Wall clock time and date at job start Tue Mar 31 2020 11:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99497 * 2 1 4 4 H 1.48506 * 109.46667 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47520 * 299.99762 * 3 2 1 6 6 H 1.48497 * 109.47465 * 60.00230 * 3 2 1 7 7 C 1.39945 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99433 * 163.66396 * 7 2 1 9 9 C 1.41395 * 119.99984 * 343.66801 * 7 2 1 10 10 C 1.40732 * 120.24425 * 334.04637 * 9 7 2 11 11 C 1.37598 * 119.74352 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24856 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50200 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24946 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.12888 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46903 * 265.00255 * 15 14 13 17 17 O 1.21276 * 120.00204 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99939 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00114 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.43586 * 34.30029 * 19 18 16 21 21 C 1.54263 * 110.48986 * 271.75307 * 19 18 16 22 22 C 1.53872 * 106.60362 * 217.71155 * 21 19 18 23 23 C 1.54264 * 106.59615 * 0.02562 * 22 21 19 24 24 H 1.09008 * 110.48775 * 264.92971 * 23 22 21 25 25 C 1.50703 * 110.48793 * 142.42004 * 23 22 21 26 26 N 1.34779 * 119.99672 * 61.45294 * 25 23 22 27 27 O 1.21278 * 119.99913 * 241.45342 * 25 23 22 28 28 C 1.54892 * 110.48579 * 156.83786 * 19 18 16 29 29 H 0.97004 * 120.00060 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.12663 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87153 * 180.29634 * 11 10 9 32 32 H 1.08000 * 119.74878 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.87350 * 179.97438 * 13 12 11 34 34 H 1.08996 * 109.46895 * 24.99904 * 15 14 13 35 35 H 1.08992 * 109.47010 * 145.00149 * 15 14 13 36 36 H 0.97005 * 119.99746 * 359.97438 * 18 16 15 37 37 H 1.09002 * 110.02832 * 337.00105 * 21 19 18 38 38 H 1.09003 * 110.03202 * 98.37696 * 21 19 18 39 39 H 1.08998 * 110.03335 * 119.28048 * 22 21 19 40 40 H 1.08990 * 110.03538 * 240.71626 * 22 21 19 41 41 H 0.96996 * 119.99865 * 359.97438 * 26 25 23 42 42 H 0.97002 * 119.99282 * 179.97438 * 26 25 23 43 43 H 1.09004 * 110.75276 * 274.93580 * 28 19 18 44 44 H 1.08998 * 110.76000 * 38.30198 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2308 -0.2625 9 6 1.3439 -2.4116 0.3454 10 6 0.2129 -2.3803 1.1823 11 6 -0.4259 -3.5540 1.5109 12 6 0.0412 -4.7642 1.0212 13 6 1.1548 -4.8070 0.1970 14 6 1.8095 -3.6455 -0.1448 15 6 3.0197 -3.6951 -1.0415 16 6 4.2686 -3.7254 -0.1985 17 8 4.1842 -3.7078 1.0112 18 7 5.4792 -3.7709 -0.7890 19 6 6.6932 -3.7997 0.0303 20 1 6.5189 -4.3592 0.9494 21 6 7.1619 -2.3656 0.3518 22 6 8.6997 -2.3839 0.3015 23 6 9.1119 -3.8284 -0.0494 24 1 9.3304 -4.3937 0.8567 25 6 10.3054 -3.8276 -0.9696 26 7 11.4709 -3.2882 -0.5609 27 8 10.2170 -4.3123 -2.0778 28 6 7.8697 -4.4176 -0.7654 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1528 -1.4388 1.5645 31 1 -1.2968 -3.5319 2.1491 32 1 -0.4661 -5.6805 1.2846 33 1 1.5101 -5.7552 -0.1783 34 1 2.9770 -4.5916 -1.6600 35 1 3.0343 -2.8127 -1.6811 36 1 5.5466 -3.7845 -1.7567 37 1 6.7722 -1.6700 -0.3915 38 1 6.8236 -2.0764 1.3468 39 1 9.0564 -1.6973 -0.4662 40 1 9.1084 -2.1041 1.2724 41 1 11.5414 -2.9002 0.3252 42 1 12.2392 -3.2880 -1.1531 43 1 7.8576 -5.5050 -0.6909 44 1 7.8399 -4.1005 -1.8078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361500117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:09 Heat of formation + Delta-G solvation = -78.426424 kcal Electronic energy + Delta-G solvation = -26013.151212 eV Core-core repulsion = 22314.716235 eV Total energy + Delta-G solvation = -3698.434977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32469 -39.19178 -37.63255 -36.77650 -34.07676 -33.57667 -33.18247 -31.60731 -29.41692 -29.09329 -28.27548 -26.34701 -24.88800 -22.67379 -21.10810 -20.86314 -20.37361 -19.80128 -19.18787 -17.75089 -17.16477 -17.03181 -16.50443 -15.86847 -15.67949 -15.34326 -14.56492 -14.47845 -14.38937 -14.01161 -13.58348 -13.53759 -13.22673 -12.94947 -12.55667 -12.31633 -12.10097 -11.69588 -11.59599 -11.52605 -11.40031 -11.12935 -11.08205 -10.95698 -10.92406 -10.63902 -10.58784 -10.35312 -10.11666 -10.01646 -9.43653 -9.32624 -9.13703 -9.08773 -8.64811 -7.26453 -7.24154 -6.69726 -4.29809 2.35210 2.81134 3.00795 3.09102 3.14009 3.19265 3.29972 3.39346 3.71428 3.96430 4.26150 4.37569 4.63073 4.70536 4.96981 5.18994 5.23290 5.30424 5.36615 5.45718 5.60547 5.65717 5.85490 5.88689 6.00750 6.07091 6.13145 6.23238 6.31802 6.33855 6.43870 6.49261 6.55847 6.85084 6.90794 6.99121 7.13136 7.34339 7.47049 7.69095 7.94377 7.95622 8.02560 8.13015 8.17844 8.36319 8.69635 8.93311 8.96511 9.06361 10.24624 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003469 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.254291 B = 8070.210468 C = 9485.561771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.128 3.872 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.072 4.072 16 C 0.516 3.484 17 O -0.521 6.521 18 N -0.739 5.739 19 C 0.143 3.857 20 H 0.092 0.908 21 C -0.137 4.137 22 C -0.111 4.111 23 C -0.116 4.116 24 H 0.106 0.894 25 C 0.526 3.474 26 N -0.857 5.857 27 O -0.542 6.542 28 C -0.109 4.109 29 H 0.278 0.722 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.397 0.603 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.400 0.600 43 H 0.077 0.923 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.126 -2.820 -1.043 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.093 0.907 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.181 4.181 15 C -0.112 4.112 16 C 0.304 3.696 17 O -0.395 6.395 18 N -0.392 5.392 19 C 0.038 3.962 20 H 0.111 0.889 21 C -0.176 4.176 22 C -0.149 4.149 23 C -0.138 4.138 24 H 0.124 0.876 25 C 0.311 3.689 26 N -0.421 5.421 27 O -0.418 6.418 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.230 0.770 43 H 0.096 0.904 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.579 -2.999 -0.829 17.852 hybrid contribution 0.819 1.061 -0.182 1.353 sum 18.398 -1.938 -1.011 18.527 Atomic orbital electron populations 1.69834 1.07458 1.28877 1.36023 1.25874 0.94676 1.01088 0.92404 0.86365 0.81036 0.81430 0.78505 1.18551 1.20071 1.19766 1.19498 0.97191 0.90940 1.40904 0.90741 1.17341 0.90762 0.91295 0.87994 1.21289 0.99070 0.96640 1.00899 1.20671 0.98632 0.93485 0.99821 1.20306 1.01563 0.96145 1.07878 1.20305 0.95927 0.95566 0.98229 1.19059 0.99217 0.94001 1.05795 1.20276 0.90637 1.02795 0.97482 1.21234 0.84368 0.74578 0.89464 1.90667 1.86782 1.47262 1.14760 1.46169 1.05365 1.77981 1.09731 1.21663 0.83938 0.95558 0.95051 0.88947 1.22578 0.93667 0.97992 1.03397 1.22095 0.96956 0.93984 1.01869 1.22145 0.93312 0.99341 0.98954 0.87644 1.20602 0.84333 0.76355 0.87601 1.43901 1.13745 1.63503 1.20909 1.90748 1.84079 1.45439 1.21579 1.22625 0.91363 1.00606 1.00154 0.91080 0.86579 0.89628 0.89701 0.89771 0.90626 0.88599 0.76966 0.90830 0.90646 0.91352 0.90858 0.76988 0.76993 0.90449 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.69 10.97 55.55 0.61 -20.08 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.02 8.14 -37.74 -0.31 -12.33 16 8 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 9 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 10 C -0.16 -4.31 8.69 -38.87 -0.34 -4.65 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.24 -5.66 10.05 -39.29 -0.39 -6.05 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 14 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 15 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 16 C 0.52 9.95 7.46 -10.98 -0.08 9.87 16 17 O -0.52 -12.30 15.71 5.56 0.09 -12.21 16 18 N -0.74 -10.68 5.10 -52.20 -0.27 -10.95 16 19 C 0.14 1.83 3.18 -66.27 -0.21 1.62 16 20 H 0.09 1.32 7.61 -51.93 -0.40 0.93 16 21 C -0.14 -1.66 6.54 -25.62 -0.17 -1.83 16 22 C -0.11 -0.93 6.30 -25.62 -0.16 -1.09 16 23 C -0.12 -0.98 3.24 -90.05 -0.29 -1.27 16 24 H 0.11 0.70 8.14 -51.92 -0.42 0.28 16 25 C 0.53 4.97 7.29 -10.98 -0.08 4.89 16 26 N -0.86 -4.73 8.81 31.22 0.28 -4.45 16 27 O -0.54 -7.49 16.61 5.56 0.09 -7.40 16 28 C -0.11 -1.14 5.53 -24.67 -0.14 -1.27 16 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 30 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.08 1.25 8.05 -51.93 -0.42 0.84 16 35 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 36 H 0.40 4.67 8.55 -40.82 -0.35 4.33 16 37 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.57 7.83 -51.93 -0.41 0.17 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.40 1.12 8.81 -40.82 -0.36 0.76 16 42 H 0.40 1.87 8.93 -40.82 -0.36 1.51 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.96 7.41 -51.93 -0.39 0.58 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -33.91 364.78 -9.21 -43.12 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.23 Total: 11.73 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -4.25 Total: -19.14 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.62 Total: -35.48 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.91 -9.21 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361500117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.306 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds