Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46490 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47250 * 299.99618 * 3 2 1 6 6 H 1.48496 * 109.47131 * 59.99912 * 3 2 1 7 7 C 1.38809 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99832 * 164.51577 * 7 2 1 9 9 N 1.36935 * 120.00300 * 344.51579 * 7 2 1 10 10 C 1.47012 * 121.37213 * 335.97210 * 9 7 2 11 11 C 1.50319 * 109.16252 * 222.96613 * 10 9 7 12 12 C 1.29445 * 123.65600 * 349.02634 * 11 10 9 13 13 C 1.50706 * 117.69979 * 180.85582 * 12 11 10 14 14 C 1.52995 * 109.47211 * 94.99594 * 13 12 11 15 15 N 1.46497 * 109.47355 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00153 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00084 * 359.97438 * 16 15 14 18 18 C 1.47541 * 120.00094 * 179.97438 * 16 15 14 19 19 C 1.39710 * 120.18827 * 359.97438 * 18 16 15 20 20 C 1.37795 * 119.90541 * 180.02562 * 19 18 16 21 21 C 1.38548 * 120.29776 * 0.02562 * 20 19 18 22 22 C 1.38052 * 120.39064 * 0.02562 * 21 20 19 23 23 C 1.38706 * 120.08787 * 359.97438 * 22 21 20 24 24 O 1.35654 * 120.14794 * 179.97438 * 23 22 21 25 25 C 1.49970 * 124.61069 * 1.13646 * 12 11 10 26 26 C 1.47338 * 121.37856 * 155.99541 * 9 7 2 27 27 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.51885 * 103.06408 * 10 9 7 29 29 H 1.08999 * 109.51984 * 342.87440 * 10 9 7 30 30 H 1.08005 * 118.17119 * 168.99958 * 11 10 9 31 31 H 1.09004 * 109.46363 * 334.99867 * 13 12 11 32 32 H 1.08996 * 109.47549 * 215.00191 * 13 12 11 33 33 H 1.09008 * 109.47091 * 60.00320 * 14 13 12 34 34 H 1.09004 * 109.47252 * 300.00433 * 14 13 12 35 35 H 0.96998 * 119.99828 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.04571 * 0.02562 * 19 18 16 37 37 H 1.07993 * 119.84766 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.79687 * 179.71718 * 21 20 19 39 39 H 1.08001 * 119.95493 * 180.02562 * 22 21 20 40 40 H 0.96697 * 114.00258 * 270.00201 * 24 23 22 41 41 H 1.09006 * 109.31763 * 101.01094 * 25 12 11 42 42 H 1.08999 * 109.31474 * 220.43763 * 25 12 11 43 43 H 1.09004 * 109.77842 * 237.78741 * 26 9 7 44 44 H 1.09002 * 109.77465 * 358.59187 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2492 9 7 1.3629 -2.3664 0.3176 10 6 0.1445 -2.3650 1.1402 11 6 0.2248 -3.4821 2.1429 12 6 1.1204 -4.4159 2.1063 13 6 1.0641 -5.4826 3.1694 14 6 0.2873 -6.6897 2.6399 15 7 0.2320 -7.7265 3.6735 16 6 -0.4059 -8.8882 3.4292 17 8 -0.9360 -9.0758 2.3512 18 6 -0.4611 -9.9326 4.4700 19 6 0.1470 -9.7215 5.7099 20 6 0.0923 -10.7011 6.6776 21 6 -0.5630 -11.8957 6.4266 22 6 -1.1672 -12.1176 5.2053 23 6 -1.1220 -11.1427 4.2197 24 8 -1.7149 -11.3597 3.0190 25 6 2.2140 -4.5078 1.0841 26 6 1.8591 -3.6722 -0.1510 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7265 -2.5110 0.5012 29 1 0.0587 -1.4122 1.6624 30 1 -0.5053 -3.5066 2.9384 31 1 0.5638 -5.0880 4.0537 32 1 2.0769 -5.7887 3.4311 33 1 0.7876 -7.0843 1.7555 34 1 -0.7256 -6.3837 2.3782 35 1 0.6552 -7.5770 4.5334 36 1 0.6592 -8.7919 5.9098 37 1 0.5623 -10.5368 7.6358 38 1 -0.5969 -12.6597 7.1892 39 1 -1.6764 -13.0513 5.0173 40 1 -1.1351 -11.7693 2.3624 41 1 3.1443 -4.1405 1.5173 42 1 2.3439 -5.5487 0.7877 43 1 1.0847 -4.1745 -0.7308 44 1 2.7476 -3.5299 -0.7661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159314901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = -15.650872 kcal Electronic energy + Delta-G solvation = -25160.703635 eV Core-core repulsion = 21464.990810 eV Total energy + Delta-G solvation = -3695.712825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68196 -38.86867 -37.82046 -37.01386 -35.36273 -33.60845 -31.97967 -31.11881 -30.19432 -29.78968 -28.56584 -25.53242 -24.15008 -23.16253 -22.74035 -22.28148 -20.98728 -20.62460 -18.83734 -17.83246 -17.57582 -16.55271 -16.02318 -15.84867 -15.54496 -15.25333 -15.19284 -14.92396 -14.51093 -14.02821 -13.93749 -13.71276 -13.50539 -13.29549 -12.76524 -12.64597 -12.53366 -12.22053 -12.10292 -11.96917 -11.56401 -11.40115 -11.04854 -10.99686 -10.89942 -10.72917 -10.28044 -10.25301 -9.91517 -9.79240 -9.52024 -9.51153 -9.18453 -9.01916 -8.64261 -7.90721 -6.70655 -5.76883 -3.15638 0.41735 0.80746 2.63769 2.81301 3.14452 3.38535 3.39833 3.45930 3.48221 3.86188 4.34625 4.37792 4.51145 4.54351 4.86540 4.91383 5.11757 5.15938 5.28450 5.30868 5.39300 5.41588 5.57725 5.66186 5.74030 5.80073 5.86734 5.93594 6.02328 6.07058 6.16683 6.22763 6.26747 6.35764 6.41249 6.57555 6.80782 6.92794 7.25595 7.32722 7.37281 7.40115 7.43644 7.77252 7.90381 8.10468 8.41097 9.22539 9.85477 10.44226 11.33490 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.035554 B = 0.002099 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.341613 B =13334.523290 C =13600.027586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.092 4.092 14 C 0.125 3.875 15 N -0.727 5.727 16 C 0.553 3.447 17 O -0.520 6.520 18 C -0.164 4.164 19 C -0.072 4.072 20 C -0.139 4.139 21 C -0.080 4.080 22 C -0.158 4.158 23 C 0.168 3.832 24 O -0.478 6.478 25 C -0.091 4.091 26 C 0.143 3.857 27 H 0.253 0.747 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.396 0.604 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -23.918 14.673 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.002 3.998 15 N -0.379 5.379 16 C 0.340 3.660 17 O -0.397 6.397 18 C -0.168 4.168 19 C -0.090 4.090 20 C -0.157 4.157 21 C -0.098 4.098 22 C -0.176 4.176 23 C 0.122 3.878 24 O -0.289 6.289 25 C -0.130 4.130 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.231 0.769 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.254 0.746 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.275 -23.618 14.098 27.507 hybrid contribution 0.923 0.771 0.379 1.261 sum 1.198 -22.846 14.477 27.073 Atomic orbital electron populations 1.70030 1.05160 1.25330 1.54940 1.25000 0.95400 0.98288 1.01399 0.86185 0.79218 0.83940 0.77234 1.20335 1.21768 1.21634 1.19225 0.92212 0.84386 1.41500 0.91361 1.44149 1.29276 1.01164 1.57339 1.19708 0.88645 0.94757 0.89762 1.23125 0.96650 0.97368 0.99405 1.20215 0.99359 0.96564 0.98228 1.20912 0.99938 0.94162 0.97927 1.21457 1.01353 0.86579 0.90370 1.46032 1.56794 1.16588 1.18517 1.18058 0.78892 0.81913 0.87186 1.90829 1.44679 1.79398 1.24780 1.20508 1.03595 0.96633 0.96073 1.21282 0.96674 0.99221 0.91873 1.21124 1.00988 0.93852 0.99725 1.21243 0.95162 0.97147 0.96248 1.21489 1.02210 0.99666 0.94271 1.18529 0.90687 0.91205 0.87428 1.84755 1.39652 1.83819 1.20652 1.20790 0.96531 0.98992 0.96669 1.20993 0.97322 0.87226 0.92840 0.93690 0.94394 0.89151 0.89069 0.91544 0.91477 0.91148 0.91148 0.76862 0.85180 0.85068 0.85117 0.84698 0.74558 0.91929 0.92929 0.95777 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.59 11.08 55.49 0.61 -25.98 16 2 C 0.00 -0.09 5.01 -17.43 -0.09 -0.18 16 3 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.77 9.71 -15.06 -0.15 -6.91 16 8 H 0.07 1.85 7.88 -52.48 -0.41 1.44 16 9 N -0.60 -15.24 3.01 -173.56 -0.52 -15.76 16 10 C 0.20 4.78 5.23 -5.10 -0.03 4.76 16 11 C -0.15 -2.85 9.47 -35.78 -0.34 -3.19 16 12 C -0.14 -2.47 5.11 -100.98 -0.52 -2.99 16 13 C -0.09 -1.19 5.32 -27.88 -0.15 -1.33 16 14 C 0.13 1.65 5.66 -4.05 -0.02 1.63 16 15 N -0.73 -8.07 5.51 -61.35 -0.34 -8.41 16 16 C 0.55 7.24 7.76 -12.47 -0.10 7.14 16 17 O -0.52 -8.79 15.16 -16.59 -0.25 -9.04 16 18 C -0.16 -1.71 5.89 -104.84 -0.62 -2.33 16 19 C -0.07 -0.53 9.54 -39.19 -0.37 -0.90 16 20 C -0.14 -0.83 10.02 -39.63 -0.40 -1.23 16 21 C -0.08 -0.47 10.03 -39.54 -0.40 -0.87 16 22 C -0.16 -1.18 9.98 -39.48 -0.39 -1.57 16 23 C 0.17 1.70 6.72 -38.70 -0.26 1.44 16 24 O -0.48 -5.29 11.58 -40.54 -0.47 -5.76 16 25 C -0.09 -1.61 5.95 -28.09 -0.17 -1.78 16 26 C 0.14 3.05 6.59 -3.44 -0.02 3.02 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 30 H 0.09 1.58 7.73 -52.48 -0.41 1.18 16 31 H 0.07 0.80 7.78 -51.93 -0.40 0.40 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.07 1.00 8.11 -51.92 -0.42 0.58 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 3.17 6.50 -40.82 -0.27 2.90 16 36 H 0.13 0.67 6.40 -52.49 -0.34 0.33 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.40 2.84 9.06 45.56 0.41 3.25 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -34.47 364.31 -10.03 -44.50 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.52 Total: 3.39 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -4.01 Total: -5.28 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.24 Total: -50.14 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.72 Total: -14.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.47 -10.03 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159314901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.846 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds