Wall clock time and date at job start Tue Mar 31 2020 11:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99954 * 3 2 1 5 5 H 1.48497 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99969 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47512 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00210 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99610 * 0.02562 * 12 11 10 14 14 C 1.49448 * 119.99767 * 179.97438 * 12 11 10 15 15 O 1.21341 * 120.00524 * 359.72844 * 14 12 11 16 16 N 1.34784 * 119.99762 * 179.97438 * 14 12 11 17 17 C 1.46499 * 119.99893 * 179.72897 * 16 14 12 18 18 H 1.08990 * 109.47400 * 34.99963 * 17 16 14 19 19 C 1.50705 * 109.46758 * 155.00127 * 17 16 14 20 20 C 1.38231 * 120.00020 * 39.72483 * 19 17 16 21 21 C 1.38241 * 119.99625 * 179.76255 * 20 19 17 22 22 C 1.38233 * 120.00182 * 0.51081 * 21 20 19 23 23 C 1.38233 * 119.99667 * 359.73971 * 22 21 20 24 24 C 1.38234 * 119.99657 * 219.99220 * 19 17 16 25 25 C 1.52998 * 109.46843 * 274.99901 * 17 16 14 26 26 C 1.52999 * 117.49932 * 128.62747 * 25 17 16 27 27 C 1.52992 * 117.50101 * 60.00107 * 25 17 16 28 28 H 0.97001 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47424 * 59.99659 * 9 7 2 30 30 H 1.09006 * 109.47179 * 300.00003 * 9 7 2 31 31 H 1.08998 * 109.47065 * 59.99426 * 10 9 7 32 32 H 1.09001 * 109.46892 * 299.99690 * 10 9 7 33 33 H 0.97004 * 119.99753 * 359.97438 * 11 10 9 34 34 H 0.97005 * 119.99846 * 359.72685 * 16 14 12 35 35 H 1.07998 * 120.00414 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.99762 * 180.22818 * 21 20 19 37 37 H 1.07991 * 120.00275 * 179.72529 * 22 21 20 38 38 H 1.08001 * 120.00191 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.99982 * 0.02562 * 24 19 17 40 40 H 1.09007 * 115.54811 * 274.32962 * 25 17 16 41 41 H 1.09004 * 117.49862 * 359.97438 * 26 25 17 42 42 H 1.09001 * 117.50328 * 145.02210 * 26 25 17 43 43 H 1.09001 * 117.50221 * 214.97634 * 27 25 17 44 44 H 1.09005 * 117.50164 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0016 13 8 3.4003 -6.0979 0.0030 14 6 1.4395 -7.3922 0.0016 15 8 0.2261 -7.3923 0.0061 16 7 2.1135 -8.5595 0.0015 17 6 1.3810 -9.8282 0.0074 18 1 0.4679 -9.7233 -0.5784 19 6 2.2426 -10.9084 -0.5942 20 6 3.5950 -10.9515 -0.3113 21 6 4.3843 -11.9453 -0.8592 22 6 3.8233 -12.8898 -1.6984 23 6 2.4718 -12.8435 -1.9853 24 6 1.6814 -11.8529 -1.4332 25 6 1.0231 -10.2036 1.4468 26 6 -0.4364 -10.5538 1.7435 27 6 0.1472 -9.2274 2.2346 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8714 -3.6039 0.8922 32 1 2.8727 -3.6047 -0.8877 33 1 0.5429 -4.9308 0.0005 34 1 3.0835 -8.5594 -0.0026 35 1 4.0342 -10.2108 0.3404 36 1 5.4402 -11.9812 -0.6353 37 1 4.4407 -13.6635 -2.1299 38 1 2.0335 -13.5811 -2.6412 39 1 0.6256 -11.8164 -1.6579 40 1 1.7928 -10.7455 1.9965 41 1 -1.1418 -10.5162 0.9133 42 1 -0.6273 -11.3262 2.4885 43 1 0.3403 -9.1273 3.3027 44 1 -0.1738 -8.3174 1.7276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340141051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:01 Heat of formation + Delta-G solvation = -46.562833 kcal Electronic energy + Delta-G solvation = -25290.854020 eV Core-core repulsion = 21593.800751 eV Total energy + Delta-G solvation = -3697.053268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98084 -40.59046 -39.54362 -38.07087 -36.87444 -35.57014 -34.79362 -32.40889 -31.77695 -31.69643 -28.28101 -27.08165 -25.00743 -23.66892 -23.23703 -22.88137 -22.79327 -21.56005 -21.14951 -19.71624 -18.59762 -17.99635 -17.78874 -17.30318 -16.85672 -16.54385 -16.43216 -16.19848 -16.04169 -15.62048 -15.38318 -15.03325 -14.80794 -14.30827 -14.27301 -14.23664 -13.69674 -13.57072 -13.27180 -13.01404 -12.93312 -12.82184 -12.55113 -12.33777 -12.27494 -12.16097 -11.93323 -11.68938 -11.46700 -11.33831 -11.21948 -10.68866 -10.61267 -10.34109 -10.21005 -9.83389 -9.69294 -8.23562 -6.34919 0.27807 0.35092 0.48642 1.28907 1.43379 1.45391 1.53537 2.09150 2.38737 2.55624 2.86086 2.95866 3.11273 3.41534 3.44200 3.83768 3.92504 4.09315 4.10043 4.14366 4.22635 4.32229 4.38029 4.44290 4.51733 4.61150 4.73442 4.78878 4.80375 4.96709 5.03151 5.04530 5.06863 5.14876 5.20805 5.32002 5.41557 5.54248 5.54338 5.61423 5.62406 5.75093 5.91330 6.08001 6.12563 6.33202 6.68270 6.78970 6.90984 7.34580 8.88227 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002339 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.398628 B =11966.723340 C =12717.050596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.138 3.862 11 N -0.687 5.687 12 C 0.500 3.500 13 O -0.549 6.549 14 C 0.519 3.481 15 O -0.530 6.530 16 N -0.681 5.681 17 C 0.218 3.782 18 H 0.092 0.908 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.164 4.164 26 C -0.152 4.152 27 C -0.199 4.199 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.415 0.585 34 H 0.416 0.584 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 -29.433 -0.561 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.015 3.985 11 N -0.338 5.338 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.299 3.701 15 O -0.407 6.407 16 N -0.335 5.335 17 C 0.115 3.885 18 H 0.110 0.890 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.183 4.183 26 C -0.190 4.190 27 C -0.236 4.236 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.251 0.749 34 H 0.255 0.745 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.292 -29.299 -0.565 29.617 hybrid contribution 0.128 1.233 0.107 1.244 sum 4.420 -28.066 -0.458 28.416 Atomic orbital electron populations 1.70070 1.07689 1.28101 1.50872 1.25922 0.95785 1.03286 0.94408 0.85460 0.78225 0.77909 0.79224 1.19189 1.20852 1.19164 1.21420 0.93752 0.91563 1.51685 0.91711 1.19166 0.94319 0.91889 0.96440 1.21479 0.95102 0.80781 1.01116 1.46054 1.11906 1.05396 1.70462 1.20337 0.87574 0.85740 0.78328 1.90715 1.14040 1.87899 1.50160 1.19903 0.87367 0.85274 0.77531 1.90696 1.13728 1.87545 1.48737 1.45886 1.11617 1.04144 1.71811 1.19471 0.94330 0.79851 0.94846 0.89002 1.19706 0.94301 0.96869 0.99138 1.21118 0.93205 0.99333 1.00516 1.21422 1.00825 0.94608 0.97240 1.21542 0.95578 0.99163 0.97671 1.21447 0.94195 0.98529 0.99792 1.21193 1.00870 0.94771 0.96311 1.22629 0.95500 1.04930 0.95257 1.23000 0.94011 0.98304 1.03640 1.23239 1.04687 0.95449 1.00269 0.92558 0.97429 0.97408 0.92022 0.92075 0.74885 0.74550 0.85640 0.84169 0.83849 0.83783 0.84854 0.86645 0.88501 0.86964 0.88629 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.55 -30.20 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.14 5.81 5.61 86.38 0.48 6.30 16 11 N -0.69 -25.14 5.55 -464.42 -2.58 -27.71 16 12 C 0.50 17.09 7.89 87.27 0.69 17.78 16 13 O -0.55 -20.56 16.48 -3.24 -0.05 -20.62 16 14 C 0.52 15.15 7.22 87.27 0.63 15.78 16 15 O -0.53 -16.88 13.51 -3.22 -0.04 -16.92 16 16 N -0.68 -15.72 5.00 -447.44 -2.24 -17.95 16 17 C 0.22 4.25 2.48 44.25 0.11 4.36 16 18 H 0.09 1.97 7.20 -2.39 -0.02 1.96 16 19 C -0.10 -1.67 4.93 -19.87 -0.10 -1.77 16 20 C -0.12 -1.92 9.06 22.27 0.20 -1.72 16 21 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 22 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 23 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 24 C -0.11 -1.66 9.67 22.27 0.22 -1.44 16 25 C -0.16 -2.99 5.34 -10.80 -0.06 -3.05 16 26 C -0.15 -2.55 10.18 30.59 0.31 -2.24 16 27 C -0.20 -4.30 9.73 30.59 0.30 -4.01 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.41 14.56 7.95 -92.71 -0.74 13.82 16 34 H 0.42 8.91 6.33 -92.70 -0.59 8.32 16 35 H 0.13 1.80 6.90 -2.91 -0.02 1.78 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.14 1.00 8.06 -2.92 -0.02 0.98 16 38 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 40 H 0.12 1.90 8.11 -2.38 -0.02 1.88 16 41 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.55 5.02 -2.38 -0.01 2.54 16 Total: -1.00 -65.57 373.24 1.41 -64.16 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.29 Total: 30.20 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.30 Total: -1.94 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.53 Total: -100.31 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.57 1.41 -64.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340141051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.599 kcal (2) G-P(sol) polarization free energy of solvation -65.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds