Wall clock time and date at job start Tue Mar 31 2020 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48497 * 109.46821 * 269.99838 * 3 2 1 5 5 H 1.48496 * 109.47182 * 29.99864 * 3 2 1 6 6 H 1.48500 * 109.46784 * 149.99829 * 3 2 1 7 7 C 1.37873 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00692 * 0.02562 * 7 2 1 9 9 S 1.76210 * 119.99761 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40048 * 66.45892 * 9 7 2 11 11 O 1.42105 * 106.39893 * 293.54172 * 9 7 2 12 12 N 1.65595 * 107.21720 * 180.02562 * 9 7 2 13 13 C 1.46494 * 120.00081 * 65.00412 * 12 9 7 14 14 C 1.53099 * 109.52641 * 264.67237 * 13 12 9 15 15 C 1.53034 * 109.29509 * 182.43578 * 14 13 12 16 16 N 1.46847 * 109.51345 * 59.18740 * 15 14 13 17 17 C 1.46898 * 110.99897 * 174.16738 * 16 15 14 18 18 C 1.52997 * 109.47395 * 294.99793 * 17 16 15 19 19 C 1.52995 * 109.47350 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47019 * 59.99915 * 19 18 17 21 21 C 1.52997 * 109.47447 * 300.00010 * 20 19 18 22 22 C 1.53003 * 109.46913 * 59.99802 * 21 20 19 23 23 C 1.46854 * 111.19790 * 298.26320 * 16 15 14 24 24 C 1.53039 * 109.52227 * 61.74204 * 23 16 15 25 25 H 0.96996 * 119.99558 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99624 * 244.99731 * 12 9 7 27 27 H 1.09002 * 109.52440 * 24.86856 * 13 12 9 28 28 H 1.09007 * 109.48839 * 62.49221 * 14 13 12 29 29 H 1.09009 * 109.50682 * 302.39007 * 14 13 12 30 30 H 1.09002 * 109.46271 * 299.17460 * 15 14 13 31 31 H 1.08994 * 109.46242 * 179.19760 * 15 14 13 32 32 H 1.09002 * 109.47182 * 54.99953 * 17 16 15 33 33 H 1.09004 * 109.46567 * 300.00205 * 18 17 16 34 34 H 1.09006 * 109.47022 * 59.99862 * 18 17 16 35 35 H 1.09002 * 109.47143 * 300.00107 * 19 18 17 36 36 H 1.08998 * 109.47122 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47050 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47006 * 60.00108 * 20 19 18 39 39 H 1.09003 * 109.46590 * 300.00613 * 21 20 19 40 40 H 1.08992 * 109.47107 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47015 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47098 * 60.00281 * 22 21 20 43 43 H 1.08993 * 109.46229 * 181.76227 * 23 16 15 44 44 H 1.09008 * 109.45803 * 301.73838 * 23 16 15 45 45 H 1.08994 * 109.50227 * 60.75933 * 24 23 16 46 46 H 1.09000 * 109.50337 * 180.88158 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1942 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1683 -0.6500 -1.2485 12 7 4.2566 -2.7759 0.0011 13 6 3.9618 -3.6340 -1.1491 14 6 2.6761 -4.4217 -0.8836 15 6 2.4060 -5.3606 -2.0615 16 7 3.5392 -6.2800 -2.2258 17 6 3.2557 -7.2857 -3.2583 18 6 2.0993 -8.1761 -2.7993 19 6 1.8045 -9.2239 -3.8744 20 6 3.0495 -10.0830 -4.1042 21 6 4.2060 -9.1927 -4.5633 22 6 4.5007 -8.1448 -3.4881 23 6 4.7764 -5.5491 -2.5286 24 6 5.1170 -4.6158 -1.3646 25 1 -0.4849 0.8400 -0.0004 26 1 4.7390 -3.1342 0.7625 27 1 3.8357 -3.0186 -2.0399 28 1 1.8419 -3.7291 -0.7715 29 1 2.7894 -5.0064 0.0294 30 1 2.2790 -4.7743 -2.9716 31 1 1.4988 -5.9332 -1.8689 32 1 2.9825 -6.7855 -4.1874 33 1 2.3727 -8.6763 -1.8701 34 1 1.2124 -7.5639 -2.6351 35 1 1.5314 -8.7240 -4.8037 36 1 0.9809 -9.8585 -3.5471 37 1 2.8393 -10.8298 -4.8699 38 1 3.3226 -10.5829 -3.1749 39 1 3.9327 -8.6928 -5.4926 40 1 5.0927 -9.8048 -4.7274 41 1 5.3243 -7.5103 -3.8154 42 1 4.7738 -8.6446 -2.5589 43 1 5.5906 -6.2586 -2.6755 44 1 4.6382 -4.9618 -3.4365 45 1 5.2687 -5.2035 -0.4593 46 1 6.0267 -4.0619 -1.5964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:53 Heat of formation + Delta-G solvation = -99.562817 kcal Electronic energy + Delta-G solvation = -25772.708044 eV Core-core repulsion = 22208.800475 eV Total energy + Delta-G solvation = -3563.907569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.84084 -37.68148 -35.58912 -34.66784 -34.39262 -33.02563 -31.51228 -31.02804 -30.24572 -28.10837 -26.38145 -23.78408 -23.51457 -21.76145 -21.41510 -19.84926 -19.75346 -18.97889 -17.46012 -16.76447 -16.56152 -15.60813 -15.01115 -14.95159 -14.78003 -14.66366 -14.22048 -13.98683 -13.63834 -13.48520 -13.31620 -13.13217 -13.03470 -12.85141 -12.64183 -12.25364 -11.74746 -11.68454 -11.50072 -11.37144 -11.26024 -11.03094 -11.00505 -10.87336 -10.72868 -10.66001 -10.57595 -10.46356 -10.35960 -10.23958 -9.97238 -9.69889 -9.19399 -9.08274 -8.55125 -8.23713 -6.78656 -5.32004 2.12663 3.08570 3.18979 3.28707 3.82539 3.97020 4.33362 4.49740 4.54808 4.61802 4.75864 4.97610 5.00336 5.08248 5.11544 5.21371 5.28135 5.30207 5.34051 5.39739 5.43608 5.48232 5.57898 5.59341 5.70952 5.77641 5.77811 5.81413 5.91949 5.94478 5.97429 6.01039 6.05734 6.10865 6.17392 6.24156 6.28093 6.32643 6.35902 6.65148 6.83500 7.18467 7.20129 7.49783 7.80986 8.24805 8.72992 10.33169 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.003297 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.611569 B = 8491.299029 C = 9107.106142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.221 1.221 7 C -1.015 5.015 8 H 0.126 0.874 9 S 2.674 3.326 10 O -1.011 7.011 11 O -1.014 7.014 12 N -1.119 6.119 13 C 0.158 3.842 14 C -0.140 4.140 15 C 0.056 3.944 16 N -0.535 5.535 17 C 0.086 3.914 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.053 3.947 24 C -0.119 4.119 25 H 0.280 0.720 26 H 0.405 0.595 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -18.320 -7.630 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.065 4.065 3 Si 0.621 3.379 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.143 1.143 7 C -1.150 5.150 8 H 0.144 0.856 9 S 2.775 3.225 10 O -1.001 7.001 11 O -1.004 7.004 12 N -0.873 5.873 13 C 0.050 3.950 14 C -0.180 4.180 15 C -0.072 4.072 16 N -0.260 5.260 17 C -0.022 4.022 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.075 4.075 24 C -0.159 4.159 25 H 0.090 0.910 26 H 0.236 0.764 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.262 -17.635 -7.340 20.102 hybrid contribution -0.482 0.751 -0.417 0.985 sum 5.780 -16.884 -7.757 19.459 Atomic orbital electron populations 1.69990 1.06550 1.28965 1.39791 1.24417 0.94762 0.98744 0.88617 0.87871 0.83612 0.84653 0.81739 1.17114 1.18008 1.14262 1.30576 1.15621 1.02195 1.66563 0.85637 1.01366 0.77387 0.70511 0.73203 1.93471 1.85544 1.76043 1.45050 1.93401 1.85066 1.76225 1.45678 1.55521 1.73830 1.31180 1.26764 1.20651 0.93981 0.91552 0.88820 1.22272 0.99158 0.98232 0.98289 1.22130 0.93444 0.93653 0.98005 1.62011 1.03392 1.15344 1.45230 1.21598 0.95529 0.92419 0.92691 1.21599 0.97687 0.96866 0.98851 1.21529 0.97534 0.97474 0.99132 1.21543 0.95258 0.97725 1.01175 1.21525 0.98270 0.97328 0.98492 1.21706 0.97105 0.97186 0.99418 1.22152 0.92742 0.95819 0.96808 1.21884 0.98178 0.96706 0.99123 0.90978 0.76384 0.89422 0.89194 0.90834 0.94619 0.90341 0.94339 0.91093 0.91717 0.92187 0.91926 0.92324 0.91927 0.92184 0.91998 0.91713 0.91051 0.90148 0.94717 0.90726 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.57 13.96 55.43 0.77 -22.80 16 2 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 3 Si 0.80 20.66 26.54 -169.99 -4.51 16.15 16 4 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16 7 C -1.02 -27.81 10.13 30.60 0.31 -27.50 16 8 H 0.13 3.40 5.94 -52.49 -0.31 3.09 16 9 S 2.67 66.38 4.22 -107.50 -0.45 65.92 16 10 O -1.01 -27.23 16.02 -57.17 -0.92 -28.14 16 11 O -1.01 -27.02 16.17 -57.17 -0.92 -27.94 16 12 N -1.12 -21.17 5.48 -4.79 -0.03 -21.20 16 13 C 0.16 2.66 2.86 -67.82 -0.19 2.47 16 14 C -0.14 -2.24 5.70 -26.66 -0.15 -2.39 16 15 C 0.06 0.76 5.29 -3.84 -0.02 0.74 16 16 N -0.53 -6.46 4.52 -226.69 -1.03 -7.48 16 17 C 0.09 0.88 1.96 -67.71 -0.13 0.75 16 18 C -0.11 -1.07 5.11 -26.74 -0.14 -1.21 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -1.02 4.66 -26.73 -0.12 -1.15 16 23 C 0.05 0.63 5.00 -3.83 -0.02 0.61 16 24 C -0.12 -1.59 5.63 -26.65 -0.15 -1.74 16 25 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.40 6.57 8.84 -34.46 -0.30 6.27 16 27 H 0.09 1.62 7.50 -51.93 -0.39 1.23 16 28 H 0.09 1.66 5.86 -51.93 -0.30 1.36 16 29 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.00 6.18 -51.93 -0.32 0.67 16 32 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.56 6.19 -51.93 -0.32 0.24 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.81 5.83 -51.93 -0.30 0.51 16 44 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -31.73 351.33 -10.71 -42.44 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.73 Total: 6.07 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -1.19 Total: -28.31 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.28 Total: -51.48 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -1.84 Total: -56.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.51 Total: 16.15 kcal Atomic # 16 Polarization: 66.38 SS G_CDS: -0.45 Total: 65.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.73 -10.71 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.127 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds