Wall clock time and date at job start Tue Mar 31 2020 11:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99954 * 3 2 1 5 5 H 1.48497 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99969 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47512 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00210 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99610 * 0.02562 * 12 11 10 14 14 C 1.49448 * 119.99767 * 179.97438 * 12 11 10 15 15 O 1.21341 * 120.00524 * 359.72844 * 14 12 11 16 16 N 1.34784 * 119.99762 * 179.97438 * 14 12 11 17 17 C 1.46499 * 119.99893 * 179.72897 * 16 14 12 18 18 H 1.08990 * 109.47400 * 34.99963 * 17 16 14 19 19 C 1.50705 * 109.46758 * 155.00127 * 17 16 14 20 20 C 1.38231 * 120.00020 * 39.72483 * 19 17 16 21 21 C 1.38241 * 119.99625 * 179.76255 * 20 19 17 22 22 C 1.38233 * 120.00182 * 0.51081 * 21 20 19 23 23 C 1.38233 * 119.99667 * 359.73971 * 22 21 20 24 24 C 1.38234 * 119.99657 * 219.99220 * 19 17 16 25 25 C 1.52998 * 109.46843 * 274.99901 * 17 16 14 26 26 C 1.52999 * 117.49932 * 128.62747 * 25 17 16 27 27 C 1.52992 * 117.50101 * 60.00107 * 25 17 16 28 28 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47424 * 59.99659 * 9 7 2 30 30 H 1.09006 * 109.47179 * 300.00003 * 9 7 2 31 31 H 1.08998 * 109.47065 * 59.99426 * 10 9 7 32 32 H 1.09001 * 109.46892 * 299.99690 * 10 9 7 33 33 H 0.97004 * 119.99753 * 359.97438 * 11 10 9 34 34 H 0.97005 * 119.99846 * 359.72685 * 16 14 12 35 35 H 1.07998 * 120.00414 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.99762 * 180.22818 * 21 20 19 37 37 H 1.07991 * 120.00275 * 179.72529 * 22 21 20 38 38 H 1.08001 * 120.00191 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.99982 * 0.02562 * 24 19 17 40 40 H 1.09007 * 115.54811 * 274.32962 * 25 17 16 41 41 H 1.09004 * 117.49862 * 359.97438 * 26 25 17 42 42 H 1.09001 * 117.50328 * 145.02210 * 26 25 17 43 43 H 1.09001 * 117.50221 * 214.97634 * 27 25 17 44 44 H 1.09005 * 117.50164 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0016 13 8 3.4003 -6.0979 0.0030 14 6 1.4395 -7.3922 0.0016 15 8 0.2261 -7.3923 0.0061 16 7 2.1135 -8.5595 0.0015 17 6 1.3810 -9.8282 0.0074 18 1 0.4679 -9.7233 -0.5784 19 6 2.2426 -10.9084 -0.5942 20 6 3.5950 -10.9515 -0.3113 21 6 4.3843 -11.9453 -0.8592 22 6 3.8233 -12.8898 -1.6984 23 6 2.4718 -12.8435 -1.9853 24 6 1.6814 -11.8529 -1.4332 25 6 1.0231 -10.2036 1.4468 26 6 -0.4364 -10.5538 1.7435 27 6 0.1472 -9.2274 2.2346 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8714 -3.6039 0.8922 32 1 2.8727 -3.6047 -0.8877 33 1 0.5429 -4.9308 0.0005 34 1 3.0835 -8.5594 -0.0026 35 1 4.0342 -10.2108 0.3404 36 1 5.4402 -11.9812 -0.6353 37 1 4.4407 -13.6635 -2.1299 38 1 2.0335 -13.5811 -2.6412 39 1 0.6256 -11.8164 -1.6579 40 1 1.7928 -10.7455 1.9965 41 1 -1.1418 -10.5162 0.9133 42 1 -0.6273 -11.3262 2.4885 43 1 0.3403 -9.1273 3.3027 44 1 -0.1738 -8.3174 1.7276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340141051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:02 Heat of formation + Delta-G solvation = -27.943203 kcal Electronic energy + Delta-G solvation = -25290.046612 eV Core-core repulsion = 21593.800751 eV Total energy + Delta-G solvation = -3696.245861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87112 -39.64924 -38.44156 -37.16558 -35.31179 -34.45899 -32.86401 -31.67236 -31.19459 -29.82097 -27.31155 -25.42806 -23.59605 -22.95769 -22.47311 -22.16756 -21.07173 -20.46134 -20.14375 -18.49449 -17.08159 -16.99838 -16.42574 -16.14839 -15.72679 -15.56937 -15.18595 -14.82680 -14.77668 -14.53368 -14.40067 -13.75944 -13.67891 -13.48732 -13.06808 -12.91121 -12.80158 -12.32249 -12.16654 -11.68098 -11.61512 -11.39727 -11.34732 -11.22835 -11.04953 -10.68830 -10.54053 -10.43871 -10.39356 -9.80124 -9.47446 -9.36944 -9.26801 -9.19818 -9.04861 -8.70008 -8.41799 -6.10279 -4.14063 0.94075 1.05410 1.58660 2.48473 3.30472 3.34680 3.37193 3.38004 3.43502 3.61206 3.94948 4.18407 4.40064 4.51245 4.60891 4.68680 4.73362 4.77114 4.84200 4.90604 5.01343 5.14421 5.20097 5.26490 5.40545 5.52001 5.60026 5.67182 5.78940 5.93882 6.00829 6.09604 6.15225 6.17118 6.18578 6.23432 6.31418 6.59026 6.62357 6.68886 7.04864 7.46073 7.57476 7.65739 7.86800 7.91909 8.20810 8.33516 8.91278 9.50797 11.01140 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002339 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.398628 B =11966.723340 C =12717.050596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.685 5.685 12 C 0.497 3.503 13 O -0.533 6.533 14 C 0.512 3.488 15 O -0.517 6.517 16 N -0.697 5.697 17 C 0.216 3.784 18 H 0.101 0.899 19 C -0.087 4.087 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.169 4.169 26 C -0.167 4.167 27 C -0.180 4.180 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -27.849 -0.332 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.411 6.411 14 C 0.294 3.706 15 O -0.393 6.393 16 N -0.350 5.350 17 C 0.112 3.888 18 H 0.119 0.881 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.189 4.189 26 C -0.204 4.204 27 C -0.217 4.217 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.249 0.751 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.106 -27.671 -0.335 27.847 hybrid contribution 0.484 0.848 0.054 0.978 sum 3.590 -26.824 -0.281 27.064 Atomic orbital electron populations 1.69949 1.06089 1.27068 1.49961 1.25001 0.94905 0.99433 0.94924 0.86554 0.79495 0.82605 0.78763 1.20105 1.21231 1.20094 1.20972 0.93182 0.90258 1.51863 0.92226 1.19348 0.94173 0.90843 0.98232 1.21936 0.96280 0.80751 1.01329 1.46226 1.11771 1.05758 1.69851 1.19948 0.87721 0.85219 0.79450 1.90730 1.13240 1.87513 1.49626 1.20442 0.87789 0.85514 0.76866 1.90685 1.13403 1.87547 1.47674 1.45893 1.11334 1.04352 1.73470 1.19402 0.94569 0.80480 0.94380 0.88128 1.19783 0.94154 0.96758 0.98109 1.20994 0.93226 0.98729 1.00050 1.21156 0.99974 0.94852 0.97366 1.21205 0.95287 0.98986 0.98245 1.21148 0.94035 0.98501 0.99882 1.20994 1.00116 0.94650 0.96420 1.22620 0.94814 1.05569 0.95852 1.22921 0.94600 0.99317 1.03572 1.23322 1.02779 0.95533 1.00065 0.92711 0.95673 0.95667 0.91857 0.91882 0.75383 0.75101 0.85857 0.85770 0.86000 0.85829 0.85721 0.87592 0.88567 0.88825 0.89100 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.44 16 11 N -0.69 -12.34 5.55 -60.73 -0.34 -12.68 16 12 C 0.50 8.48 7.89 -11.59 -0.09 8.39 16 13 O -0.53 -10.04 16.48 5.50 0.09 -9.95 16 14 C 0.51 7.47 7.22 -11.58 -0.08 7.39 16 15 O -0.52 -8.14 13.51 5.50 0.07 -8.07 16 16 N -0.70 -8.18 5.00 -55.37 -0.28 -8.45 16 17 C 0.22 2.18 2.48 -69.08 -0.17 2.01 16 18 H 0.10 1.10 7.20 -51.93 -0.37 0.73 16 19 C -0.09 -0.79 4.93 -104.62 -0.52 -1.30 16 20 C -0.11 -0.94 9.06 -39.58 -0.36 -1.30 16 21 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 22 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.10 -0.84 9.67 -39.58 -0.38 -1.22 16 25 C -0.17 -1.63 5.34 -90.63 -0.48 -2.11 16 26 C -0.17 -1.51 10.18 -26.73 -0.27 -1.78 16 27 C -0.18 -1.97 9.73 -26.73 -0.26 -2.23 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.41 7.01 7.95 -40.82 -0.32 6.69 16 34 H 0.41 4.53 6.33 -40.82 -0.26 4.27 16 35 H 0.12 0.95 6.90 -52.49 -0.36 0.59 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.85 8.04 -52.48 -0.42 0.42 16 40 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.12 1.59 5.02 -51.93 -0.26 1.33 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -30.85 373.24 -9.68 -40.53 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.19 Total: 8.56 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.39 Total: -6.46 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.12 Total: -46.46 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.16 Total: -18.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.85 -9.68 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340141051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.587 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds