Wall clock time and date at job start Tue Mar 31 2020 11:13:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 120.00039 * 2 1
4 4 H 1.48495 * 109.47320 * 270.00309 * 3 2 1
5 5 H 1.48504 * 109.46894 * 30.00436 * 3 2 1
6 6 H 1.48500 * 109.47189 * 150.00198 * 3 2 1
7 7 C 1.37878 * 119.99803 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00241 * 359.97438 * 7 2 1
9 9 C 1.50705 * 119.99888 * 180.02562 * 7 2 1
10 10 C 1.52996 * 109.47285 * 179.97438 * 9 7 2
11 11 N 1.46497 * 109.47319 * 179.97438 * 10 9 7
12 12 C 1.34773 * 120.00479 * 179.97438 * 11 10 9
13 13 O 1.21352 * 119.99876 * 359.97438 * 12 11 10
14 14 C 1.49441 * 120.00215 * 180.02562 * 12 11 10
15 15 O 1.21344 * 120.00200 * 359.97438 * 14 12 11
16 16 N 1.34779 * 119.99860 * 179.97438 * 14 12 11
17 17 C 1.46503 * 120.00178 * 180.02562 * 16 14 12
18 18 H 1.09003 * 109.46989 * 324.99774 * 17 16 14
19 19 C 1.50702 * 109.47322 * 205.00445 * 17 16 14
20 20 C 1.38234 * 120.00257 * 140.00015 * 19 17 16
21 21 C 1.38238 * 119.99675 * 180.25732 * 20 19 17
22 22 C 1.38228 * 120.00114 * 359.50218 * 21 20 19
23 23 C 1.38234 * 120.00051 * 0.47390 * 22 21 20
24 24 C 1.38235 * 119.99522 * 319.97028 * 19 17 16
25 25 C 1.52995 * 109.47530 * 84.99848 * 17 16 14
26 26 C 1.53003 * 117.49672 * 8.62385 * 25 17 16
27 27 C 1.53005 * 60.00213 * 252.51367 * 26 25 17
28 28 H 0.96999 * 120.00008 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.46922 * 59.99562 * 9 7 2
30 30 H 1.09004 * 109.46978 * 300.00127 * 9 7 2
31 31 H 1.08999 * 109.47074 * 59.99625 * 10 9 7
32 32 H 1.08997 * 109.47127 * 299.99773 * 10 9 7
33 33 H 0.97006 * 119.99712 * 0.02562 * 11 10 9
34 34 H 0.96994 * 120.00504 * 359.97438 * 16 14 12
35 35 H 1.08002 * 119.99744 * 359.97115 * 20 19 17
36 36 H 1.08004 * 119.99577 * 179.72816 * 21 20 19
37 37 H 1.07999 * 119.99927 * 180.26554 * 22 21 20
38 38 H 1.08001 * 120.00294 * 179.78842 * 23 22 21
39 39 H 1.07996 * 120.00471 * 0.02562 * 24 19 17
40 40 H 1.08997 * 115.55408 * 154.33412 * 25 17 16
41 41 H 1.09007 * 117.49836 * 359.97438 * 26 25 17
42 42 H 1.08999 * 117.49743 * 145.01842 * 26 25 17
43 43 H 1.08999 * 117.49143 * 252.51451 * 27 26 25
44 44 H 1.08998 * 117.50243 * 107.48797 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6526 0.7002
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5116 -1.1941 0.0000
10 6 4.0216 -2.6366 -0.0001
11 7 5.4865 -2.6366 -0.0001
12 6 6.1605 -3.8037 0.0003
13 8 5.5538 -4.8547 0.0012
14 6 7.6549 -3.8037 0.0008
15 8 8.2616 -2.7528 0.0004
16 7 8.3288 -4.9709 0.0017
17 6 9.7938 -4.9709 0.0028
18 1 10.1576 -4.1293 -0.5867
19 6 10.2966 -6.2588 -0.5969
20 6 11.3922 -6.2475 -1.4397
21 6 11.8501 -7.4282 -1.9939
22 6 11.2187 -8.6215 -1.6973
23 6 10.1233 -8.6329 -0.8541
24 6 9.6625 -7.4516 -0.3036
25 6 10.3028 -4.8447 1.4401
26 6 9.2724 -4.9499 2.5662
27 6 9.8979 -3.5957 2.2257
28 1 -0.4850 0.8400 0.0004
29 1 3.8745 -0.6808 0.8905
30 1 3.8752 -0.6796 -0.8895
31 1 3.6585 -3.1502 -0.8903
32 1 3.6579 -3.1506 0.8896
33 1 5.9715 -1.7965 0.0003
34 1 7.8439 -5.8109 0.0025
35 1 11.8877 -5.3155 -1.6687
36 1 12.7034 -7.4187 -2.6559
37 1 11.5791 -9.5445 -2.1269
38 1 9.6279 -9.5649 -0.6250
39 1 8.8065 -7.4605 0.3549
40 1 11.2951 -5.2560 1.6253
41 1 8.2318 -5.1086 2.2831
42 1 9.5867 -5.4308 3.4925
43 1 10.6237 -3.1858 2.9281
44 1 9.2690 -2.8640 1.7186
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001340141053.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:06
Heat of formation + Delta-G solvation = -19.490550 kcal
Electronic energy + Delta-G solvation = -25520.712375 eV
Core-core repulsion = 21824.833049 eV
Total energy + Delta-G solvation = -3695.879326 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.07719 -39.70115 -38.58626 -37.19917 -35.37765 -34.33443 -32.83137 -31.81178
-31.21787 -30.30662 -27.47899 -25.70611 -23.64651 -22.96574 -22.46384 -22.19064
-20.92179 -20.49151 -20.04911 -18.54888 -17.23109 -17.08736 -16.70728 -16.61795
-15.79005 -15.50434 -15.27877 -14.92072 -14.86602 -14.34682 -14.18382 -13.82689
-13.70306 -13.59746 -13.27638 -13.10218 -12.83369 -12.62676 -12.22037 -11.76547
-11.66619 -11.55783 -11.48254 -11.40421 -11.26044 -10.60824 -10.45839 -10.32151
-10.22744 -9.97104 -9.56189 -9.41411 -9.31949 -9.27723 -9.09510 -8.80111
-8.62427 -6.13330 -4.14143 0.91438 1.03089 1.47829 2.40481 3.25842
3.28623 3.33904 3.35577 3.40165 3.56764 3.80603 4.14774 4.36834
4.49844 4.56743 4.60591 4.66553 4.75122 4.76602 4.90230 5.10109
5.13302 5.15191 5.19744 5.33751 5.54093 5.58345 5.64772 5.70265
5.90439 5.94648 6.00040 6.07245 6.08448 6.13031 6.14963 6.25040
6.44959 6.48461 6.59871 6.90657 7.07063 7.16894 7.51819 7.61257
7.80653 8.17223 8.40635 8.89891 9.46551 10.99406
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.022869 B = 0.002489 C = 0.002392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1224.056038 B =11245.793571 C =11703.622723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.070 3.930
3 Si 0.881 3.119
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.265 1.265
7 C -0.524 4.524
8 H 0.076 0.924
9 C -0.023 4.023
10 C 0.127 3.873
11 N -0.689 5.689
12 C 0.498 3.502
13 O -0.528 6.528
14 C 0.510 3.490
15 O -0.515 6.515
16 N -0.698 5.698
17 C 0.216 3.784
18 H 0.104 0.896
19 C -0.089 4.089
20 C -0.106 4.106
21 C -0.118 4.118
22 C -0.119 4.119
23 C -0.116 4.116
24 C -0.108 4.108
25 C -0.167 4.167
26 C -0.176 4.176
27 C -0.181 4.181
28 H 0.265 0.735
29 H 0.025 0.975
30 H 0.020 0.980
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.409 0.591
34 H 0.413 0.587
35 H 0.125 0.875
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.124 0.876
39 H 0.123 0.877
40 H 0.112 0.888
41 H 0.095 0.905
42 H 0.093 0.907
43 H 0.091 0.909
44 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.585 -14.781 -0.122 30.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.132 4.132
3 Si 0.708 3.292
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.189 1.189
7 C -0.563 4.563
8 H 0.095 0.905
9 C -0.061 4.061
10 C 0.006 3.994
11 N -0.341 5.341
12 C 0.277 3.723
13 O -0.405 6.405
14 C 0.292 3.708
15 O -0.390 6.390
16 N -0.352 5.352
17 C 0.112 3.888
18 H 0.122 0.878
19 C -0.090 4.090
20 C -0.124 4.124
21 C -0.136 4.136
22 C -0.137 4.137
23 C -0.134 4.134
24 C -0.126 4.126
25 C -0.186 4.186
26 C -0.213 4.213
27 C -0.218 4.218
28 H 0.075 0.925
29 H 0.043 0.957
30 H 0.038 0.962
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.244 0.756
34 H 0.251 0.749
35 H 0.143 0.857
36 H 0.142 0.858
37 H 0.140 0.860
38 H 0.142 0.858
39 H 0.141 0.859
40 H 0.130 0.870
41 H 0.113 0.887
42 H 0.111 0.889
43 H 0.110 0.890
44 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 26.375 -14.633 -0.124 30.163
hybrid contribution 0.372 0.825 0.022 0.906
sum 26.747 -13.808 -0.102 30.101
Atomic orbital electron populations
1.69899 1.06286 1.27131 1.50200 1.24989 0.94777 0.99181 0.94257
0.86764 0.80335 0.83478 0.78617 1.20158 1.21224 1.18945 1.20872
0.88423 0.94954 1.52013 0.90540 1.19824 0.98118 0.90946 0.97235
1.21720 0.74666 1.00872 1.02188 1.46204 1.09537 1.07977 1.70333
1.19937 0.87611 0.85310 0.79438 1.90752 1.69611 1.30996 1.49187
1.20448 0.89059 0.84297 0.77007 1.90693 1.69846 1.31033 1.47442
1.45919 1.06655 1.09258 1.73397 1.19370 0.78816 0.95848 0.94804
0.87781 1.19782 0.96892 0.94157 0.98147 1.21010 0.96215 0.98694
0.96512 1.21147 1.00104 0.92491 0.99868 1.21211 0.96110 0.98153
0.98202 1.21167 0.96755 0.98124 0.97325 1.20982 0.99862 0.92060
0.99691 1.22664 0.99918 1.04519 0.91477 1.22972 0.98503 1.01217
0.98588 1.23364 1.03946 0.91689 1.02758 0.92494 0.95715 0.96152
0.91254 0.91212 0.75556 0.74928 0.85670 0.85832 0.85994 0.85758
0.85887 0.86974 0.88706 0.88887 0.89021 0.86502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16
2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16
3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16
7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16
8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16
9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16
10 C 0.13 2.51 5.61 -4.05 -0.02 2.49 16
11 N -0.69 -11.59 5.55 -60.74 -0.34 -11.93 16
12 C 0.50 8.01 7.89 -11.59 -0.09 7.92 16
13 O -0.53 -9.53 16.48 5.50 0.09 -9.44 16
14 C 0.51 6.98 6.72 -11.59 -0.08 6.90 16
15 O -0.51 -7.63 13.51 5.50 0.07 -7.56 16
16 N -0.70 -7.65 3.56 -55.37 -0.20 -7.85 16
17 C 0.22 2.05 2.64 -69.08 -0.18 1.87 16
18 H 0.10 1.07 7.44 -51.93 -0.39 0.68 16
19 C -0.09 -0.76 4.93 -104.62 -0.52 -1.28 16
20 C -0.11 -0.81 9.67 -39.58 -0.38 -1.19 16
21 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16
22 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16
23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16
24 C -0.11 -0.88 9.06 -39.58 -0.36 -1.24 16
25 C -0.17 -1.51 5.69 -90.62 -0.52 -2.03 16
26 C -0.18 -1.71 9.73 -26.73 -0.26 -1.97 16
27 C -0.18 -1.88 9.82 -26.72 -0.26 -2.15 16
28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
29 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16
30 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16
31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16
32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
33 H 0.41 6.34 7.94 -40.82 -0.32 6.02 16
34 H 0.41 4.28 6.34 -40.82 -0.26 4.02 16
35 H 0.13 0.79 8.04 -52.49 -0.42 0.36 16
36 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16
37 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16
38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16
39 H 0.12 0.92 6.92 -52.49 -0.36 0.56 16
40 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16
41 H 0.09 1.04 6.66 -51.92 -0.35 0.69 16
42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
44 H 0.12 1.49 5.02 -51.93 -0.26 1.23 16
LS Contribution 366.74 15.07 5.53 5.53
Total: -1.00 -31.31 366.74 -9.24 -40.55
By element:
Atomic # 1 Polarization: 14.61 SS G_CDS: -6.09 Total: 8.52 kcal
Atomic # 6 Polarization: -3.48 SS G_CDS: -4.41 Total: -7.89 kcal
Atomic # 7 Polarization: -46.33 SS G_CDS: 0.24 Total: -46.09 kcal
Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -17.00 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -31.31 -9.24 -40.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340141053.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.060 kcal
(2) G-P(sol) polarization free energy of solvation -31.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds