Wall clock time and date at job start Tue Mar 31 2020 11:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48500 * 109.47259 * 240.00021 * 3 2 1 5 5 H 1.48507 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47542 * 119.99943 * 3 2 1 7 7 C 1.39948 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00406 * 168.86776 * 7 2 1 9 9 C 1.41401 * 119.99500 * 348.86742 * 7 2 1 10 10 C 1.40739 * 120.24513 * 330.64800 * 9 7 2 11 11 C 1.37596 * 119.74125 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.25096 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50136 * 359.68593 * 12 11 10 14 14 C 1.37642 * 120.24683 * 0.59492 * 13 12 11 15 15 C 1.50693 * 120.12644 * 179.70436 * 14 13 12 16 16 N 1.46899 * 109.47552 * 104.15163 * 15 14 13 17 17 C 1.46858 * 111.00147 * 164.69820 * 16 15 14 18 18 C 1.53141 * 109.45521 * 186.33160 * 17 16 15 19 19 C 1.52589 * 109.30838 * 301.66807 * 18 17 16 20 20 C 1.53644 * 110.26191 * 178.49603 * 19 18 17 21 21 N 1.47226 * 103.58557 * 118.91950 * 20 19 18 22 22 C 1.34083 * 108.84721 * 359.97438 * 21 20 19 23 23 O 1.21508 * 123.09044 * 180.02562 * 22 21 20 24 24 O 1.33923 * 113.82060 * 0.02562 * 22 21 20 25 25 C 1.52586 * 110.40531 * 56.40939 * 19 18 17 26 26 C 1.46854 * 111.00679 * 289.04619 * 16 15 14 27 27 H 0.97002 * 119.99467 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.12474 * 359.95341 * 10 9 7 29 29 H 1.07998 * 119.86917 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.75110 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.87818 * 180.29752 * 13 12 11 32 32 H 1.09005 * 109.47392 * 344.14893 * 15 14 13 33 33 H 1.09000 * 109.47157 * 224.15287 * 15 14 13 34 34 H 1.08996 * 109.47141 * 66.33594 * 17 16 15 35 35 H 1.08998 * 109.47413 * 306.33052 * 17 16 15 36 36 H 1.08992 * 109.50078 * 61.62460 * 18 17 16 37 37 H 1.09006 * 109.49677 * 181.72077 * 18 17 16 38 38 H 1.09005 * 110.59912 * 237.44300 * 20 19 18 39 39 H 1.08997 * 110.60460 * 0.24094 * 20 19 18 40 40 H 0.96996 * 125.57860 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.50112 * 63.54146 * 25 19 18 42 42 H 1.09000 * 109.49646 * 183.64671 * 25 19 18 43 43 H 1.09004 * 109.47134 * 53.68103 * 26 16 15 44 44 H 1.09001 * 109.47940 * 293.67448 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0727 -1.2209 -0.1800 9 6 1.3209 -2.4249 0.2375 10 6 0.1670 -2.4402 1.0431 11 6 -0.4938 -3.6262 1.2665 12 6 -0.0267 -4.8032 0.7018 13 6 1.1054 -4.7989 -0.0981 14 6 1.7857 -3.6252 -0.3305 15 6 3.0199 -3.6248 -1.1951 16 7 2.6940 -3.0652 -2.5137 17 6 3.9136 -2.7114 -3.2514 18 6 3.5343 -1.9895 -4.5476 19 6 2.6345 -2.8943 -5.3843 20 6 2.2098 -2.1762 -6.6745 21 7 2.7569 -3.0301 -7.7418 22 6 3.3932 -4.0691 -7.1818 23 8 3.9432 -4.9376 -7.8296 24 8 3.3667 -4.0617 -5.8429 25 6 1.4051 -3.3107 -4.5822 26 6 1.8533 -3.9899 -3.2849 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1981 -1.5247 1.4845 29 1 -1.3793 -3.6405 1.8846 30 1 -0.5514 -5.7297 0.8827 31 1 1.4577 -5.7208 -0.5368 32 1 3.3812 -4.6464 -1.3132 33 1 3.7933 -3.0181 -0.7241 34 1 4.4698 -3.6180 -3.4897 35 1 4.5321 -2.0562 -2.6381 36 1 3.0030 -1.0683 -4.3089 37 1 4.4376 -1.7537 -5.1104 38 1 1.1233 -2.1237 -6.7444 39 1 2.6445 -1.1776 -6.7186 40 1 2.6718 -2.8674 -8.6942 41 1 0.8100 -2.4291 -4.3445 42 1 0.8064 -4.0071 -5.1694 43 1 0.9774 -4.2619 -2.6958 44 1 2.4241 -4.8875 -3.5229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235530133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:57 Heat of formation + Delta-G solvation = -67.837005 kcal Electronic energy + Delta-G solvation = -27289.507893 eV Core-core repulsion = 23591.532108 eV Total energy + Delta-G solvation = -3697.975786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.89162 -40.08138 -39.09791 -37.79978 -35.75584 -35.33246 -34.24657 -32.01930 -31.66156 -31.09550 -28.25686 -26.99844 -25.47208 -24.36598 -23.67345 -23.23842 -22.68608 -21.27899 -21.00717 -18.89482 -18.53187 -17.71654 -17.54665 -17.14131 -16.66694 -16.28375 -16.03026 -15.94136 -15.64559 -15.21473 -15.03049 -14.87423 -14.85104 -14.35921 -14.27710 -13.94304 -13.47182 -13.36461 -13.14921 -12.87201 -12.75488 -12.68704 -12.61357 -12.35929 -12.28764 -12.13511 -12.00776 -11.98636 -11.50599 -11.28403 -11.25098 -10.95735 -10.90847 -10.34694 -9.17487 -9.09023 -8.93801 -8.40806 -6.10618 1.09042 1.19858 1.48175 1.56752 1.59479 1.62969 1.73226 2.32965 2.52768 2.93353 3.13048 3.19591 3.48650 3.56598 3.92539 4.05707 4.17749 4.33787 4.35073 4.44892 4.46367 4.52690 4.56989 4.60539 4.70290 4.73431 4.78639 4.82424 4.89403 4.99121 5.06979 5.08781 5.10835 5.25989 5.36166 5.46537 5.63077 5.80770 5.87796 6.09993 6.21146 6.24239 6.29663 6.38136 6.44340 6.57936 6.86939 7.03946 7.16478 7.22388 8.55704 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.004554 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.916247 B = 6146.932344 C = 7373.867009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.040 3.960 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.075 0.925 9 C 0.106 3.894 10 C -0.189 4.189 11 C -0.116 4.116 12 C -0.244 4.244 13 C -0.095 4.095 14 C -0.190 4.190 15 C 0.135 3.865 16 N -0.523 5.523 17 C 0.056 3.944 18 C -0.108 4.108 19 C 0.095 3.905 20 C 0.079 3.921 21 N -0.716 5.716 22 C 0.639 3.361 23 O -0.581 6.581 24 O -0.335 6.335 25 C -0.107 4.107 26 C 0.065 3.935 27 H 0.280 0.720 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.446 0.554 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 2.219 -11.652 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.483 4.483 8 H 0.093 0.907 9 C 0.104 3.896 10 C -0.208 4.208 11 C -0.134 4.134 12 C -0.264 4.264 13 C -0.114 4.114 14 C -0.192 4.192 15 C 0.009 3.991 16 N -0.248 5.248 17 C -0.072 4.072 18 C -0.145 4.145 19 C 0.058 3.942 20 C -0.044 4.044 21 N -0.389 5.389 22 C 0.392 3.608 23 O -0.470 6.470 24 O -0.245 6.245 25 C -0.145 4.145 26 C -0.063 4.063 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.291 0.709 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.710 2.197 -11.575 12.090 hybrid contribution 0.379 -0.163 -0.124 0.431 sum 3.089 2.034 -11.700 12.270 Atomic orbital electron populations 1.69885 1.08723 1.29618 1.37989 1.26508 0.95249 1.03638 0.91882 0.85456 0.78773 0.76803 0.79876 1.17836 1.20294 1.19455 1.19491 0.95670 0.90701 1.42448 0.90742 1.17657 0.91240 0.92730 0.87992 1.21339 1.00302 0.96407 1.02783 1.20916 0.98941 0.93498 1.00077 1.20632 1.01097 0.97098 1.07528 1.20673 0.95716 0.96450 0.98549 1.19780 1.01273 0.93670 1.04475 1.20444 0.94756 0.95683 0.88265 1.61821 1.17604 1.43221 1.02120 1.22057 0.91456 0.98676 0.94997 1.21859 1.00082 0.98207 0.94386 1.23080 0.92543 0.82994 0.95554 1.23133 1.02773 0.95834 0.82698 1.45912 1.56979 1.24825 1.11136 1.18850 0.78275 0.82440 0.81265 1.91006 1.51333 1.41804 1.62904 1.87317 1.70716 1.46753 1.19756 1.21817 0.95137 1.02857 0.94671 1.21890 0.97286 0.92992 0.94162 0.90948 0.88456 0.88111 0.87411 0.87891 0.96030 0.91684 0.95895 0.90311 0.87418 0.89023 0.86208 0.85636 0.70905 0.87926 0.89856 0.91921 0.96185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.81 10.90 21.83 0.24 -41.57 16 2 C 0.04 1.90 5.24 85.26 0.45 2.35 16 3 Si 0.97 36.22 29.57 68.60 2.03 38.25 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.28 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.45 -22.31 8.36 23.46 0.20 -22.11 16 8 H 0.07 3.55 6.64 -2.92 -0.02 3.53 16 9 C 0.11 5.36 5.54 -21.29 -0.12 5.24 16 10 C -0.19 -9.69 8.65 22.73 0.20 -9.50 16 11 C -0.12 -5.36 10.02 22.22 0.22 -5.13 16 12 C -0.24 -10.51 10.05 22.46 0.23 -10.29 16 13 C -0.10 -4.05 8.92 22.22 0.20 -3.85 16 14 C -0.19 -8.53 4.71 -19.41 -0.09 -8.62 16 15 C 0.14 5.23 4.46 85.55 0.38 5.61 16 16 N -0.52 -18.19 4.53 -900.46 -4.08 -22.26 16 17 C 0.06 1.61 5.37 86.36 0.46 2.07 16 18 C -0.11 -2.35 4.94 30.51 0.15 -2.20 16 19 C 0.10 2.04 0.92 -10.85 -0.01 2.03 16 20 C 0.08 1.03 7.34 86.46 0.63 1.66 16 21 N -0.72 -11.76 6.41 -590.51 -3.78 -15.54 16 22 C 0.64 17.53 9.16 129.90 1.19 18.72 16 23 O -0.58 -20.92 18.04 19.65 0.35 -20.57 16 24 O -0.34 -9.48 9.87 -48.73 -0.48 -9.96 16 25 C -0.11 -2.64 4.94 30.50 0.15 -2.49 16 26 C 0.06 2.11 5.23 86.36 0.45 2.56 16 27 H 0.28 12.96 8.30 -92.71 -0.77 12.19 16 28 H 0.10 5.29 6.29 -2.91 -0.02 5.27 16 29 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.10 3.90 8.00 -2.91 -0.02 3.87 16 32 H 0.02 0.79 7.88 -2.38 -0.02 0.78 16 33 H 0.06 2.55 6.72 -2.39 -0.02 2.53 16 34 H 0.02 0.69 7.95 -2.39 -0.02 0.67 16 35 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.12 1.10 7.71 -2.38 -0.02 1.08 16 39 H 0.13 1.00 7.71 -2.39 -0.02 0.98 16 40 H 0.45 4.93 8.96 -92.71 -0.83 4.10 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 2.32 6.71 -2.38 -0.02 2.31 16 44 H 0.02 0.67 7.95 -2.39 -0.02 0.66 16 Total: -1.00 -65.26 351.98 -0.84 -66.10 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.19 Total: 29.48 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.69 Total: -23.93 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -7.62 Total: -79.38 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.13 Total: -30.53 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -65.26 -0.84 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235530133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.735 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds