Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46490 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47250 * 299.99618 * 3 2 1 6 6 H 1.48496 * 109.47131 * 59.99912 * 3 2 1 7 7 C 1.38809 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99832 * 164.51577 * 7 2 1 9 9 N 1.36935 * 120.00300 * 344.51579 * 7 2 1 10 10 C 1.47012 * 121.37213 * 335.97210 * 9 7 2 11 11 C 1.50319 * 109.16252 * 222.96613 * 10 9 7 12 12 C 1.29445 * 123.65600 * 349.02634 * 11 10 9 13 13 C 1.50706 * 117.69979 * 180.85582 * 12 11 10 14 14 C 1.52995 * 109.47211 * 94.99594 * 13 12 11 15 15 N 1.46497 * 109.47355 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00153 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00084 * 359.97438 * 16 15 14 18 18 C 1.47541 * 120.00094 * 179.97438 * 16 15 14 19 19 C 1.39710 * 120.18827 * 359.97438 * 18 16 15 20 20 C 1.37795 * 119.90541 * 180.02562 * 19 18 16 21 21 C 1.38548 * 120.29776 * 0.02562 * 20 19 18 22 22 C 1.38052 * 120.39064 * 0.02562 * 21 20 19 23 23 C 1.38706 * 120.08787 * 359.97438 * 22 21 20 24 24 O 1.35654 * 120.14794 * 179.97438 * 23 22 21 25 25 C 1.49970 * 124.61069 * 1.13646 * 12 11 10 26 26 C 1.47338 * 121.37856 * 155.99541 * 9 7 2 27 27 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.51885 * 103.06408 * 10 9 7 29 29 H 1.08999 * 109.51984 * 342.87440 * 10 9 7 30 30 H 1.08005 * 118.17119 * 168.99958 * 11 10 9 31 31 H 1.09004 * 109.46363 * 334.99867 * 13 12 11 32 32 H 1.08996 * 109.47549 * 215.00191 * 13 12 11 33 33 H 1.09008 * 109.47091 * 60.00320 * 14 13 12 34 34 H 1.09004 * 109.47252 * 300.00433 * 14 13 12 35 35 H 0.96998 * 119.99828 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.04571 * 0.02562 * 19 18 16 37 37 H 1.07993 * 119.84766 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.79687 * 179.71718 * 21 20 19 39 39 H 1.08001 * 119.95493 * 180.02562 * 22 21 20 40 40 H 0.96697 * 114.00258 * 270.00201 * 24 23 22 41 41 H 1.09006 * 109.31763 * 101.01094 * 25 12 11 42 42 H 1.08999 * 109.31474 * 220.43763 * 25 12 11 43 43 H 1.09004 * 109.77842 * 237.78741 * 26 9 7 44 44 H 1.09002 * 109.77465 * 358.59187 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2492 9 7 1.3629 -2.3664 0.3176 10 6 0.1445 -2.3650 1.1402 11 6 0.2248 -3.4821 2.1429 12 6 1.1204 -4.4159 2.1063 13 6 1.0641 -5.4826 3.1694 14 6 0.2873 -6.6897 2.6399 15 7 0.2320 -7.7265 3.6735 16 6 -0.4059 -8.8882 3.4292 17 8 -0.9360 -9.0758 2.3512 18 6 -0.4611 -9.9326 4.4700 19 6 0.1470 -9.7215 5.7099 20 6 0.0923 -10.7011 6.6776 21 6 -0.5630 -11.8957 6.4266 22 6 -1.1672 -12.1176 5.2053 23 6 -1.1220 -11.1427 4.2197 24 8 -1.7149 -11.3597 3.0190 25 6 2.2140 -4.5078 1.0841 26 6 1.8591 -3.6722 -0.1510 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7265 -2.5110 0.5012 29 1 0.0587 -1.4122 1.6624 30 1 -0.5053 -3.5066 2.9384 31 1 0.5638 -5.0880 4.0537 32 1 2.0769 -5.7887 3.4311 33 1 0.7876 -7.0843 1.7555 34 1 -0.7256 -6.3837 2.3782 35 1 0.6552 -7.5770 4.5334 36 1 0.6592 -8.7919 5.9098 37 1 0.5623 -10.5368 7.6358 38 1 -0.5969 -12.6597 7.1892 39 1 -1.6764 -13.0513 5.0173 40 1 -1.1351 -11.7693 2.3624 41 1 3.1443 -4.1405 1.5173 42 1 2.3439 -5.5487 0.7877 43 1 1.0847 -4.1745 -0.7308 44 1 2.7476 -3.5299 -0.7661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159314901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = -38.409621 kcal Electronic energy + Delta-G solvation = -25161.690528 eV Core-core repulsion = 21464.990810 eV Total energy + Delta-G solvation = -3696.699719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45287 -39.82190 -39.28973 -37.67924 -36.68868 -35.13232 -33.32164 -32.30202 -31.45954 -30.77562 -29.97496 -27.19307 -25.20196 -24.48463 -23.92951 -23.26643 -22.46628 -21.59439 -19.56755 -19.44719 -18.56392 -17.67672 -17.20925 -17.01100 -16.72338 -16.36525 -16.15316 -15.93351 -15.64803 -15.47311 -15.22973 -15.07192 -14.84949 -14.41427 -14.28928 -13.87985 -13.40014 -13.29897 -13.18602 -13.14035 -12.84740 -12.81039 -12.64315 -12.60334 -12.36577 -12.13244 -11.90252 -11.74878 -11.67401 -11.23984 -10.83432 -10.70073 -10.26004 -9.96421 -9.65447 -9.49746 -8.76208 -7.88642 -5.31109 -0.21156 0.28305 1.40436 1.46038 1.46830 1.58129 1.85315 2.15481 2.50438 2.75017 3.27156 3.27993 3.63282 3.69443 3.84611 3.95546 4.08245 4.12338 4.12509 4.28390 4.38773 4.43960 4.54861 4.57379 4.66900 4.75350 4.85940 4.90140 4.90698 4.96584 5.06884 5.16672 5.22892 5.24154 5.34538 5.37597 5.41274 5.45159 5.49549 5.60422 5.81080 5.87228 6.27552 6.32987 6.51421 6.79104 7.12259 7.19891 7.82305 8.37448 9.20168 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.035554 B = 0.002099 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.341613 B =13334.523290 C =13600.027586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.207 3.793 11 C -0.175 4.175 12 C -0.120 4.120 13 C -0.078 4.078 14 C 0.134 3.866 15 N -0.712 5.712 16 C 0.548 3.452 17 O -0.571 6.571 18 C -0.192 4.192 19 C -0.069 4.069 20 C -0.135 4.135 21 C -0.070 4.070 22 C -0.164 4.164 23 C 0.142 3.858 24 O -0.502 6.502 25 C -0.087 4.087 26 C 0.135 3.865 27 H 0.249 0.751 28 H 0.001 0.999 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.405 0.595 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -25.781 17.839 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.195 4.195 12 C -0.120 4.120 13 C -0.115 4.115 14 C 0.010 3.990 15 N -0.365 5.365 16 C 0.337 3.663 17 O -0.451 6.451 18 C -0.195 4.195 19 C -0.088 4.088 20 C -0.153 4.153 21 C -0.088 4.088 22 C -0.182 4.182 23 C 0.096 3.904 24 O -0.315 6.315 25 C -0.125 4.125 26 C 0.009 3.991 27 H 0.058 0.942 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.253 0.747 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.166 0.834 40 H 0.265 0.735 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.503 -25.506 17.302 30.922 hybrid contribution 0.279 1.218 -0.606 1.388 sum 2.783 -24.288 16.696 29.605 Atomic orbital electron populations 1.70211 1.06698 1.25725 1.56315 1.25832 0.96214 1.01618 1.01711 0.85124 0.78567 0.79551 0.76727 1.18864 1.22019 1.21651 1.19584 0.92587 0.85543 1.40853 0.90992 1.44448 1.29427 1.02132 1.57964 1.19347 0.87259 0.95274 0.89971 1.22826 0.99453 0.97252 0.99929 1.20575 0.97150 0.96161 0.98155 1.20808 1.01828 0.92236 0.96674 1.21179 0.99905 0.87140 0.90789 1.45807 1.56352 1.15539 1.18817 1.18570 0.77960 0.82595 0.87163 1.90796 1.46926 1.80436 1.26960 1.20445 1.06135 0.96176 0.96783 1.21572 0.95835 1.00614 0.90763 1.21551 1.00145 0.93125 1.00487 1.21694 0.93297 0.97874 0.95962 1.21694 1.02527 0.99627 0.94365 1.18903 0.91690 0.92176 0.87634 1.84709 1.40831 1.84203 1.21734 1.20748 0.96805 1.00023 0.94942 1.21198 0.97039 0.86049 0.94795 0.94162 0.98144 0.92642 0.86982 0.89759 0.88557 0.92134 0.93557 0.74724 0.82895 0.81831 0.81912 0.83408 0.73533 0.91076 0.89628 0.96547 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 11.08 21.65 0.24 -57.23 16 2 C -0.06 -3.40 5.01 84.86 0.43 -2.98 16 3 Si 0.97 45.77 29.58 68.60 2.03 47.79 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.26 -14.45 9.71 84.03 0.82 -13.63 16 8 H 0.07 3.92 7.88 -2.91 -0.02 3.89 16 9 N -0.62 -32.27 3.01 -703.01 -2.11 -34.38 16 10 C 0.21 10.57 5.23 85.42 0.45 11.01 16 11 C -0.18 -6.87 9.47 27.11 0.26 -6.61 16 12 C -0.12 -3.91 5.11 -15.13 -0.08 -3.99 16 13 C -0.08 -1.75 5.32 29.85 0.16 -1.59 16 14 C 0.13 3.30 5.66 86.38 0.49 3.79 16 15 N -0.71 -14.41 5.51 -466.27 -2.57 -16.98 16 16 C 0.55 14.15 7.76 86.70 0.67 14.82 16 17 O -0.57 -19.96 15.16 16.93 0.26 -19.70 16 18 C -0.19 -3.79 5.89 -20.01 -0.12 -3.91 16 19 C -0.07 -0.81 9.54 22.52 0.21 -0.59 16 20 C -0.14 -1.04 10.02 22.24 0.22 -0.82 16 21 C -0.07 -0.57 10.03 22.30 0.22 -0.34 16 22 C -0.16 -2.14 9.98 22.34 0.22 -1.92 16 23 C 0.14 2.83 6.72 22.84 0.15 2.98 16 24 O -0.50 -11.67 11.58 -68.78 -0.80 -12.47 16 25 C -0.09 -2.88 5.95 29.71 0.18 -2.70 16 26 C 0.13 5.74 6.59 86.31 0.57 6.31 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.06 3.16 6.41 -2.39 -0.02 3.15 16 30 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 31 H 0.08 1.69 7.78 -2.38 -0.02 1.67 16 32 H 0.10 1.71 8.11 -2.39 -0.02 1.69 16 33 H 0.06 1.63 8.11 -2.38 -0.02 1.61 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.41 5.20 6.50 -92.71 -0.60 4.59 16 36 H 0.15 0.93 6.40 -2.91 -0.02 0.91 16 37 H 0.16 0.23 8.06 -2.91 -0.02 0.20 16 38 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.41 6.48 9.06 -74.06 -0.67 5.81 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 Total: -1.00 -79.68 364.31 1.66 -78.03 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.25 Total: 15.10 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.85 Total: -0.16 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.44 Total: -108.59 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.54 Total: -32.17 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.68 1.66 -78.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159314901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.617 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds