Wall clock time and date at job start Tue Mar 31 2020 11:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47067 * 299.99983 * 3 2 1 6 6 H 1.48502 * 109.47172 * 59.99685 * 3 2 1 7 7 C 1.37880 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00208 * 185.09343 * 7 2 1 9 9 C 1.50698 * 119.99660 * 5.09482 * 7 2 1 10 10 H 1.08994 * 109.47233 * 185.76840 * 9 7 2 11 11 C 1.50708 * 109.47395 * 305.76928 * 9 7 2 12 12 O 1.21286 * 119.99847 * 119.99870 * 11 9 7 13 13 N 1.34770 * 119.99755 * 299.99980 * 11 9 7 14 14 C 1.46494 * 119.99877 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47452 * 180.02562 * 14 13 11 16 16 H 1.09010 * 109.40127 * 54.82307 * 15 14 13 17 17 C 1.53068 * 109.40587 * 174.57123 * 15 14 13 18 18 C 1.53346 * 108.43728 * 169.01467 * 17 15 14 19 19 C 1.52920 * 108.66180 * 292.46903 * 18 17 15 20 20 N 1.45754 * 110.49004 * 50.76923 * 19 18 17 21 21 C 1.33358 * 124.10323 * 340.90123 * 20 19 18 22 22 O 1.21281 * 118.24459 * 182.24091 * 21 20 19 23 23 C 1.50700 * 109.47071 * 65.76990 * 9 7 2 24 24 C 1.38239 * 120.00189 * 355.07142 * 23 9 7 25 25 C 1.38230 * 120.00203 * 179.97438 * 24 23 9 26 26 C 1.38239 * 119.99869 * 0.02562 * 25 24 23 27 27 C 1.38229 * 120.00166 * 359.96968 * 26 25 24 28 28 C 1.38230 * 120.00052 * 359.97438 * 27 26 25 29 29 H 0.97003 * 119.99925 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00274 * 0.02562 * 13 11 9 31 31 H 1.09003 * 109.47526 * 299.99992 * 14 13 11 32 32 H 1.08997 * 109.47472 * 60.00351 * 14 13 11 33 33 H 1.08997 * 109.67311 * 288.76203 * 17 15 14 34 34 H 1.08995 * 109.67332 * 49.29528 * 17 15 14 35 35 H 1.08992 * 109.59629 * 172.72659 * 18 17 15 36 36 H 1.09001 * 109.75949 * 52.30757 * 18 17 15 37 37 H 1.09003 * 109.30410 * 290.45925 * 19 18 17 38 38 H 1.09002 * 109.13607 * 170.97752 * 19 18 17 39 39 H 0.96996 * 117.94908 * 160.92146 * 20 19 18 40 40 H 1.07996 * 119.99544 * 0.25957 * 24 23 9 41 41 H 1.07996 * 120.00088 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99527 * 179.97438 * 26 25 24 43 43 H 1.08008 * 120.00234 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00021 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0836 9 6 1.2555 -2.4966 -0.1148 10 1 1.9506 -3.3274 0.0059 11 6 0.1992 -2.5654 0.9580 12 8 -0.9695 -2.6729 0.6523 13 7 0.5535 -2.5075 2.2571 14 6 -0.4732 -2.5738 3.2999 15 6 0.1907 -2.4870 4.6756 16 1 0.8067 -1.5889 4.7243 17 6 -0.8894 -2.4199 5.7582 18 6 -0.2194 -2.6114 7.1242 19 6 0.3072 -4.0443 7.2143 20 7 1.1086 -4.3681 6.0407 21 6 1.0545 -3.6966 4.8899 22 8 1.7393 -4.0836 3.9668 23 6 0.6014 -2.5817 -1.4698 24 6 0.6630 -1.5059 -2.3358 25 6 0.0635 -1.5841 -3.5789 26 6 -0.5980 -2.7380 -3.9559 27 6 -0.6594 -3.8137 -3.0900 28 6 -0.0590 -3.7359 -1.8474 29 1 -0.4850 0.8401 0.0004 30 1 1.4882 -2.4211 2.5015 31 1 -1.1681 -1.7427 3.1791 32 1 -1.0154 -3.5157 3.2166 33 1 -1.3830 -1.4488 5.7244 34 1 -1.6219 -3.2104 5.5951 35 1 -0.9481 -2.4392 7.9161 36 1 0.6084 -1.9103 7.2301 37 1 -0.5344 -4.7342 7.2774 38 1 0.9220 -4.1434 8.1090 39 1 1.7193 -5.1193 6.1005 40 1 1.1834 -0.6061 -2.0429 41 1 0.1113 -0.7436 -4.2553 42 1 -1.0667 -2.7989 -4.9270 43 1 -1.1766 -4.7151 -3.3844 44 1 -0.1074 -4.5763 -1.1707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362093526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:11 Heat of formation + Delta-G solvation = -50.700453 kcal Electronic energy + Delta-G solvation = -26993.469862 eV Core-core repulsion = 23296.237173 eV Total energy + Delta-G solvation = -3697.232689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44494 -38.68597 -37.27171 -36.47716 -34.63001 -33.55655 -32.13961 -30.77526 -29.97299 -29.56037 -27.37864 -25.65335 -23.84392 -23.26088 -22.19634 -21.15643 -20.34480 -19.36485 -18.70840 -17.29462 -16.72300 -16.30735 -15.97997 -15.33891 -15.14087 -14.88914 -14.60648 -14.21388 -14.09866 -13.85371 -13.62288 -13.58773 -13.11973 -12.97788 -12.33704 -12.28691 -12.15389 -12.00033 -11.67542 -11.47199 -11.38144 -11.20137 -11.06580 -10.94764 -10.87844 -10.64981 -10.26998 -9.98282 -9.60710 -9.57388 -9.25247 -9.13144 -8.54175 -8.12697 -7.68561 -7.66131 -7.30109 -6.07905 -4.20738 2.58961 2.68118 2.74735 3.21893 3.22954 3.32237 3.35588 4.25987 4.29160 4.48251 4.51675 4.55482 4.67177 4.81358 5.10095 5.14756 5.17143 5.24626 5.30321 5.45838 5.56399 5.63819 5.77955 5.90155 5.96760 6.02105 6.10671 6.28284 6.28841 6.46121 6.71351 6.74536 6.77812 6.93727 7.06328 7.18589 7.28964 7.31878 7.58954 7.70209 7.79743 7.81422 7.92702 8.24243 8.29748 8.37287 8.77506 9.07318 9.42745 9.97828 10.93006 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.004271 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.814033 B = 6553.851232 C = 7638.520698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.053 3.947 10 H 0.056 0.944 11 C 0.559 3.441 12 O -0.558 6.558 13 N -0.724 5.724 14 C 0.150 3.850 15 C -0.115 4.115 16 H 0.110 0.890 17 C -0.117 4.117 18 C -0.137 4.137 19 C 0.111 3.889 20 N -0.727 5.727 21 C 0.519 3.481 22 O -0.532 6.532 23 C -0.014 4.014 24 C -0.060 4.060 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.114 4.114 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.397 0.603 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -4.928 13.429 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.136 4.136 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.032 3.968 10 H 0.074 0.926 11 C 0.349 3.651 12 O -0.436 6.436 13 N -0.378 5.378 14 C 0.024 3.976 15 C -0.136 4.136 16 H 0.128 0.872 17 C -0.155 4.155 18 C -0.175 4.175 19 C -0.013 4.013 20 N -0.380 5.380 21 C 0.306 3.694 22 O -0.407 6.407 23 C -0.015 4.015 24 C -0.078 4.078 25 C -0.167 4.167 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.132 4.132 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.130 -4.882 12.693 13.647 hybrid contribution 0.812 0.871 0.425 1.264 sum -0.318 -4.012 13.118 13.721 Atomic orbital electron populations 1.70105 1.05248 1.26695 1.45901 1.25053 0.94888 0.99130 0.94574 0.86657 0.80473 0.83966 0.77828 1.19454 1.20693 1.21022 1.20816 0.93395 0.89006 1.53773 0.91477 1.17914 0.92679 0.98240 0.87958 0.92634 1.20718 0.89947 0.71995 0.82489 1.90506 1.20430 1.50270 1.82374 1.45679 1.09551 1.77418 1.05119 1.20796 0.91515 1.01318 0.83984 1.21550 0.97468 0.97187 0.97413 0.87232 1.21657 0.97383 1.03755 0.92735 1.21880 1.01277 0.95989 0.98305 1.21350 0.95304 0.96931 0.87759 1.45501 1.44587 1.34880 1.13057 1.20192 0.82709 0.84773 0.81733 1.90787 1.43201 1.67191 1.39534 1.19870 0.94346 0.91831 0.95418 1.21422 0.96304 0.98889 0.91196 1.21053 1.00940 0.97203 0.97529 1.20773 1.02023 0.94612 0.98925 1.20769 1.02033 0.98143 0.95193 1.20891 0.98596 0.98290 0.95424 0.92578 0.76283 0.91476 0.93071 0.90055 0.90791 0.89751 0.90832 0.91831 0.90848 0.76822 0.84638 0.88049 0.88173 0.88052 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.32 10.42 55.43 0.58 -22.74 16 2 C 0.07 1.80 3.19 -17.82 -0.06 1.75 16 3 Si 0.88 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -13.71 7.61 -34.44 -0.26 -13.97 16 8 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.05 1.36 2.67 -94.07 -0.25 1.11 16 10 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 11 C 0.56 14.34 5.37 -10.98 -0.06 14.28 16 12 O -0.56 -15.91 15.15 5.55 0.08 -15.83 16 13 N -0.72 -15.92 4.64 -60.30 -0.28 -16.20 16 14 C 0.15 2.73 4.94 -4.04 -0.02 2.71 16 15 C -0.11 -1.55 2.51 -91.99 -0.23 -1.78 16 16 H 0.11 1.47 8.14 -51.92 -0.42 1.05 16 17 C -0.12 -1.12 5.33 -26.52 -0.14 -1.26 16 18 C -0.14 -0.94 6.02 -26.59 -0.16 -1.10 16 19 C 0.11 0.75 7.17 -4.49 -0.03 0.71 16 20 N -0.73 -7.40 5.45 -61.39 -0.33 -7.73 16 21 C 0.52 7.40 7.29 -11.87 -0.09 7.31 16 22 O -0.53 -9.86 15.24 5.56 0.08 -9.78 16 23 C -0.01 -0.35 4.50 -104.62 -0.47 -0.82 16 24 C -0.06 -1.50 8.00 -39.58 -0.32 -1.82 16 25 C -0.15 -3.30 10.05 -39.58 -0.40 -3.70 16 26 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 27 C -0.14 -3.03 10.05 -39.59 -0.40 -3.43 16 28 C -0.11 -2.68 8.74 -39.58 -0.35 -3.02 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.40 8.70 7.03 -40.82 -0.29 8.42 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.40 3.67 8.80 -40.82 -0.36 3.31 16 40 H 0.14 3.54 4.98 -52.49 -0.26 3.27 16 41 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -33.34 355.76 -9.52 -42.87 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -6.37 Total: 15.41 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.63 Total: -6.42 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.04 Total: -46.67 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.17 Total: -25.61 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.34 -9.52 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362093526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.835 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds