Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99497 * 2 1 4 4 H 1.48506 * 109.46667 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47520 * 299.99762 * 3 2 1 6 6 H 1.48497 * 109.47465 * 60.00230 * 3 2 1 7 7 C 1.39945 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99433 * 163.66396 * 7 2 1 9 9 C 1.41395 * 119.99984 * 343.66801 * 7 2 1 10 10 C 1.40732 * 120.24425 * 334.04637 * 9 7 2 11 11 C 1.37598 * 119.74352 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24856 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50200 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24946 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.12888 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46903 * 265.00255 * 15 14 13 17 17 O 1.21276 * 120.00204 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99939 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00114 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.43586 * 34.30029 * 19 18 16 21 21 C 1.54263 * 110.48986 * 271.75307 * 19 18 16 22 22 C 1.53872 * 106.60362 * 217.71155 * 21 19 18 23 23 C 1.54264 * 106.59615 * 0.02562 * 22 21 19 24 24 H 1.09008 * 110.48775 * 264.92971 * 23 22 21 25 25 C 1.50703 * 110.48793 * 142.42004 * 23 22 21 26 26 N 1.34779 * 119.99672 * 61.45294 * 25 23 22 27 27 O 1.21278 * 119.99913 * 241.45342 * 25 23 22 28 28 C 1.54892 * 110.48579 * 156.83786 * 19 18 16 29 29 H 0.97004 * 120.00060 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.12663 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.87153 * 180.29634 * 11 10 9 32 32 H 1.08000 * 119.74878 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.87350 * 179.97438 * 13 12 11 34 34 H 1.08996 * 109.46895 * 24.99904 * 15 14 13 35 35 H 1.08992 * 109.47010 * 145.00149 * 15 14 13 36 36 H 0.97005 * 119.99746 * 359.97438 * 18 16 15 37 37 H 1.09002 * 110.02832 * 337.00105 * 21 19 18 38 38 H 1.09003 * 110.03202 * 98.37696 * 21 19 18 39 39 H 1.08998 * 110.03335 * 119.28048 * 22 21 19 40 40 H 1.08990 * 110.03538 * 240.71626 * 22 21 19 41 41 H 0.96996 * 119.99865 * 359.97438 * 26 25 23 42 42 H 0.97002 * 119.99282 * 179.97438 * 26 25 23 43 43 H 1.09004 * 110.75276 * 274.93580 * 28 19 18 44 44 H 1.08998 * 110.76000 * 38.30198 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2308 -0.2625 9 6 1.3439 -2.4116 0.3454 10 6 0.2129 -2.3803 1.1823 11 6 -0.4259 -3.5540 1.5109 12 6 0.0412 -4.7642 1.0212 13 6 1.1548 -4.8070 0.1970 14 6 1.8095 -3.6455 -0.1448 15 6 3.0197 -3.6951 -1.0415 16 6 4.2686 -3.7254 -0.1985 17 8 4.1842 -3.7078 1.0112 18 7 5.4792 -3.7709 -0.7890 19 6 6.6932 -3.7997 0.0303 20 1 6.5189 -4.3592 0.9494 21 6 7.1619 -2.3656 0.3518 22 6 8.6997 -2.3839 0.3015 23 6 9.1119 -3.8284 -0.0494 24 1 9.3304 -4.3937 0.8567 25 6 10.3054 -3.8276 -0.9696 26 7 11.4709 -3.2882 -0.5609 27 8 10.2170 -4.3123 -2.0778 28 6 7.8697 -4.4176 -0.7654 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1528 -1.4388 1.5645 31 1 -1.2968 -3.5319 2.1491 32 1 -0.4661 -5.6805 1.2846 33 1 1.5101 -5.7552 -0.1783 34 1 2.9770 -4.5916 -1.6600 35 1 3.0343 -2.8127 -1.6811 36 1 5.5466 -3.7845 -1.7567 37 1 6.7722 -1.6700 -0.3915 38 1 6.8236 -2.0764 1.3468 39 1 9.0564 -1.6973 -0.4662 40 1 9.1084 -2.1041 1.2724 41 1 11.5414 -2.9002 0.3252 42 1 12.2392 -3.2880 -1.1531 43 1 7.8576 -5.5050 -0.6909 44 1 7.8399 -4.1005 -1.8078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361500117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = -102.436592 kcal Electronic energy + Delta-G solvation = -26014.192371 eV Core-core repulsion = 22314.716235 eV Total energy + Delta-G solvation = -3699.476137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25175 -40.52481 -39.22113 -38.03322 -35.48481 -34.91263 -34.28575 -33.32352 -31.33291 -29.95953 -29.49663 -27.89433 -26.72973 -23.47272 -22.82042 -22.49482 -21.40453 -21.05325 -20.45781 -19.05428 -18.44717 -17.88500 -17.73082 -17.26249 -16.83080 -16.76051 -16.16997 -16.05769 -15.41966 -15.32500 -14.97128 -14.92017 -14.44260 -14.38645 -14.27385 -13.60274 -13.37475 -13.19008 -13.01454 -12.89220 -12.77175 -12.70979 -12.47073 -12.44102 -12.18664 -12.10289 -11.89595 -11.51652 -11.30535 -11.19264 -11.02299 -10.90089 -10.69860 -10.62056 -9.93927 -9.21261 -9.14400 -8.58369 -6.27743 1.00292 1.14676 1.35927 1.49310 1.52778 1.64442 1.87675 2.20525 2.34226 2.68228 2.80194 3.46294 3.55483 3.79226 3.92037 4.16221 4.25073 4.34469 4.39270 4.42831 4.44112 4.50920 4.57443 4.63280 4.65775 4.73204 4.83041 4.89791 5.07408 5.07748 5.18870 5.21772 5.23914 5.29532 5.38399 5.56458 5.70379 5.79301 5.93084 6.05647 6.18547 6.22912 6.43802 6.48489 6.70157 6.77639 7.01066 7.12975 7.37345 7.49575 8.38452 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003469 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.254291 B = 8070.210468 C = 9485.561771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.481 4.481 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.093 4.093 14 C -0.186 4.186 15 C -0.072 4.072 16 C 0.519 3.481 17 O -0.572 6.572 18 N -0.721 5.721 19 C 0.140 3.860 20 H 0.077 0.923 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.108 4.108 24 H 0.130 0.870 25 C 0.526 3.474 26 N -0.836 5.836 27 O -0.591 6.591 28 C -0.101 4.101 29 H 0.285 0.715 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.418 0.582 42 H 0.407 0.593 43 H 0.081 0.919 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.486 -3.117 -1.402 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.194 1.194 7 C -0.511 4.511 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.111 4.111 14 C -0.187 4.187 15 C -0.112 4.112 16 C 0.307 3.693 17 O -0.450 6.450 18 N -0.374 5.374 19 C 0.035 3.965 20 H 0.096 0.904 21 C -0.177 4.177 22 C -0.137 4.137 23 C -0.130 4.130 24 H 0.148 0.852 25 C 0.311 3.689 26 N -0.400 5.400 27 O -0.472 6.472 28 C -0.140 4.140 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.249 0.751 42 H 0.238 0.762 43 H 0.100 0.900 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.995 -3.286 -1.198 20.298 hybrid contribution 0.087 1.057 -0.062 1.062 sum 20.082 -2.229 -1.260 20.244 Atomic orbital electron populations 1.69893 1.08837 1.30110 1.36580 1.26673 0.95412 1.04195 0.91580 0.85322 0.79445 0.77020 0.78934 1.18476 1.18638 1.19389 1.19637 0.97129 0.91901 1.42396 0.91063 1.17739 0.91354 0.92828 0.88739 1.21302 1.00616 0.96789 1.02656 1.20945 0.99178 0.93393 1.00094 1.20718 1.01586 0.96762 1.07125 1.20742 0.95722 0.96667 0.97948 1.19542 1.00315 0.93445 1.05444 1.20296 0.89373 1.04463 0.97038 1.21067 0.85474 0.74166 0.88603 1.90648 1.87565 1.50068 1.16675 1.45985 1.04711 1.75931 1.10728 1.21801 0.83753 0.96295 0.94686 0.90437 1.22535 0.96558 0.96893 1.01756 1.22030 0.93906 0.94132 1.03638 1.22120 0.92125 0.99387 0.99373 0.85183 1.20685 0.85290 0.76019 0.86861 1.43734 1.12755 1.61760 1.21714 1.90737 1.84959 1.47940 1.23553 1.22528 0.91164 1.00780 0.99505 0.90420 0.88556 0.87703 0.86709 0.86611 0.87121 0.88647 0.75213 0.92250 0.92487 0.90887 0.88121 0.75057 0.76192 0.90037 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.36 10.97 21.83 0.24 -44.12 16 2 C 0.04 1.83 5.16 85.26 0.44 2.27 16 3 Si 0.97 39.32 29.59 68.60 2.03 41.35 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.48 -26.20 8.14 23.46 0.19 -26.01 16 8 H 0.07 3.78 6.68 -2.91 -0.02 3.76 16 9 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 10 C -0.19 -10.89 8.69 22.73 0.20 -10.70 16 11 C -0.12 -5.90 10.02 22.22 0.22 -5.67 16 12 C -0.24 -11.24 10.05 22.46 0.23 -11.01 16 13 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16 14 C -0.19 -9.06 4.43 -19.41 -0.09 -9.15 16 15 C -0.07 -2.80 5.18 29.10 0.15 -2.65 16 16 C 0.52 19.98 7.46 87.66 0.65 20.63 16 17 O -0.57 -27.51 15.71 -3.02 -0.05 -27.55 16 18 N -0.72 -20.36 5.10 -437.46 -2.23 -22.59 16 19 C 0.14 3.45 3.18 46.07 0.15 3.60 16 20 H 0.08 2.20 7.61 -2.39 -0.02 2.18 16 21 C -0.14 -3.24 6.54 31.32 0.20 -3.03 16 22 C -0.10 -1.41 6.30 31.32 0.20 -1.21 16 23 C -0.11 -1.55 3.24 -10.42 -0.03 -1.58 16 24 H 0.13 1.26 8.14 -2.38 -0.02 1.25 16 25 C 0.53 8.68 7.29 87.66 0.64 9.32 16 26 N -0.84 -6.67 8.81 -173.53 -1.53 -8.20 16 27 O -0.59 -15.53 16.61 -3.02 -0.05 -15.58 16 28 C -0.10 -1.95 5.53 31.93 0.18 -1.78 16 29 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 30 H 0.10 5.65 6.22 -2.91 -0.02 5.63 16 31 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 35 H 0.10 3.70 7.06 -2.39 -0.02 3.68 16 36 H 0.41 9.19 8.55 -92.70 -0.79 8.39 16 37 H 0.06 1.54 8.04 -2.39 -0.02 1.53 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.02 7.83 -2.39 -0.02 1.00 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.42 0.74 8.81 -92.71 -0.82 -0.07 16 42 H 0.41 2.69 8.93 -92.71 -0.83 1.87 16 43 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.08 1.67 7.41 -2.39 -0.02 1.65 16 Total: -1.00 -76.94 364.78 0.45 -76.49 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -1.38 Total: 36.00 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 3.42 Total: -35.80 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -3.52 Total: -74.91 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.10 Total: -43.14 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -76.94 0.45 -76.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361500117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.946 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds