Wall clock time and date at job start Tue Mar 31 2020 11:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48497 * 109.46821 * 269.99838 * 3 2 1 5 5 H 1.48496 * 109.47182 * 29.99864 * 3 2 1 6 6 H 1.48500 * 109.46784 * 149.99829 * 3 2 1 7 7 C 1.37873 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00692 * 0.02562 * 7 2 1 9 9 S 1.76210 * 119.99761 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40048 * 66.45892 * 9 7 2 11 11 O 1.42105 * 106.39893 * 293.54172 * 9 7 2 12 12 N 1.65595 * 107.21720 * 180.02562 * 9 7 2 13 13 C 1.46494 * 120.00081 * 65.00412 * 12 9 7 14 14 C 1.53099 * 109.52641 * 264.67237 * 13 12 9 15 15 C 1.53034 * 109.29509 * 182.43578 * 14 13 12 16 16 N 1.46847 * 109.51345 * 59.18740 * 15 14 13 17 17 C 1.46898 * 110.99897 * 174.16738 * 16 15 14 18 18 C 1.52997 * 109.47395 * 294.99793 * 17 16 15 19 19 C 1.52995 * 109.47350 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47019 * 59.99915 * 19 18 17 21 21 C 1.52997 * 109.47447 * 300.00010 * 20 19 18 22 22 C 1.53003 * 109.46913 * 59.99802 * 21 20 19 23 23 C 1.46854 * 111.19790 * 298.26320 * 16 15 14 24 24 C 1.53039 * 109.52227 * 61.74204 * 23 16 15 25 25 H 0.96996 * 119.99558 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99624 * 244.99731 * 12 9 7 27 27 H 1.09002 * 109.52440 * 24.86856 * 13 12 9 28 28 H 1.09007 * 109.48839 * 62.49221 * 14 13 12 29 29 H 1.09009 * 109.50682 * 302.39007 * 14 13 12 30 30 H 1.09002 * 109.46271 * 299.17460 * 15 14 13 31 31 H 1.08994 * 109.46242 * 179.19760 * 15 14 13 32 32 H 1.09002 * 109.47182 * 54.99953 * 17 16 15 33 33 H 1.09004 * 109.46567 * 300.00205 * 18 17 16 34 34 H 1.09006 * 109.47022 * 59.99862 * 18 17 16 35 35 H 1.09002 * 109.47143 * 300.00107 * 19 18 17 36 36 H 1.08998 * 109.47122 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47050 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47006 * 60.00108 * 20 19 18 39 39 H 1.09003 * 109.46590 * 300.00613 * 21 20 19 40 40 H 1.08992 * 109.47107 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47015 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47098 * 60.00281 * 22 21 20 43 43 H 1.08993 * 109.46229 * 181.76227 * 23 16 15 44 44 H 1.09008 * 109.45803 * 301.73838 * 23 16 15 45 45 H 1.08994 * 109.50227 * 60.75933 * 24 23 16 46 46 H 1.09000 * 109.50337 * 180.88158 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1942 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1683 -0.6500 -1.2485 12 7 4.2566 -2.7759 0.0011 13 6 3.9618 -3.6340 -1.1491 14 6 2.6761 -4.4217 -0.8836 15 6 2.4060 -5.3606 -2.0615 16 7 3.5392 -6.2800 -2.2258 17 6 3.2557 -7.2857 -3.2583 18 6 2.0993 -8.1761 -2.7993 19 6 1.8045 -9.2239 -3.8744 20 6 3.0495 -10.0830 -4.1042 21 6 4.2060 -9.1927 -4.5633 22 6 4.5007 -8.1448 -3.4881 23 6 4.7764 -5.5491 -2.5286 24 6 5.1170 -4.6158 -1.3646 25 1 -0.4849 0.8400 -0.0004 26 1 4.7390 -3.1342 0.7625 27 1 3.8357 -3.0186 -2.0399 28 1 1.8419 -3.7291 -0.7715 29 1 2.7894 -5.0064 0.0294 30 1 2.2790 -4.7743 -2.9716 31 1 1.4988 -5.9332 -1.8689 32 1 2.9825 -6.7855 -4.1874 33 1 2.3727 -8.6763 -1.8701 34 1 1.2124 -7.5639 -2.6351 35 1 1.5314 -8.7240 -4.8037 36 1 0.9809 -9.8585 -3.5471 37 1 2.8393 -10.8298 -4.8699 38 1 3.3226 -10.5829 -3.1749 39 1 3.9327 -8.6928 -5.4926 40 1 5.0927 -9.8048 -4.7274 41 1 5.3243 -7.5103 -3.8154 42 1 4.7738 -8.6446 -2.5589 43 1 5.5906 -6.2586 -2.6755 44 1 4.6382 -4.9618 -3.4365 45 1 5.2687 -5.2035 -0.4593 46 1 6.0267 -4.0619 -1.5964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:52 Heat of formation + Delta-G solvation = -123.117830 kcal Electronic energy + Delta-G solvation = -25773.729466 eV Core-core repulsion = 22208.800475 eV Total energy + Delta-G solvation = -3564.928991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78526 -38.67015 -37.64185 -36.48661 -35.86487 -35.17559 -32.39853 -32.17542 -31.14592 -29.12263 -28.49772 -24.75420 -24.59054 -22.62685 -22.27910 -21.19274 -20.76245 -20.52813 -19.43325 -18.59832 -17.79513 -17.16642 -16.70887 -15.97615 -15.84321 -15.75000 -15.43293 -15.37432 -15.04462 -14.91538 -14.62620 -14.45608 -14.35502 -14.03662 -13.57831 -13.49839 -13.39356 -13.01789 -12.84136 -12.71732 -12.58124 -12.54180 -12.33820 -12.13683 -12.06783 -11.96462 -11.92548 -11.83754 -11.42992 -11.33886 -11.22688 -11.11079 -11.06189 -10.72435 -10.16290 -9.22895 -8.94517 -7.49221 0.17317 1.04553 1.13544 1.21306 1.89256 2.43246 2.57144 2.88998 3.32352 3.72723 3.78822 3.88113 3.97958 4.06671 4.13537 4.22299 4.25556 4.37794 4.38122 4.46673 4.51238 4.51848 4.62976 4.65735 4.66476 4.68492 4.81087 4.90284 4.91251 4.98467 5.04553 5.18463 5.20919 5.22702 5.28007 5.33453 5.35691 5.39442 5.41053 5.44289 5.49780 5.61295 6.09321 6.17686 6.24679 6.35808 6.56939 8.22264 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.003297 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.611569 B = 8491.299029 C = 9107.106142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.111 3.889 3 Si 0.821 3.179 4 H -0.241 1.241 5 H -0.222 1.222 6 H -0.231 1.231 7 C -1.035 5.035 8 H 0.117 0.883 9 S 2.694 3.306 10 O -1.032 7.032 11 O -1.033 7.033 12 N -1.103 6.103 13 C 0.150 3.850 14 C -0.136 4.136 15 C 0.061 3.939 16 N -0.534 5.534 17 C 0.085 3.915 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.112 4.112 23 C 0.053 3.947 24 C -0.112 4.112 25 H 0.290 0.710 26 H 0.420 0.580 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -19.917 -8.110 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.105 4.105 3 Si 0.639 3.361 4 H -0.165 1.165 5 H -0.144 1.144 6 H -0.153 1.153 7 C -1.167 5.167 8 H 0.135 0.865 9 S 2.794 3.206 10 O -1.022 7.022 11 O -1.023 7.023 12 N -0.862 5.862 13 C 0.042 3.958 14 C -0.176 4.176 15 C -0.067 4.067 16 N -0.259 5.259 17 C -0.023 4.023 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.151 4.151 25 H 0.100 0.900 26 H 0.255 0.745 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.560 -19.228 -7.811 22.089 hybrid contribution -0.905 1.142 -0.284 1.485 sum 6.655 -18.086 -8.096 20.903 Atomic orbital electron populations 1.70011 1.07319 1.30289 1.40644 1.25101 0.95556 1.01182 0.88705 0.87542 0.82907 0.83260 0.82386 1.16482 1.14389 1.15339 1.31076 1.17747 1.01973 1.65943 0.86495 1.00574 0.75996 0.71788 0.72261 1.93433 1.85349 1.77630 1.45802 1.93372 1.84824 1.77650 1.46411 1.55045 1.73388 1.29597 1.28205 1.20898 0.96149 0.91686 0.87033 1.22174 0.97569 0.98048 0.99803 1.22014 0.94695 0.93563 0.96454 1.62034 1.02775 1.14981 1.46135 1.21686 0.96785 0.92128 0.91730 1.21579 0.96962 0.97000 0.99289 1.21517 0.98310 0.97210 0.98424 1.21539 0.94655 0.97718 1.01616 1.21518 0.98894 0.97103 0.97879 1.21679 0.96185 0.97244 0.99873 1.22217 0.93408 0.96064 0.95806 1.21863 0.96702 0.96133 1.00440 0.89968 0.74477 0.91483 0.92353 0.89997 0.95651 0.89524 0.95127 0.91416 0.92724 0.92373 0.91279 0.91236 0.91800 0.92322 0.90755 0.91321 0.91107 0.87557 0.95284 0.89342 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.27 13.96 21.45 0.30 -48.97 16 2 C 0.11 6.40 5.47 84.65 0.46 6.86 16 3 Si 0.82 41.49 26.54 68.60 1.82 43.31 16 4 H -0.24 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.22 -9.90 7.11 99.48 0.71 -9.20 16 6 H -0.23 -12.02 5.61 99.48 0.56 -11.46 16 7 C -1.03 -57.76 10.13 67.73 0.69 -57.08 16 8 H 0.12 6.56 5.94 -2.91 -0.02 6.55 16 9 S 2.69 134.02 4.22 -56.49 -0.24 133.78 16 10 O -1.03 -55.34 16.02 -128.00 -2.05 -57.39 16 11 O -1.03 -55.12 16.17 -128.00 -2.07 -57.19 16 12 N -1.10 -41.13 5.48 -169.08 -0.93 -42.05 16 13 C 0.15 4.97 2.86 45.07 0.13 5.10 16 14 C -0.14 -4.39 5.70 30.64 0.17 -4.22 16 15 C 0.06 1.66 5.29 86.32 0.46 2.12 16 16 N -0.53 -12.11 4.52 -871.11 -3.94 -16.05 16 17 C 0.08 1.61 1.96 44.92 0.09 1.70 16 18 C -0.11 -1.97 5.11 30.59 0.16 -1.81 16 19 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 20 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 21 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 22 C -0.11 -1.69 4.66 30.60 0.14 -1.55 16 23 C 0.05 1.15 5.00 86.32 0.43 1.58 16 24 C -0.11 -2.74 5.63 30.65 0.17 -2.57 16 25 H 0.29 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.42 13.07 8.84 -96.75 -0.86 12.22 16 27 H 0.07 2.51 7.50 -2.39 -0.02 2.50 16 28 H 0.06 2.24 5.86 -2.38 -0.01 2.23 16 29 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 2.19 6.18 -2.39 -0.01 2.18 16 32 H 0.03 0.64 8.13 -2.39 -0.02 0.63 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.07 6.40 -2.38 -0.02 1.05 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.98 6.19 -2.39 -0.01 0.97 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.11 1.80 5.83 -2.39 -0.01 1.79 16 44 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.50 351.33 -3.69 -71.19 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.03 Total: 27.25 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 3.44 Total: -53.88 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.57 Total: -107.07 kcal Atomic # 8 Polarization: -110.46 SS G_CDS: -4.12 Total: -114.58 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.82 Total: 43.31 kcal Atomic # 16 Polarization: 134.02 SS G_CDS: -0.24 Total: 133.78 kcal Total: -67.50 -3.69 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.926 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds