Wall clock time and date at job start Tue Mar 31 2020 11:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47025 * 240.00112 * 3 2 1 5 5 H 1.48495 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46719 * 120.00239 * 3 2 1 7 7 C 1.37876 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47232 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47117 * 304.99614 * 10 9 7 12 12 N 1.46494 * 109.47302 * 64.99671 * 10 9 7 13 13 C 1.34777 * 120.00188 * 205.00083 * 12 10 9 14 14 O 1.21342 * 119.99660 * 359.97438 * 13 12 10 15 15 C 1.49448 * 119.99799 * 180.02562 * 13 12 10 16 16 O 1.21349 * 120.00612 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99799 * 179.97438 * 15 13 12 18 18 C 1.47016 * 125.64747 * 359.68919 * 17 15 13 19 19 C 1.54321 * 107.27690 * 180.96823 * 18 17 15 20 20 C 1.55158 * 102.86144 * 22.52890 * 19 18 17 21 21 C 1.47425 * 125.64834 * 180.02562 * 17 15 13 22 22 C 1.50703 * 109.46987 * 185.00260 * 10 9 7 23 23 C 1.38235 * 120.00292 * 99.99885 * 22 10 9 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 10 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 279.97178 * 22 10 9 28 28 H 0.97001 * 120.00530 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47217 * 59.99672 * 9 7 2 30 30 H 1.08998 * 109.47302 * 300.00083 * 9 7 2 31 31 H 0.97005 * 119.99923 * 25.00414 * 12 10 9 32 32 H 1.09001 * 109.88751 * 300.51420 * 18 17 15 33 33 H 1.09004 * 109.88359 * 61.68073 * 18 17 15 34 34 H 1.08996 * 110.92505 * 264.11360 * 19 18 17 35 35 H 1.08994 * 110.59138 * 140.78862 * 19 18 17 36 36 H 1.09000 * 111.00102 * 206.22769 * 20 19 18 37 37 H 1.08997 * 111.00245 * 82.37645 * 20 19 18 38 38 H 1.09007 * 110.36536 * 274.67367 * 21 17 15 39 39 H 1.09000 * 110.36719 * 36.88373 * 21 17 15 40 40 H 1.08001 * 119.99730 * 359.97438 * 23 22 10 41 41 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 43 43 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00455 * 0.02562 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9294 -3.5545 -0.8445 12 7 3.0064 -3.6550 1.2490 13 6 4.2311 -4.2157 1.2962 14 8 4.7031 -4.7267 0.3020 15 6 5.0071 -4.2090 2.5734 16 8 4.5349 -3.6983 3.5678 17 7 6.2316 -4.7701 2.6207 18 6 6.9176 -5.4258 1.4979 19 6 8.2755 -5.9356 2.0251 20 6 8.0333 -6.0452 3.5537 21 6 7.1020 -4.8341 3.8089 22 6 1.4959 -4.9635 -0.1278 23 6 1.4100 -5.5967 -1.3536 24 6 0.7231 -6.7908 -1.4681 25 6 0.1226 -7.3521 -0.3567 26 6 0.2096 -6.7196 0.8694 27 6 0.8947 -5.5244 0.9835 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8920 30 1 0.6240 -2.5575 0.8880 31 1 2.6288 -3.2469 2.0439 32 1 6.3204 -6.2629 1.1364 33 1 7.0802 -4.7089 0.6931 34 1 9.0696 -5.2205 1.8107 35 1 8.5094 -6.9119 1.6007 36 1 8.9677 -5.9429 4.1056 37 1 7.5340 -6.9812 3.8040 38 1 7.6868 -3.9188 3.9005 39 1 6.5062 -4.9943 4.7075 40 1 1.8798 -5.1585 -2.2218 41 1 0.6556 -7.2853 -2.4258 42 1 -0.4179 -8.2828 -0.4470 43 1 -0.2598 -7.1579 1.7377 44 1 0.9617 -5.0297 1.9412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321354615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:03 Heat of formation + Delta-G solvation = -46.653919 kcal Electronic energy + Delta-G solvation = -26473.453150 eV Core-core repulsion = 22776.395932 eV Total energy + Delta-G solvation = -3697.057218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54044 -39.25124 -38.17174 -37.33644 -35.33351 -32.76485 -31.72345 -31.13956 -30.48425 -29.21284 -28.85195 -25.77449 -24.56170 -22.44110 -22.26401 -21.92350 -21.34050 -19.90511 -19.53665 -17.62463 -16.91453 -16.71316 -16.41941 -16.16225 -15.42246 -15.19968 -14.76374 -14.55577 -14.33687 -13.81310 -13.73867 -13.49413 -13.35059 -13.06121 -12.96850 -12.68065 -12.55568 -12.40341 -12.11610 -11.73284 -11.56030 -11.42798 -11.15323 -11.06452 -10.97352 -10.93205 -10.72553 -10.64374 -10.46009 -9.81268 -9.36591 -9.18214 -8.79569 -8.59997 -8.52532 -8.44495 -8.22936 -6.08249 -4.12121 1.71783 1.77069 1.78190 2.55170 3.31234 3.35489 3.38779 3.56372 3.77701 4.18267 4.37603 4.41261 4.43846 4.69786 4.86576 5.13189 5.16784 5.23340 5.24999 5.28805 5.33981 5.47569 5.50460 5.51765 5.63275 5.76796 5.81815 5.87356 5.89982 5.96030 6.08531 6.16029 6.30619 6.38762 6.51163 6.71872 6.81529 6.82621 7.04363 7.22853 7.36812 7.46777 7.51841 7.72714 7.87175 8.07600 8.23937 8.46585 8.92534 9.53156 11.02214 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.005122 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.783865 B = 5465.580820 C = 7920.985164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.183 3.817 11 H 0.092 0.908 12 N -0.666 5.666 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.521 3.479 16 O -0.520 6.520 17 N -0.597 5.597 18 C 0.108 3.892 19 C -0.136 4.136 20 C -0.133 4.133 21 C 0.103 3.897 22 C -0.075 4.075 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.027 0.973 31 H 0.413 0.587 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.001 -14.956 3.790 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.080 3.920 11 H 0.110 0.890 12 N -0.316 5.316 13 C 0.285 3.715 14 O -0.406 6.406 15 C 0.305 3.695 16 O -0.396 6.396 17 N -0.333 5.333 18 C -0.014 4.014 19 C -0.174 4.174 20 C -0.172 4.172 21 C -0.019 4.019 22 C -0.076 4.076 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.250 0.750 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.813 -14.852 3.599 18.720 hybrid contribution 0.210 1.194 0.355 1.264 sum 11.023 -13.658 3.954 17.991 Atomic orbital electron populations 1.69940 1.06009 1.26989 1.50017 1.24963 0.94802 0.99223 0.94960 0.86650 0.79614 0.83019 0.78738 1.20198 1.21237 1.20165 1.21069 0.93004 0.90397 1.51693 0.92498 1.19416 0.93157 0.89916 0.98884 1.20416 0.93491 0.92509 0.85608 0.89049 1.45844 1.15459 1.55066 1.15215 1.19814 0.83081 0.80402 0.88178 1.90692 1.69159 1.44975 1.35763 1.20173 0.80936 0.78894 0.89529 1.90758 1.68478 1.43933 1.36419 1.48258 1.15752 1.56236 1.13068 1.22160 0.92316 0.98125 0.88833 1.22738 0.96930 1.02198 0.95527 1.22790 0.99694 0.98194 0.96475 1.22317 0.92134 0.98565 0.88891 1.20482 0.97218 0.96338 0.93525 1.21001 0.99139 0.95039 0.97287 1.21039 0.98593 0.96162 0.98295 1.21013 1.00885 1.00045 0.93180 1.21054 0.99821 0.95903 0.97429 1.20965 0.97449 0.95608 0.98587 0.92757 0.94372 0.95473 0.75018 0.90313 0.90315 0.90491 0.89886 0.89678 0.90495 0.91022 0.90087 0.86062 0.86529 0.86773 0.86641 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.06 8.84 -34.44 -0.30 -14.36 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 10 C 0.18 3.74 2.12 -69.08 -0.15 3.59 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 N -0.67 -12.91 4.02 -55.37 -0.22 -13.13 16 13 C 0.51 9.44 7.81 -11.59 -0.09 9.35 16 14 O -0.53 -10.25 13.79 5.50 0.08 -10.17 16 15 C 0.52 9.05 7.91 -11.59 -0.09 8.96 16 16 O -0.52 -10.05 16.73 5.50 0.09 -9.95 16 17 N -0.60 -8.34 3.33 -171.04 -0.57 -8.91 16 18 C 0.11 1.28 5.48 -3.07 -0.02 1.26 16 19 C -0.14 -1.07 6.95 -24.90 -0.17 -1.24 16 20 C -0.13 -1.00 7.08 -24.59 -0.17 -1.17 16 21 C 0.10 1.10 6.91 -2.54 -0.02 1.08 16 22 C -0.07 -1.37 4.91 -104.62 -0.51 -1.89 16 23 C -0.11 -1.79 9.67 -39.59 -0.38 -2.17 16 24 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.41 8.04 8.07 -40.82 -0.33 7.71 16 32 H 0.08 0.99 7.59 -51.93 -0.39 0.60 16 33 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 40 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.97 7.72 -52.49 -0.41 1.56 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -31.45 370.92 -9.54 -40.99 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.52 Total: 7.67 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -3.70 Total: -3.43 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.06 Total: -47.11 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.17 Total: -20.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.45 -9.54 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321354615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.666 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds