Wall clock time and date at job start Tue Mar 31 2020 11:48:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 119.99948 * 2 1
4 4 H 1.48497 * 109.46821 * 269.99838 * 3 2 1
5 5 H 1.48496 * 109.47182 * 29.99864 * 3 2 1
6 6 H 1.48500 * 109.46784 * 149.99829 * 3 2 1
7 7 C 1.37873 * 119.99487 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00692 * 0.02562 * 7 2 1
9 9 S 1.76210 * 119.99761 * 180.02562 * 7 2 1
10 10 O 1.42100 * 106.40048 * 66.45892 * 9 7 2
11 11 O 1.42105 * 106.39893 * 293.54172 * 9 7 2
12 12 N 1.65595 * 107.21720 * 180.02562 * 9 7 2
13 13 C 1.46494 * 120.00081 * 65.00412 * 12 9 7
14 14 C 1.53099 * 109.52641 * 264.67237 * 13 12 9
15 15 C 1.53034 * 109.29509 * 182.43578 * 14 13 12
16 16 N 1.46847 * 109.51345 * 59.18740 * 15 14 13
17 17 C 1.46898 * 110.99897 * 174.16738 * 16 15 14
18 18 C 1.52997 * 109.47395 * 294.99793 * 17 16 15
19 19 C 1.52995 * 109.47350 * 180.02562 * 18 17 16
20 20 C 1.53004 * 109.47019 * 59.99915 * 19 18 17
21 21 C 1.52997 * 109.47447 * 300.00010 * 20 19 18
22 22 C 1.53003 * 109.46913 * 59.99802 * 21 20 19
23 23 C 1.46854 * 111.19790 * 298.26320 * 16 15 14
24 24 C 1.53039 * 109.52227 * 61.74204 * 23 16 15
25 25 H 0.96996 * 119.99558 * 0.02562 * 1 2 3
26 26 H 0.97001 * 119.99624 * 244.99731 * 12 9 7
27 27 H 1.09002 * 109.52440 * 24.86856 * 13 12 9
28 28 H 1.09007 * 109.48839 * 62.49221 * 14 13 12
29 29 H 1.09009 * 109.50682 * 302.39007 * 14 13 12
30 30 H 1.09002 * 109.46271 * 299.17460 * 15 14 13
31 31 H 1.08994 * 109.46242 * 179.19760 * 15 14 13
32 32 H 1.09002 * 109.47182 * 54.99953 * 17 16 15
33 33 H 1.09004 * 109.46567 * 300.00205 * 18 17 16
34 34 H 1.09006 * 109.47022 * 59.99862 * 18 17 16
35 35 H 1.09002 * 109.47143 * 300.00107 * 19 18 17
36 36 H 1.08998 * 109.47122 * 179.97438 * 19 18 17
37 37 H 1.09001 * 109.47050 * 179.97438 * 20 19 18
38 38 H 1.09002 * 109.47006 * 60.00108 * 20 19 18
39 39 H 1.09003 * 109.46590 * 300.00613 * 21 20 19
40 40 H 1.08992 * 109.47107 * 180.02562 * 21 20 19
41 41 H 1.08998 * 109.47015 * 180.02562 * 22 21 20
42 42 H 1.08992 * 109.47098 * 60.00281 * 22 21 20
43 43 H 1.08993 * 109.46229 * 181.76227 * 23 16 15
44 44 H 1.09008 * 109.45803 * 301.73838 * 23 16 15
45 45 H 1.08994 * 109.50227 * 60.75933 * 24 23 16
46 46 H 1.09000 * 109.50337 * 180.88158 * 24 23 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 16 3.7666 -1.1942 0.0012
10 8 4.1673 -0.6494 1.2510
11 8 4.1683 -0.6500 -1.2485
12 7 4.2566 -2.7759 0.0011
13 6 3.9618 -3.6340 -1.1491
14 6 2.6761 -4.4217 -0.8836
15 6 2.4060 -5.3606 -2.0615
16 7 3.5392 -6.2800 -2.2258
17 6 3.2557 -7.2857 -3.2583
18 6 2.0993 -8.1761 -2.7993
19 6 1.8045 -9.2239 -3.8744
20 6 3.0495 -10.0830 -4.1042
21 6 4.2060 -9.1927 -4.5633
22 6 4.5007 -8.1448 -3.4881
23 6 4.7764 -5.5491 -2.5286
24 6 5.1170 -4.6158 -1.3646
25 1 -0.4849 0.8400 -0.0004
26 1 4.7390 -3.1342 0.7625
27 1 3.8357 -3.0186 -2.0399
28 1 1.8419 -3.7291 -0.7715
29 1 2.7894 -5.0064 0.0294
30 1 2.2790 -4.7743 -2.9716
31 1 1.4988 -5.9332 -1.8689
32 1 2.9825 -6.7855 -4.1874
33 1 2.3727 -8.6763 -1.8701
34 1 1.2124 -7.5639 -2.6351
35 1 1.5314 -8.7240 -4.8037
36 1 0.9809 -9.8585 -3.5471
37 1 2.8393 -10.8298 -4.8699
38 1 3.3226 -10.5829 -3.1749
39 1 3.9327 -8.6928 -5.4926
40 1 5.0927 -9.8048 -4.7274
41 1 5.3243 -7.5103 -3.8154
42 1 4.7738 -8.6446 -2.5589
43 1 5.5906 -6.2586 -2.6755
44 1 4.6382 -4.9618 -3.4365
45 1 5.2687 -5.2035 -0.4593
46 1 6.0267 -4.0619 -1.5964
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001193002514.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:53
Heat of formation + Delta-G solvation = -99.562817 kcal
Electronic energy + Delta-G solvation = -25772.708044 eV
Core-core repulsion = 22208.800475 eV
Total energy + Delta-G solvation = -3563.907569 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.161 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-39.84084 -37.68148 -35.58912 -34.66784 -34.39262 -33.02563 -31.51228 -31.02804
-30.24572 -28.10837 -26.38145 -23.78408 -23.51457 -21.76145 -21.41510 -19.84926
-19.75346 -18.97889 -17.46012 -16.76447 -16.56152 -15.60813 -15.01115 -14.95159
-14.78003 -14.66366 -14.22048 -13.98683 -13.63834 -13.48520 -13.31620 -13.13217
-13.03470 -12.85141 -12.64183 -12.25364 -11.74746 -11.68454 -11.50072 -11.37144
-11.26024 -11.03094 -11.00505 -10.87336 -10.72868 -10.66001 -10.57595 -10.46356
-10.35960 -10.23958 -9.97238 -9.69889 -9.19399 -9.08274 -8.55125 -8.23713
-6.78656 -5.32004 2.12663 3.08570 3.18979 3.28707 3.82539 3.97020
4.33362 4.49740 4.54808 4.61802 4.75864 4.97610 5.00336 5.08248
5.11544 5.21371 5.28135 5.30207 5.34051 5.39739 5.43608 5.48232
5.57898 5.59341 5.70952 5.77641 5.77811 5.81413 5.91949 5.94478
5.97429 6.01039 6.05734 6.10865 6.17392 6.24156 6.28093 6.32643
6.35902 6.65148 6.83500 7.18467 7.20129 7.49783 7.80986 8.24805
8.72992 10.33169
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.026953 B = 0.003297 C = 0.003074
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1038.611569 B = 8491.299029 C = 9107.106142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.824 5.824
2 C 0.154 3.846
3 Si 0.801 3.199
4 H -0.247 1.247
5 H -0.256 1.256
6 H -0.221 1.221
7 C -1.015 5.015
8 H 0.126 0.874
9 S 2.674 3.326
10 O -1.011 7.011
11 O -1.014 7.014
12 N -1.119 6.119
13 C 0.158 3.842
14 C -0.140 4.140
15 C 0.056 3.944
16 N -0.535 5.535
17 C 0.086 3.914
18 C -0.112 4.112
19 C -0.119 4.119
20 C -0.119 4.119
21 C -0.118 4.118
22 C -0.116 4.116
23 C 0.053 3.947
24 C -0.119 4.119
25 H 0.280 0.720
26 H 0.405 0.595
27 H 0.088 0.912
28 H 0.090 0.910
29 H 0.073 0.927
30 H 0.036 0.964
31 H 0.078 0.922
32 H 0.039 0.961
33 H 0.070 0.930
34 H 0.064 0.936
35 H 0.059 0.941
36 H 0.062 0.938
37 H 0.058 0.942
38 H 0.062 0.938
39 H 0.059 0.941
40 H 0.061 0.939
41 H 0.064 0.936
42 H 0.071 0.929
43 H 0.080 0.920
44 H 0.035 0.965
45 H 0.074 0.926
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.864 -18.320 -7.630 20.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.065 4.065
3 Si 0.621 3.379
4 H -0.171 1.171
5 H -0.180 1.180
6 H -0.143 1.143
7 C -1.150 5.150
8 H 0.144 0.856
9 S 2.775 3.225
10 O -1.001 7.001
11 O -1.004 7.004
12 N -0.873 5.873
13 C 0.050 3.950
14 C -0.180 4.180
15 C -0.072 4.072
16 N -0.260 5.260
17 C -0.022 4.022
18 C -0.150 4.150
19 C -0.157 4.157
20 C -0.157 4.157
21 C -0.156 4.156
22 C -0.154 4.154
23 C -0.075 4.075
24 C -0.159 4.159
25 H 0.090 0.910
26 H 0.236 0.764
27 H 0.106 0.894
28 H 0.108 0.892
29 H 0.092 0.908
30 H 0.054 0.946
31 H 0.097 0.903
32 H 0.057 0.943
33 H 0.089 0.911
34 H 0.083 0.917
35 H 0.078 0.922
36 H 0.081 0.919
37 H 0.077 0.923
38 H 0.081 0.919
39 H 0.078 0.922
40 H 0.080 0.920
41 H 0.083 0.917
42 H 0.089 0.911
43 H 0.099 0.901
44 H 0.053 0.947
45 H 0.093 0.907
46 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 6.262 -17.635 -7.340 20.102
hybrid contribution -0.482 0.751 -0.417 0.985
sum 5.780 -16.884 -7.757 19.459
Atomic orbital electron populations
1.69990 1.06550 1.28965 1.39791 1.24417 0.94762 0.98744 0.88617
0.87871 0.83612 0.84653 0.81739 1.17114 1.18008 1.14262 1.30576
1.15621 1.02195 1.66563 0.85637 1.01366 0.77387 0.70511 0.73203
1.93471 1.85544 1.76043 1.45050 1.93401 1.85066 1.76225 1.45678
1.55521 1.73830 1.31180 1.26764 1.20651 0.93981 0.91552 0.88820
1.22272 0.99158 0.98232 0.98289 1.22130 0.93444 0.93653 0.98005
1.62011 1.03392 1.15344 1.45230 1.21598 0.95529 0.92419 0.92691
1.21599 0.97687 0.96866 0.98851 1.21529 0.97534 0.97474 0.99132
1.21543 0.95258 0.97725 1.01175 1.21525 0.98270 0.97328 0.98492
1.21706 0.97105 0.97186 0.99418 1.22152 0.92742 0.95819 0.96808
1.21884 0.98178 0.96706 0.99123 0.90978 0.76384 0.89422 0.89194
0.90834 0.94619 0.90341 0.94339 0.91093 0.91717 0.92187 0.91926
0.92324 0.91927 0.92184 0.91998 0.91713 0.91051 0.90148 0.94717
0.90726 0.91039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -23.57 13.96 55.43 0.77 -22.80 16
2 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16
3 Si 0.80 20.66 26.54 -169.99 -4.51 16.15 16
4 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16
5 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16
6 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16
7 C -1.02 -27.81 10.13 30.60 0.31 -27.50 16
8 H 0.13 3.40 5.94 -52.49 -0.31 3.09 16
9 S 2.67 66.38 4.22 -107.50 -0.45 65.92 16
10 O -1.01 -27.23 16.02 -57.17 -0.92 -28.14 16
11 O -1.01 -27.02 16.17 -57.17 -0.92 -27.94 16
12 N -1.12 -21.17 5.48 -4.79 -0.03 -21.20 16
13 C 0.16 2.66 2.86 -67.82 -0.19 2.47 16
14 C -0.14 -2.24 5.70 -26.66 -0.15 -2.39 16
15 C 0.06 0.76 5.29 -3.84 -0.02 0.74 16
16 N -0.53 -6.46 4.52 -226.69 -1.03 -7.48 16
17 C 0.09 0.88 1.96 -67.71 -0.13 0.75 16
18 C -0.11 -1.07 5.11 -26.74 -0.14 -1.21 16
19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16
20 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16
21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16
22 C -0.12 -1.02 4.66 -26.73 -0.12 -1.15 16
23 C 0.05 0.63 5.00 -3.83 -0.02 0.61 16
24 C -0.12 -1.59 5.63 -26.65 -0.15 -1.74 16
25 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16
26 H 0.40 6.57 8.84 -34.46 -0.30 6.27 16
27 H 0.09 1.62 7.50 -51.93 -0.39 1.23 16
28 H 0.09 1.66 5.86 -51.93 -0.30 1.36 16
29 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16
30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16
31 H 0.08 1.00 6.18 -51.93 -0.32 0.67 16
32 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16
35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
41 H 0.06 0.56 6.19 -51.93 -0.32 0.24 16
42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
43 H 0.08 0.81 5.83 -51.93 -0.30 0.51 16
44 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16
45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 351.33 15.07 5.29 5.29
Total: -1.00 -31.73 351.33 -10.71 -42.44
By element:
Atomic # 1 Polarization: 13.80 SS G_CDS: -7.73 Total: 6.07 kcal
Atomic # 6 Polarization: -27.12 SS G_CDS: -1.19 Total: -28.31 kcal
Atomic # 7 Polarization: -51.20 SS G_CDS: -0.28 Total: -51.48 kcal
Atomic # 8 Polarization: -54.24 SS G_CDS: -1.84 Total: -56.09 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -4.51 Total: 16.15 kcal
Atomic # 16 Polarization: 66.38 SS G_CDS: -0.45 Total: 65.92 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -31.73 -10.71 -42.44 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001193002514.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.127 kcal
(2) G-P(sol) polarization free energy of solvation -31.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.857 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds