Wall clock time and date at job start Tue Mar 31 2020 11:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47259 * 240.00021 * 3 2 1 5 5 H 1.48507 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47542 * 119.99943 * 3 2 1 7 7 C 1.39948 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00406 * 168.86776 * 7 2 1 9 9 C 1.41401 * 119.99500 * 348.86742 * 7 2 1 10 10 C 1.40739 * 120.24513 * 330.64800 * 9 7 2 11 11 C 1.37596 * 119.74125 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.25096 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50136 * 359.68593 * 12 11 10 14 14 C 1.37642 * 120.24683 * 0.59492 * 13 12 11 15 15 C 1.50693 * 120.12644 * 179.70436 * 14 13 12 16 16 N 1.46899 * 109.47552 * 104.15163 * 15 14 13 17 17 C 1.46858 * 111.00147 * 164.69820 * 16 15 14 18 18 C 1.53141 * 109.45521 * 186.33160 * 17 16 15 19 19 C 1.52589 * 109.30838 * 301.66807 * 18 17 16 20 20 C 1.53644 * 110.26191 * 178.49603 * 19 18 17 21 21 N 1.47226 * 103.58557 * 118.91950 * 20 19 18 22 22 C 1.34083 * 108.84721 * 359.97438 * 21 20 19 23 23 O 1.21508 * 123.09044 * 180.02562 * 22 21 20 24 24 O 1.33923 * 113.82060 * 0.02562 * 22 21 20 25 25 C 1.52586 * 110.40531 * 56.40939 * 19 18 17 26 26 C 1.46854 * 111.00679 * 289.04619 * 16 15 14 27 27 H 0.97002 * 119.99467 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.12474 * 359.95341 * 10 9 7 29 29 H 1.07998 * 119.86917 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.75110 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.87818 * 180.29752 * 13 12 11 32 32 H 1.09005 * 109.47392 * 344.14893 * 15 14 13 33 33 H 1.09000 * 109.47157 * 224.15287 * 15 14 13 34 34 H 1.08996 * 109.47141 * 66.33594 * 17 16 15 35 35 H 1.08998 * 109.47413 * 306.33052 * 17 16 15 36 36 H 1.08992 * 109.50078 * 61.62460 * 18 17 16 37 37 H 1.09006 * 109.49677 * 181.72077 * 18 17 16 38 38 H 1.09005 * 110.59912 * 237.44300 * 20 19 18 39 39 H 1.08997 * 110.60460 * 0.24094 * 20 19 18 40 40 H 0.96996 * 125.57860 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.50112 * 63.54146 * 25 19 18 42 42 H 1.09000 * 109.49646 * 183.64671 * 25 19 18 43 43 H 1.09004 * 109.47134 * 53.68103 * 26 16 15 44 44 H 1.09001 * 109.47940 * 293.67448 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0727 -1.2209 -0.1800 9 6 1.3209 -2.4249 0.2375 10 6 0.1670 -2.4402 1.0431 11 6 -0.4938 -3.6262 1.2665 12 6 -0.0267 -4.8032 0.7018 13 6 1.1054 -4.7989 -0.0981 14 6 1.7857 -3.6252 -0.3305 15 6 3.0199 -3.6248 -1.1951 16 7 2.6940 -3.0652 -2.5137 17 6 3.9136 -2.7114 -3.2514 18 6 3.5343 -1.9895 -4.5476 19 6 2.6345 -2.8943 -5.3843 20 6 2.2098 -2.1762 -6.6745 21 7 2.7569 -3.0301 -7.7418 22 6 3.3932 -4.0691 -7.1818 23 8 3.9432 -4.9376 -7.8296 24 8 3.3667 -4.0617 -5.8429 25 6 1.4051 -3.3107 -4.5822 26 6 1.8533 -3.9899 -3.2849 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1981 -1.5247 1.4845 29 1 -1.3793 -3.6405 1.8846 30 1 -0.5514 -5.7297 0.8827 31 1 1.4577 -5.7208 -0.5368 32 1 3.3812 -4.6464 -1.3132 33 1 3.7933 -3.0181 -0.7241 34 1 4.4698 -3.6180 -3.4897 35 1 4.5321 -2.0562 -2.6381 36 1 3.0030 -1.0683 -4.3089 37 1 4.4376 -1.7537 -5.1104 38 1 1.1233 -2.1237 -6.7444 39 1 2.6445 -1.1776 -6.7186 40 1 2.6718 -2.8674 -8.6942 41 1 0.8100 -2.4291 -4.3445 42 1 0.8064 -4.0071 -5.1694 43 1 0.9774 -4.2619 -2.6958 44 1 2.4241 -4.8875 -3.5229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235530133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:58 Heat of formation + Delta-G solvation = -48.714300 kcal Electronic energy + Delta-G solvation = -27288.678671 eV Core-core repulsion = 23591.532108 eV Total energy + Delta-G solvation = -3697.146563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88631 -38.69724 -37.61434 -36.46659 -34.83379 -33.54573 -32.95933 -30.85262 -30.10212 -29.34952 -27.04383 -25.32327 -24.10190 -23.19469 -22.64545 -22.08441 -20.89799 -20.04476 -19.41455 -17.50690 -17.09706 -16.69067 -16.49576 -15.53095 -15.38141 -14.93854 -14.75881 -14.60143 -14.12007 -13.98531 -13.88134 -13.63522 -13.52127 -13.19780 -12.80602 -12.54396 -12.17166 -11.93849 -11.59830 -11.51679 -11.34705 -11.13862 -11.09937 -10.99767 -10.87102 -10.77470 -10.59692 -10.40901 -10.31350 -10.12153 -9.52022 -9.48681 -9.24075 -9.14388 -7.61865 -7.33262 -7.25535 -6.63842 -4.25707 2.64269 2.67107 2.81667 2.97381 3.08332 3.11213 3.26487 3.41658 3.98215 3.98590 4.40932 4.48646 4.57103 4.75917 5.01102 5.14506 5.15684 5.33869 5.55466 5.64555 5.68397 5.72651 5.75806 5.83381 6.03286 6.05690 6.16813 6.21270 6.26365 6.37081 6.40915 6.49133 6.55047 6.60420 6.82083 7.15973 7.22571 7.29097 7.41697 7.65900 7.67429 7.74545 7.97205 8.00104 8.10456 8.13476 8.37379 8.69571 8.98520 9.04396 10.31046 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.004554 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.916247 B = 6146.932344 C = 7373.867009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.435 4.435 8 H 0.074 0.926 9 C 0.132 3.868 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.242 4.242 13 C -0.090 4.090 14 C -0.190 4.190 15 C 0.130 3.870 16 N -0.513 5.513 17 C 0.058 3.942 18 C -0.113 4.113 19 C 0.098 3.902 20 C 0.073 3.927 21 N -0.739 5.739 22 C 0.643 3.357 23 O -0.534 6.534 24 O -0.314 6.314 25 C -0.113 4.113 26 C 0.062 3.938 27 H 0.276 0.724 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.432 0.568 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 1.039 -9.990 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.093 0.907 9 C 0.129 3.871 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.262 4.262 13 C -0.108 4.108 14 C -0.192 4.192 15 C 0.004 3.996 16 N -0.237 5.237 17 C -0.071 4.071 18 C -0.151 4.151 19 C 0.061 3.939 20 C -0.052 4.052 21 N -0.412 5.412 22 C 0.396 3.604 23 O -0.420 6.420 24 O -0.224 6.224 25 C -0.150 4.150 26 C -0.066 4.066 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.274 0.726 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.483 0.996 -9.899 10.254 hybrid contribution 0.498 0.301 -0.709 0.917 sum 2.980 1.297 -10.608 11.095 Atomic orbital electron populations 1.69799 1.07327 1.28681 1.37191 1.25789 0.94648 1.00737 0.92698 0.86466 0.80072 0.80923 0.79719 1.19152 1.20689 1.19220 1.19357 0.95649 0.90065 1.41423 0.90745 1.17347 0.90799 0.91511 0.87394 1.21364 0.98978 0.96322 1.01276 1.20688 0.98464 0.93659 0.99825 1.20307 1.01042 0.96547 1.08291 1.20385 0.95841 0.95798 0.98818 1.19445 1.00671 0.94144 1.04942 1.20558 0.96279 0.95311 0.87434 1.61869 1.16203 1.43214 1.02428 1.21992 0.92577 0.98698 0.93796 1.21859 0.98975 0.98444 0.95776 1.22998 0.93469 0.83458 0.93973 1.22963 1.01134 0.95576 0.85514 1.46014 1.58740 1.26311 1.10098 1.18699 0.78171 0.82026 0.81467 1.91047 1.49098 1.39764 1.62050 1.87342 1.70305 1.45444 1.19305 1.21870 0.94290 1.02811 0.96077 1.21952 0.98630 0.92925 0.93082 0.91268 0.86522 0.89776 0.89884 0.89961 0.96602 0.91162 0.95126 0.90306 0.88192 0.91038 0.88647 0.88711 0.72603 0.88167 0.91050 0.89406 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.81 10.90 55.55 0.61 -19.21 16 2 C 0.08 1.82 5.24 -17.34 -0.09 1.73 16 3 Si 0.90 17.87 29.57 -169.99 -5.03 12.84 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.43 -10.56 8.36 -37.74 -0.32 -10.88 16 8 H 0.07 1.75 6.64 -52.49 -0.35 1.41 16 9 C 0.13 3.26 5.54 -106.82 -0.59 2.67 16 10 C -0.16 -4.00 8.65 -38.87 -0.34 -4.33 16 11 C -0.11 -2.48 10.02 -39.66 -0.40 -2.87 16 12 C -0.24 -5.31 10.05 -39.29 -0.39 -5.70 16 13 C -0.09 -1.93 8.92 -39.66 -0.35 -2.28 16 14 C -0.19 -4.23 4.71 -103.92 -0.49 -4.72 16 15 C 0.13 2.51 4.46 -4.98 -0.02 2.49 16 16 N -0.51 -9.02 4.53 -235.96 -1.07 -10.09 16 17 C 0.06 0.86 5.37 -3.77 -0.02 0.84 16 18 C -0.11 -1.38 4.94 -26.87 -0.13 -1.51 16 19 C 0.10 1.18 0.92 -90.71 -0.08 1.10 16 20 C 0.07 0.63 7.34 -3.31 -0.02 0.60 16 21 N -0.74 -7.25 6.41 -64.81 -0.42 -7.67 16 22 C 0.64 9.35 9.16 53.75 0.49 9.84 16 23 O -0.53 -9.71 18.04 -19.10 -0.34 -10.05 16 24 O -0.31 -4.67 9.87 -38.21 -0.38 -5.05 16 25 C -0.11 -1.49 4.94 -26.87 -0.13 -1.62 16 26 C 0.06 1.02 5.23 -3.77 -0.02 1.00 16 27 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 28 H 0.12 3.03 6.29 -52.49 -0.33 2.70 16 29 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.08 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.08 1.60 8.00 -52.49 -0.42 1.18 16 32 H 0.02 0.29 7.88 -51.93 -0.41 -0.12 16 33 H 0.07 1.36 6.72 -51.93 -0.35 1.01 16 34 H 0.03 0.47 7.95 -51.93 -0.41 0.06 16 35 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.67 7.71 -51.93 -0.40 0.27 16 39 H 0.09 0.64 7.71 -51.93 -0.40 0.24 16 40 H 0.43 3.11 8.96 -40.82 -0.37 2.74 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.62 6.71 -51.93 -0.35 1.27 16 44 H 0.03 0.48 7.95 -51.93 -0.41 0.06 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -29.27 351.98 -10.52 -39.79 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.28 Total: 7.78 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.91 Total: -13.64 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.88 Total: -36.97 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.72 Total: -15.10 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.27 -10.52 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235530133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds