Wall clock time and date at job start Tue Mar 31 2020 11:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47025 * 240.00112 * 3 2 1 5 5 H 1.48495 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46719 * 120.00239 * 3 2 1 7 7 C 1.37876 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47232 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47117 * 304.99614 * 10 9 7 12 12 N 1.46494 * 109.47302 * 64.99671 * 10 9 7 13 13 C 1.34777 * 120.00188 * 205.00083 * 12 10 9 14 14 O 1.21342 * 119.99660 * 359.97438 * 13 12 10 15 15 C 1.49448 * 119.99799 * 180.02562 * 13 12 10 16 16 O 1.21349 * 120.00612 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99799 * 179.97438 * 15 13 12 18 18 C 1.47016 * 125.64747 * 359.68919 * 17 15 13 19 19 C 1.54321 * 107.27690 * 180.96823 * 18 17 15 20 20 C 1.55158 * 102.86144 * 22.52890 * 19 18 17 21 21 C 1.47425 * 125.64834 * 180.02562 * 17 15 13 22 22 C 1.50703 * 109.46987 * 185.00260 * 10 9 7 23 23 C 1.38235 * 120.00292 * 99.99885 * 22 10 9 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 10 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 279.97178 * 22 10 9 28 28 H 0.97001 * 120.00530 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47217 * 59.99672 * 9 7 2 30 30 H 1.08998 * 109.47302 * 300.00083 * 9 7 2 31 31 H 0.97005 * 119.99923 * 25.00414 * 12 10 9 32 32 H 1.09001 * 109.88751 * 300.51420 * 18 17 15 33 33 H 1.09004 * 109.88359 * 61.68073 * 18 17 15 34 34 H 1.08996 * 110.92505 * 264.11360 * 19 18 17 35 35 H 1.08994 * 110.59138 * 140.78862 * 19 18 17 36 36 H 1.09000 * 111.00102 * 206.22769 * 20 19 18 37 37 H 1.08997 * 111.00245 * 82.37645 * 20 19 18 38 38 H 1.09007 * 110.36536 * 274.67367 * 21 17 15 39 39 H 1.09000 * 110.36719 * 36.88373 * 21 17 15 40 40 H 1.08001 * 119.99730 * 359.97438 * 23 22 10 41 41 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 43 43 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00455 * 0.02562 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9294 -3.5545 -0.8445 12 7 3.0064 -3.6550 1.2490 13 6 4.2311 -4.2157 1.2962 14 8 4.7031 -4.7267 0.3020 15 6 5.0071 -4.2090 2.5734 16 8 4.5349 -3.6983 3.5678 17 7 6.2316 -4.7701 2.6207 18 6 6.9176 -5.4258 1.4979 19 6 8.2755 -5.9356 2.0251 20 6 8.0333 -6.0452 3.5537 21 6 7.1020 -4.8341 3.8089 22 6 1.4959 -4.9635 -0.1278 23 6 1.4100 -5.5967 -1.3536 24 6 0.7231 -6.7908 -1.4681 25 6 0.1226 -7.3521 -0.3567 26 6 0.2096 -6.7196 0.8694 27 6 0.8947 -5.5244 0.9835 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8920 30 1 0.6240 -2.5575 0.8880 31 1 2.6288 -3.2469 2.0439 32 1 6.3204 -6.2629 1.1364 33 1 7.0802 -4.7089 0.6931 34 1 9.0696 -5.2205 1.8107 35 1 8.5094 -6.9119 1.6007 36 1 8.9677 -5.9429 4.1056 37 1 7.5340 -6.9812 3.8040 38 1 7.6868 -3.9188 3.9005 39 1 6.5062 -4.9943 4.7075 40 1 1.8798 -5.1585 -2.2218 41 1 0.6556 -7.2853 -2.4258 42 1 -0.4179 -8.2828 -0.4470 43 1 -0.2598 -7.1579 1.7377 44 1 0.9617 -5.0297 1.9412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321354615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:02 Heat of formation + Delta-G solvation = -65.384243 kcal Electronic energy + Delta-G solvation = -26474.265358 eV Core-core repulsion = 22776.395932 eV Total energy + Delta-G solvation = -3697.869426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90183 -40.54152 -39.44688 -38.55014 -36.92937 -34.78968 -32.75208 -32.58522 -31.71932 -30.60265 -30.06726 -27.35359 -26.04846 -23.89907 -23.64709 -23.19220 -22.11890 -21.37050 -20.88886 -18.97480 -18.56189 -18.14481 -17.70522 -17.53782 -16.88045 -16.57494 -16.40214 -16.02448 -15.65014 -15.07470 -14.96108 -14.58597 -14.49097 -14.28024 -14.21460 -14.08692 -13.98573 -13.71785 -13.51454 -13.38951 -12.97668 -12.79857 -12.66150 -12.47166 -12.20264 -12.16851 -12.08185 -11.90247 -11.65285 -11.60430 -11.39929 -10.70521 -10.56563 -10.22337 -9.86885 -9.77948 -9.56469 -8.23085 -6.33542 0.32612 0.46787 0.53742 1.27565 1.37721 1.39219 1.47107 2.11628 2.37582 2.48669 2.93840 3.10775 3.32970 3.64278 3.71213 3.91777 3.99667 4.05260 4.18859 4.28864 4.30562 4.36201 4.44894 4.59040 4.63999 4.71088 4.75326 4.85949 4.90056 4.96400 5.04774 5.09587 5.12379 5.16713 5.18360 5.33770 5.37099 5.50433 5.59003 5.62436 5.73517 5.77758 6.01465 6.11752 6.16699 6.26054 6.64021 6.77918 6.94898 7.35232 8.87491 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.005122 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.783865 B = 5465.580820 C = 7920.985164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.037 3.963 10 C 0.199 3.801 11 H 0.074 0.926 12 N -0.669 5.669 13 C 0.504 3.496 14 O -0.539 6.539 15 C 0.517 3.483 16 O -0.549 6.549 17 N -0.591 5.591 18 C 0.100 3.900 19 C -0.124 4.124 20 C -0.120 4.120 21 C 0.091 3.909 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.126 4.126 28 H 0.265 0.735 29 H 0.014 0.986 30 H 0.008 0.992 31 H 0.411 0.589 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 -16.905 4.055 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.070 0.930 9 C -0.001 4.001 10 C 0.095 3.905 11 H 0.092 0.908 12 N -0.319 5.319 13 C 0.284 3.716 14 O -0.417 6.417 15 C 0.300 3.700 16 O -0.428 6.428 17 N -0.325 5.325 18 C -0.022 4.022 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.029 4.029 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.144 4.144 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.468 -16.831 3.856 21.298 hybrid contribution -0.279 1.705 0.243 1.744 sum 12.190 -15.126 4.099 19.854 Atomic orbital electron populations 1.70050 1.07400 1.27884 1.51009 1.25759 0.95607 1.02635 0.94633 0.85661 0.78467 0.79023 0.78883 1.19468 1.20507 1.19825 1.21358 0.92936 0.91727 1.51208 0.92989 1.19153 0.93288 0.90931 0.96703 1.19957 0.92382 0.92640 0.85477 0.90804 1.45783 1.15960 1.55478 1.14629 1.20136 0.82724 0.79852 0.88879 1.90671 1.69289 1.45331 1.36384 1.19855 0.82086 0.79644 0.88410 1.90735 1.69490 1.45757 1.36787 1.48455 1.14711 1.54271 1.15058 1.22340 0.94390 0.97248 0.88211 1.22744 0.94372 1.03457 0.95607 1.22808 1.00092 0.96551 0.96319 1.22671 0.92146 1.00822 0.87307 1.20346 0.98794 0.96011 0.95008 1.21180 1.00179 0.96367 0.96637 1.21420 0.97208 0.95006 1.00143 1.21488 0.99695 1.00901 0.92200 1.21408 0.98902 0.94832 0.99160 1.21053 0.98490 0.96950 0.97933 0.92614 0.96770 0.97328 0.75330 0.91335 0.91770 0.89115 0.87729 0.86570 0.90060 0.90112 0.90648 0.86137 0.83346 0.82915 0.83911 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.29 21.45 0.28 -54.74 16 2 C 0.01 0.72 5.46 84.66 0.46 1.18 16 3 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.53 -29.89 8.84 25.60 0.23 -29.66 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 1.89 4.49 29.85 0.13 2.02 16 10 C 0.20 8.66 2.12 44.25 0.09 8.76 16 11 H 0.07 3.40 7.44 -2.39 -0.02 3.39 16 12 N -0.67 -27.56 4.02 -447.45 -1.80 -29.36 16 13 C 0.50 19.68 7.81 87.27 0.68 20.36 16 14 O -0.54 -21.71 13.79 -3.22 -0.04 -21.75 16 15 C 0.52 18.51 7.91 87.27 0.69 19.20 16 16 O -0.55 -21.95 16.73 -3.24 -0.05 -22.00 16 17 N -0.59 -16.38 3.33 -813.41 -2.71 -19.09 16 18 C 0.10 2.29 5.48 86.73 0.48 2.77 16 19 C -0.12 -1.59 6.95 31.78 0.22 -1.36 16 20 C -0.12 -1.40 7.08 31.98 0.23 -1.17 16 21 C 0.09 1.81 6.91 86.85 0.60 2.41 16 22 C -0.10 -3.86 4.91 -19.87 -0.10 -3.96 16 23 C -0.13 -4.27 9.67 22.27 0.22 -4.06 16 24 C -0.12 -3.27 10.05 22.27 0.22 -3.04 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 27 C -0.13 -4.42 9.32 22.27 0.21 -4.21 16 28 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.01 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.41 17.18 8.07 -92.70 -0.75 16.43 16 32 H 0.07 1.71 7.59 -2.39 -0.02 1.70 16 33 H 0.06 1.66 7.68 -2.38 -0.02 1.64 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 40 H 0.12 3.98 8.04 -2.91 -0.02 3.96 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.11 3.90 7.72 -2.91 -0.02 3.88 16 Total: -1.00 -70.79 370.92 2.77 -68.02 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.25 Total: 29.17 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.81 Total: 3.03 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.22 Total: -103.19 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.10 Total: -43.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.79 2.77 -68.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321354615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.636 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds