.96170 0.97838 1.22210 0.86744 0.96066 0.96062 0.89902 1.20988 0.84204 0.89894 0.97354 0.94620 0.92150 0.93561 0.90619 0.85250 0.84268 0.92487 0.84173 0.86254 0.86550 0.84730 0.83917 0.83781 0.84680 0.98634 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 10.37 21.65 0.22 -59.53 16 2 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 3 Si 0.98 47.14 29.56 68.60 2.03 49.17 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 8 H 0.09 4.74 7.84 -2.91 -0.02 4.71 16 9 N -0.62 -33.29 3.43 -688.53 -2.36 -35.65 16 10 C 0.13 5.61 6.80 87.02 0.59 6.20 16 11 C 0.09 3.07 4.13 31.94 0.13 3.20 16 12 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 13 O -0.39 -13.24 10.11 -148.98 -1.51 -14.75 16 14 C 0.05 1.06 7.02 72.16 0.51 1.56 16 15 C 0.07 1.66 6.29 86.45 0.54 2.21 16 16 N -0.60 -19.64 2.72 -793.27 -2.16 -21.79 16 17 C 0.51 16.50 7.67 87.66 0.67 17.17 16 18 O -0.58 -24.38 15.44 -3.02 -0.05 -24.42 16 19 C -0.09 -1.93 4.18 29.10 0.12 -1.81 16 20 C -0.08 -1.97 4.37 -19.87 -0.09 -2.05 16 21 C -0.13 -3.27 9.70 22.27 0.22 -3.06 16 22 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 24 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 25 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 26 C 0.10 3.87 3.03 45.88 0.14 4.01 16 27 H 0.08 3.64 7.06 -2.39 -0.02 3.62 16 28 C 0.20 10.66 5.09 86.22 0.44 11.10 16 29 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.14 1.95 5.96 -2.39 -0.01 1.94 16 35 H 0.06 1.76 7.61 -2.39 -0.02 1.74 16 36 H 0.14 1.81 7.54 -2.39 -0.02 1.79 16 37 H 0.12 2.15 7.94 -2.39 -0.02 2.13 16 38 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.00 -0.28 7.46 -2.39 -0.02 -0.30 16 44 H 0.02 1.11 6.68 -2.39 -0.02 1.10 16 Total: -1.00 -81.61 354.21 2.67 -78.94 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.99 Total: 15.52 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.49 Total: 12.51 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -4.29 Total: -116.97 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.55 Total: -39.17 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -81.61 2.67 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083123238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.581 kcal (2) G-P(sol) polarization free energy of solvation -81.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds