Wall clock time and date at job start Tue Mar 31 2020 11:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48495 * 109.47320 * 270.00309 * 3 2 1 5 5 H 1.48504 * 109.46894 * 30.00436 * 3 2 1 6 6 H 1.48500 * 109.47189 * 150.00198 * 3 2 1 7 7 C 1.37878 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00241 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47285 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00479 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.49441 * 120.00215 * 180.02562 * 12 11 10 15 15 O 1.21344 * 120.00200 * 359.97438 * 14 12 11 16 16 N 1.34779 * 119.99860 * 179.97438 * 14 12 11 17 17 C 1.46503 * 120.00178 * 180.02562 * 16 14 12 18 18 H 1.09003 * 109.46989 * 324.99774 * 17 16 14 19 19 C 1.50702 * 109.47322 * 205.00445 * 17 16 14 20 20 C 1.38234 * 120.00257 * 140.00015 * 19 17 16 21 21 C 1.38238 * 119.99675 * 180.25732 * 20 19 17 22 22 C 1.38228 * 120.00114 * 359.50218 * 21 20 19 23 23 C 1.38234 * 120.00051 * 0.47390 * 22 21 20 24 24 C 1.38235 * 119.99522 * 319.97028 * 19 17 16 25 25 C 1.52995 * 109.47530 * 84.99848 * 17 16 14 26 26 C 1.53003 * 117.49672 * 8.62385 * 25 17 16 27 27 C 1.53005 * 60.00213 * 252.51367 * 26 25 17 28 28 H 0.96999 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 59.99562 * 9 7 2 30 30 H 1.09004 * 109.46978 * 300.00127 * 9 7 2 31 31 H 1.08999 * 109.47074 * 59.99625 * 10 9 7 32 32 H 1.08997 * 109.47127 * 299.99773 * 10 9 7 33 33 H 0.97006 * 119.99712 * 0.02562 * 11 10 9 34 34 H 0.96994 * 120.00504 * 359.97438 * 16 14 12 35 35 H 1.08002 * 119.99744 * 359.97115 * 20 19 17 36 36 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 37 37 H 1.07999 * 119.99927 * 180.26554 * 22 21 20 38 38 H 1.08001 * 120.00294 * 179.78842 * 23 22 21 39 39 H 1.07996 * 120.00471 * 0.02562 * 24 19 17 40 40 H 1.08997 * 115.55408 * 154.33412 * 25 17 16 41 41 H 1.09007 * 117.49836 * 359.97438 * 26 25 17 42 42 H 1.08999 * 117.49743 * 145.01842 * 26 25 17 43 43 H 1.08999 * 117.49143 * 252.51451 * 27 26 25 44 44 H 1.08998 * 117.50243 * 107.48797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 6 6.1605 -3.8037 0.0003 13 8 5.5538 -4.8547 0.0012 14 6 7.6549 -3.8037 0.0008 15 8 8.2616 -2.7528 0.0004 16 7 8.3288 -4.9709 0.0017 17 6 9.7938 -4.9709 0.0028 18 1 10.1576 -4.1293 -0.5867 19 6 10.2966 -6.2588 -0.5969 20 6 11.3922 -6.2475 -1.4397 21 6 11.8501 -7.4282 -1.9939 22 6 11.2187 -8.6215 -1.6973 23 6 10.1233 -8.6329 -0.8541 24 6 9.6625 -7.4516 -0.3036 25 6 10.3028 -4.8447 1.4401 26 6 9.2724 -4.9499 2.5662 27 6 9.8979 -3.5957 2.2257 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6796 -0.8895 31 1 3.6585 -3.1502 -0.8903 32 1 3.6579 -3.1506 0.8896 33 1 5.9715 -1.7965 0.0003 34 1 7.8439 -5.8109 0.0025 35 1 11.8877 -5.3155 -1.6687 36 1 12.7034 -7.4187 -2.6559 37 1 11.5791 -9.5445 -2.1269 38 1 9.6279 -9.5649 -0.6250 39 1 8.8065 -7.4605 0.3549 40 1 11.2951 -5.2560 1.6253 41 1 8.2318 -5.1086 2.2831 42 1 9.5867 -5.4308 3.4925 43 1 10.6237 -3.1858 2.9281 44 1 9.2690 -2.8640 1.7186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340141053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:05 Heat of formation + Delta-G solvation = -38.874264 kcal Electronic energy + Delta-G solvation = -25521.552916 eV Core-core repulsion = 21824.833049 eV Total energy + Delta-G solvation = -3696.719867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.10726 -40.61721 -39.58973 -38.09090 -36.90153 -35.33134 -34.76245 -32.51315 -32.13824 -31.76680 -28.39654 -27.24503 -24.95588 -23.70118 -23.17258 -22.83220 -22.66991 -21.59917 -20.93447 -19.70835 -19.02951 -17.97303 -17.94111 -17.53664 -16.74423 -16.63363 -16.29439 -16.22063 -15.90806 -15.57055 -15.47679 -15.14502 -14.73223 -14.59016 -14.26178 -14.20490 -13.91220 -13.57048 -13.40327 -13.08007 -13.03801 -12.82719 -12.44586 -12.23806 -12.21492 -12.18144 -11.93380 -11.78894 -11.52258 -11.37675 -10.98492 -10.79652 -10.74928 -10.35283 -10.25752 -9.82981 -9.69306 -8.30785 -6.37643 0.25543 0.35672 0.49100 1.27225 1.39317 1.40861 1.52050 2.06865 2.35859 2.55846 2.79922 2.92412 3.04414 3.36675 3.46720 3.84198 3.90501 4.05461 4.13151 4.15509 4.25051 4.29601 4.37453 4.40183 4.44938 4.61559 4.71035 4.72570 4.77348 4.91735 4.96896 5.04252 5.08097 5.15547 5.21227 5.27199 5.29893 5.36041 5.54632 5.57757 5.61639 5.62975 5.87699 6.08244 6.19589 6.30633 6.65164 6.71586 6.89009 7.26955 8.85474 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.002489 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.056038 B =11245.793571 C =11703.622723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.536 4.536 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.142 3.858 11 N -0.686 5.686 12 C 0.499 3.501 13 O -0.549 6.549 14 C 0.518 3.482 15 O -0.525 6.525 16 N -0.683 5.683 17 C 0.218 3.782 18 H 0.099 0.901 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.153 4.153 26 C -0.177 4.177 27 C -0.191 4.191 28 H 0.268 0.732 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.418 0.582 34 H 0.416 0.584 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.789 -14.820 -0.328 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.054 4.054 10 C 0.019 3.981 11 N -0.338 5.338 12 C 0.279 3.721 13 O -0.428 6.428 14 C 0.299 3.701 15 O -0.401 6.401 16 N -0.337 5.337 17 C 0.114 3.886 18 H 0.116 0.884 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.172 4.172 26 C -0.214 4.214 27 C -0.228 4.228 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.255 0.745 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 29.624 -14.704 -0.330 33.074 hybrid contribution -0.640 0.682 0.068 0.937 sum 28.984 -14.023 -0.262 32.199 Atomic orbital electron populations 1.70057 1.08391 1.28389 1.51889 1.25998 0.95645 1.03599 0.93782 0.85623 0.79651 0.77865 0.79301 1.19094 1.21150 1.16379 1.21197 0.91189 0.93565 1.51500 0.94598 1.19690 0.94763 0.92842 0.98153 1.21279 0.76534 0.98984 1.01289 1.45966 1.08222 1.08871 1.70732 1.20358 0.88838 0.84552 0.78321 1.90742 1.70437 1.31685 1.49890 1.19887 0.87646 0.84961 0.77623 1.90703 1.69512 1.31495 1.48440 1.45906 1.07495 1.08471 1.71841 1.19447 0.77391 0.96479 0.95248 0.88351 1.19710 0.97695 0.93542 0.99100 1.21220 0.96049 0.99669 0.96282 1.21447 1.00598 0.92179 0.99808 1.21534 0.95685 0.99096 0.97676 1.21417 0.97099 0.98425 0.97318 1.21093 1.00135 0.92426 1.00156 1.22688 1.00367 1.03336 0.90845 1.22977 0.97931 1.00955 0.99534 1.23324 1.04319 0.91641 1.03535 0.92305 0.94597 0.94745 0.92293 0.92241 0.74512 0.74516 0.84582 0.83808 0.83981 0.84363 0.85844 0.85359 0.90144 0.87476 0.87781 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 42.72 27.47 68.60 1.88 44.60 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 7 C -0.54 -30.17 9.66 25.60 0.25 -29.92 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.21 16 9 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 10 C 0.14 5.62 5.61 86.38 0.48 6.10 16 11 N -0.69 -22.54 5.55 -464.44 -2.58 -25.11 16 12 C 0.50 15.84 7.89 87.27 0.69 16.53 16 13 O -0.55 -19.81 16.48 -3.25 -0.05 -19.86 16 14 C 0.52 13.81 6.72 87.27 0.59 14.39 16 15 O -0.52 -15.07 13.51 -3.23 -0.04 -15.12 16 16 N -0.68 -14.45 3.56 -447.44 -1.59 -16.04 16 17 C 0.22 3.86 2.64 44.24 0.12 3.97 16 18 H 0.10 1.90 7.44 -2.39 -0.02 1.88 16 19 C -0.10 -1.55 4.93 -19.87 -0.10 -1.65 16 20 C -0.11 -1.52 9.67 22.27 0.22 -1.31 16 21 C -0.12 -1.39 10.05 22.27 0.22 -1.17 16 22 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 23 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 24 C -0.12 -1.79 9.06 22.27 0.20 -1.59 16 25 C -0.15 -2.54 5.69 -10.79 -0.06 -2.60 16 26 C -0.18 -3.22 9.73 30.60 0.30 -2.92 16 27 C -0.19 -3.75 9.82 30.60 0.30 -3.45 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 30 H 0.03 1.44 7.57 -2.38 -0.02 1.43 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.42 12.33 7.94 -92.70 -0.74 11.60 16 34 H 0.42 8.38 6.34 -92.71 -0.59 7.79 16 35 H 0.14 1.43 8.04 -2.91 -0.02 1.41 16 36 H 0.14 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.12 1.74 6.92 -2.91 -0.02 1.72 16 40 H 0.13 1.75 8.11 -2.39 -0.02 1.73 16 41 H 0.08 1.70 6.66 -2.38 -0.02 1.69 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.35 5.02 -2.39 -0.01 2.33 16 Total: -1.00 -68.06 366.74 1.81 -66.25 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.35 Total: 29.46 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.24 Total: -5.86 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.87 Total: -99.48 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.10 Total: -34.98 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Total: -68.06 1.81 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340141053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds