Wall clock time and date at job start Tue Mar 31 2020 11:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48495 * 109.47320 * 270.00309 * 3 2 1 5 5 H 1.48504 * 109.46894 * 30.00436 * 3 2 1 6 6 H 1.48500 * 109.47189 * 150.00198 * 3 2 1 7 7 C 1.37878 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00241 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47285 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00479 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.49441 * 120.00215 * 180.02562 * 12 11 10 15 15 O 1.21344 * 120.00200 * 359.97438 * 14 12 11 16 16 N 1.34779 * 119.99860 * 179.97438 * 14 12 11 17 17 C 1.46503 * 120.00178 * 180.02562 * 16 14 12 18 18 H 1.09003 * 109.46989 * 324.99774 * 17 16 14 19 19 C 1.50702 * 109.47322 * 205.00445 * 17 16 14 20 20 C 1.38234 * 120.00257 * 140.00015 * 19 17 16 21 21 C 1.38238 * 119.99675 * 180.25732 * 20 19 17 22 22 C 1.38228 * 120.00114 * 359.50218 * 21 20 19 23 23 C 1.38234 * 120.00051 * 0.47390 * 22 21 20 24 24 C 1.38235 * 119.99522 * 319.97028 * 19 17 16 25 25 C 1.52995 * 109.47530 * 84.99848 * 17 16 14 26 26 C 1.53003 * 117.49672 * 8.62385 * 25 17 16 27 27 C 1.53005 * 60.00213 * 252.51367 * 26 25 17 28 28 H 0.96999 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 59.99562 * 9 7 2 30 30 H 1.09004 * 109.46978 * 300.00127 * 9 7 2 31 31 H 1.08999 * 109.47074 * 59.99625 * 10 9 7 32 32 H 1.08997 * 109.47127 * 299.99773 * 10 9 7 33 33 H 0.97006 * 119.99712 * 0.02562 * 11 10 9 34 34 H 0.96994 * 120.00504 * 359.97438 * 16 14 12 35 35 H 1.08002 * 119.99744 * 359.97115 * 20 19 17 36 36 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 37 37 H 1.07999 * 119.99927 * 180.26554 * 22 21 20 38 38 H 1.08001 * 120.00294 * 179.78842 * 23 22 21 39 39 H 1.07996 * 120.00471 * 0.02562 * 24 19 17 40 40 H 1.08997 * 115.55408 * 154.33412 * 25 17 16 41 41 H 1.09007 * 117.49836 * 359.97438 * 26 25 17 42 42 H 1.08999 * 117.49743 * 145.01842 * 26 25 17 43 43 H 1.08999 * 117.49143 * 252.51451 * 27 26 25 44 44 H 1.08998 * 117.50243 * 107.48797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.1605 -3.8037 0.0003 13 8 5.5538 -4.8547 0.0012 14 6 7.6549 -3.8037 0.0008 15 8 8.2616 -2.7528 0.0004 16 7 8.3288 -4.9709 0.0017 17 6 9.7938 -4.9709 0.0028 18 1 10.1576 -4.1293 -0.5867 19 6 10.2966 -6.2588 -0.5969 20 6 11.3922 -6.2475 -1.4397 21 6 11.8501 -7.4282 -1.9939 22 6 11.2187 -8.6215 -1.6973 23 6 10.1233 -8.6329 -0.8541 24 6 9.6625 -7.4516 -0.3036 25 6 10.3028 -4.8447 1.4401 26 6 9.2724 -4.9499 2.5662 27 6 9.8979 -3.5957 2.2257 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6796 -0.8895 31 1 3.6585 -3.1502 -0.8903 32 1 3.6579 -3.1506 0.8896 33 1 5.9715 -1.7965 0.0003 34 1 7.8439 -5.8109 0.0025 35 1 11.8877 -5.3155 -1.6687 36 1 12.7034 -7.4187 -2.6559 37 1 11.5791 -9.5445 -2.1269 38 1 9.6279 -9.5649 -0.6250 39 1 8.8065 -7.4605 0.3549 40 1 11.2951 -5.2560 1.6253 41 1 8.2318 -5.1086 2.2831 42 1 9.5867 -5.4308 3.4925 43 1 10.6237 -3.1858 2.9281 44 1 9.2690 -2.8640 1.7186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340141053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:06 Heat of formation + Delta-G solvation = -19.490550 kcal Electronic energy + Delta-G solvation = -25520.712375 eV Core-core repulsion = 21824.833049 eV Total energy + Delta-G solvation = -3695.879326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07719 -39.70115 -38.58626 -37.19917 -35.37765 -34.33443 -32.83137 -31.81178 -31.21787 -30.30662 -27.47899 -25.70611 -23.64651 -22.96574 -22.46384 -22.19064 -20.92179 -20.49151 -20.04911 -18.54888 -17.23109 -17.08736 -16.70728 -16.61795 -15.79005 -15.50434 -15.27877 -14.92072 -14.86602 -14.34682 -14.18382 -13.82689 -13.70306 -13.59746 -13.27638 -13.10218 -12.83369 -12.62676 -12.22037 -11.76547 -11.66619 -11.55783 -11.48254 -11.40421 -11.26044 -10.60824 -10.45839 -10.32151 -10.22744 -9.97104 -9.56189 -9.41411 -9.31949 -9.27723 -9.09510 -8.80111 -8.62427 -6.13330 -4.14143 0.91438 1.03089 1.47829 2.40481 3.25842 3.28623 3.33904 3.35577 3.40165 3.56764 3.80603 4.14774 4.36834 4.49844 4.56743 4.60591 4.66553 4.75122 4.76602 4.90230 5.10109 5.13302 5.15191 5.19744 5.33751 5.54093 5.58345 5.64772 5.70265 5.90439 5.94648 6.00040 6.07245 6.08448 6.13031 6.14963 6.25040 6.44959 6.48461 6.59871 6.90657 7.07063 7.16894 7.51819 7.61257 7.80653 8.17223 8.40635 8.89891 9.46551 10.99406 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.002489 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.056038 B =11245.793571 C =11703.622723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.127 3.873 11 N -0.689 5.689 12 C 0.498 3.502 13 O -0.528 6.528 14 C 0.510 3.490 15 O -0.515 6.515 16 N -0.698 5.698 17 C 0.216 3.784 18 H 0.104 0.896 19 C -0.089 4.089 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.167 4.167 26 C -0.176 4.176 27 C -0.181 4.181 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.413 0.587 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.585 -14.781 -0.122 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.006 3.994 11 N -0.341 5.341 12 C 0.277 3.723 13 O -0.405 6.405 14 C 0.292 3.708 15 O -0.390 6.390 16 N -0.352 5.352 17 C 0.112 3.888 18 H 0.122 0.878 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.186 4.186 26 C -0.213 4.213 27 C -0.218 4.218 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.251 0.749 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 26.375 -14.633 -0.124 30.163 hybrid contribution 0.372 0.825 0.022 0.906 sum 26.747 -13.808 -0.102 30.101 Atomic orbital electron populations 1.69899 1.06286 1.27131 1.50200 1.24989 0.94777 0.99181 0.94257 0.86764 0.80335 0.83478 0.78617 1.20158 1.21224 1.18945 1.20872 0.88423 0.94954 1.52013 0.90540 1.19824 0.98118 0.90946 0.97235 1.21720 0.74666 1.00872 1.02188 1.46204 1.09537 1.07977 1.70333 1.19937 0.87611 0.85310 0.79438 1.90752 1.69611 1.30996 1.49187 1.20448 0.89059 0.84297 0.77007 1.90693 1.69846 1.31033 1.47442 1.45919 1.06655 1.09258 1.73397 1.19370 0.78816 0.95848 0.94804 0.87781 1.19782 0.96892 0.94157 0.98147 1.21010 0.96215 0.98694 0.96512 1.21147 1.00104 0.92491 0.99868 1.21211 0.96110 0.98153 0.98202 1.21167 0.96755 0.98124 0.97325 1.20982 0.99862 0.92060 0.99691 1.22664 0.99918 1.04519 0.91477 1.22972 0.98503 1.01217 0.98588 1.23364 1.03946 0.91689 1.02758 0.92494 0.95715 0.96152 0.91254 0.91212 0.75556 0.74928 0.85670 0.85832 0.85994 0.85758 0.85887 0.86974 0.88706 0.88887 0.89021 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.51 5.61 -4.05 -0.02 2.49 16 11 N -0.69 -11.59 5.55 -60.74 -0.34 -11.93 16 12 C 0.50 8.01 7.89 -11.59 -0.09 7.92 16 13 O -0.53 -9.53 16.48 5.50 0.09 -9.44 16 14 C 0.51 6.98 6.72 -11.59 -0.08 6.90 16 15 O -0.51 -7.63 13.51 5.50 0.07 -7.56 16 16 N -0.70 -7.65 3.56 -55.37 -0.20 -7.85 16 17 C 0.22 2.05 2.64 -69.08 -0.18 1.87 16 18 H 0.10 1.07 7.44 -51.93 -0.39 0.68 16 19 C -0.09 -0.76 4.93 -104.62 -0.52 -1.28 16 20 C -0.11 -0.81 9.67 -39.58 -0.38 -1.19 16 21 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 22 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 24 C -0.11 -0.88 9.06 -39.58 -0.36 -1.24 16 25 C -0.17 -1.51 5.69 -90.62 -0.52 -2.03 16 26 C -0.18 -1.71 9.73 -26.73 -0.26 -1.97 16 27 C -0.18 -1.88 9.82 -26.72 -0.26 -2.15 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 30 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.41 6.34 7.94 -40.82 -0.32 6.02 16 34 H 0.41 4.28 6.34 -40.82 -0.26 4.02 16 35 H 0.13 0.79 8.04 -52.49 -0.42 0.36 16 36 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.92 6.92 -52.49 -0.36 0.56 16 40 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 41 H 0.09 1.04 6.66 -51.92 -0.35 0.69 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.12 1.49 5.02 -51.93 -0.26 1.23 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -31.31 366.74 -9.24 -40.55 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.09 Total: 8.52 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -4.41 Total: -7.89 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.24 Total: -46.09 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -17.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.31 -9.24 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340141053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.060 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds