Wall clock time and date at job start Tue Mar 31 2020 11:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47067 * 299.99983 * 3 2 1 6 6 H 1.48502 * 109.47172 * 59.99685 * 3 2 1 7 7 C 1.37880 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00208 * 185.09343 * 7 2 1 9 9 C 1.50698 * 119.99660 * 5.09482 * 7 2 1 10 10 H 1.08994 * 109.47233 * 185.76840 * 9 7 2 11 11 C 1.50708 * 109.47395 * 305.76928 * 9 7 2 12 12 O 1.21286 * 119.99847 * 119.99870 * 11 9 7 13 13 N 1.34770 * 119.99755 * 299.99980 * 11 9 7 14 14 C 1.46494 * 119.99877 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47452 * 180.02562 * 14 13 11 16 16 H 1.09010 * 109.40127 * 54.82307 * 15 14 13 17 17 C 1.53068 * 109.40587 * 174.57123 * 15 14 13 18 18 C 1.53346 * 108.43728 * 169.01467 * 17 15 14 19 19 C 1.52920 * 108.66180 * 292.46903 * 18 17 15 20 20 N 1.45754 * 110.49004 * 50.76923 * 19 18 17 21 21 C 1.33358 * 124.10323 * 340.90123 * 20 19 18 22 22 O 1.21281 * 118.24459 * 182.24091 * 21 20 19 23 23 C 1.50700 * 109.47071 * 65.76990 * 9 7 2 24 24 C 1.38239 * 120.00189 * 355.07142 * 23 9 7 25 25 C 1.38230 * 120.00203 * 179.97438 * 24 23 9 26 26 C 1.38239 * 119.99869 * 0.02562 * 25 24 23 27 27 C 1.38229 * 120.00166 * 359.96968 * 26 25 24 28 28 C 1.38230 * 120.00052 * 359.97438 * 27 26 25 29 29 H 0.97003 * 119.99925 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00274 * 0.02562 * 13 11 9 31 31 H 1.09003 * 109.47526 * 299.99992 * 14 13 11 32 32 H 1.08997 * 109.47472 * 60.00351 * 14 13 11 33 33 H 1.08997 * 109.67311 * 288.76203 * 17 15 14 34 34 H 1.08995 * 109.67332 * 49.29528 * 17 15 14 35 35 H 1.08992 * 109.59629 * 172.72659 * 18 17 15 36 36 H 1.09001 * 109.75949 * 52.30757 * 18 17 15 37 37 H 1.09003 * 109.30410 * 290.45925 * 19 18 17 38 38 H 1.09002 * 109.13607 * 170.97752 * 19 18 17 39 39 H 0.96996 * 117.94908 * 160.92146 * 20 19 18 40 40 H 1.07996 * 119.99544 * 0.25957 * 24 23 9 41 41 H 1.07996 * 120.00088 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99527 * 179.97438 * 26 25 24 43 43 H 1.08008 * 120.00234 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00021 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0836 9 6 1.2555 -2.4966 -0.1148 10 1 1.9506 -3.3274 0.0059 11 6 0.1992 -2.5654 0.9580 12 8 -0.9695 -2.6729 0.6523 13 7 0.5535 -2.5075 2.2571 14 6 -0.4732 -2.5738 3.2999 15 6 0.1907 -2.4870 4.6756 16 1 0.8067 -1.5889 4.7243 17 6 -0.8894 -2.4199 5.7582 18 6 -0.2194 -2.6114 7.1242 19 6 0.3072 -4.0443 7.2143 20 7 1.1086 -4.3681 6.0407 21 6 1.0545 -3.6966 4.8899 22 8 1.7393 -4.0836 3.9668 23 6 0.6014 -2.5817 -1.4698 24 6 0.6630 -1.5059 -2.3358 25 6 0.0635 -1.5841 -3.5789 26 6 -0.5980 -2.7380 -3.9559 27 6 -0.6594 -3.8137 -3.0900 28 6 -0.0590 -3.7359 -1.8474 29 1 -0.4850 0.8401 0.0004 30 1 1.4882 -2.4211 2.5015 31 1 -1.1681 -1.7427 3.1791 32 1 -1.0154 -3.5157 3.2166 33 1 -1.3830 -1.4488 5.7244 34 1 -1.6219 -3.2104 5.5951 35 1 -0.9481 -2.4392 7.9161 36 1 0.6084 -1.9103 7.2301 37 1 -0.5344 -4.7342 7.2774 38 1 0.9220 -4.1434 8.1090 39 1 1.7193 -5.1193 6.1005 40 1 1.1834 -0.6061 -2.0429 41 1 0.1113 -0.7436 -4.2553 42 1 -1.0667 -2.7989 -4.9270 43 1 -1.1766 -4.7151 -3.3844 44 1 -0.1074 -4.5763 -1.1707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362093526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:10 Heat of formation + Delta-G solvation = -73.442422 kcal Electronic energy + Delta-G solvation = -26994.456027 eV Core-core repulsion = 23296.237173 eV Total energy + Delta-G solvation = -3698.218855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54722 -40.52028 -39.07033 -37.45085 -36.03904 -35.52915 -33.45136 -32.67264 -31.34010 -31.04492 -29.12719 -26.94365 -25.62028 -24.40541 -23.21360 -22.92184 -22.08615 -20.92338 -19.97488 -18.67907 -18.19610 -17.63741 -17.40103 -17.01143 -16.73898 -16.59598 -16.01518 -15.64085 -15.49901 -15.29355 -15.06761 -14.72006 -14.40927 -14.33048 -14.08660 -14.00687 -13.77223 -13.67665 -13.17384 -13.00943 -12.73755 -12.60211 -12.47831 -12.23428 -12.15357 -12.00758 -11.86989 -11.78751 -11.45611 -11.17188 -10.70544 -10.55243 -10.13385 -9.99854 -9.51327 -9.45258 -9.11633 -8.08447 -6.27046 0.81725 0.91581 1.39397 1.44304 1.54531 1.62175 2.33473 2.36539 2.52701 2.83301 3.17296 3.33043 3.57852 3.65180 3.86946 3.93213 4.25094 4.27218 4.28971 4.33653 4.47743 4.56896 4.61311 4.64330 4.69860 4.81891 4.85401 4.95027 4.97846 5.07624 5.09729 5.13235 5.15752 5.34319 5.41110 5.54881 5.69049 5.84371 5.89258 5.93845 5.97356 6.07029 6.33591 6.41135 6.50542 6.76282 7.16346 7.27271 7.39370 8.01568 8.91863 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.004271 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.814033 B = 6553.851232 C = 7638.520698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.045 3.955 10 H 0.051 0.949 11 C 0.556 3.444 12 O -0.594 6.594 13 N -0.717 5.717 14 C 0.149 3.851 15 C -0.106 4.106 16 H 0.110 0.890 17 C -0.114 4.114 18 C -0.131 4.131 19 C 0.103 3.897 20 N -0.713 5.713 21 C 0.515 3.485 22 O -0.587 6.587 23 C -0.039 4.039 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.133 4.133 29 H 0.259 0.741 30 H 0.402 0.598 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.403 0.597 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -4.833 14.563 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.023 3.977 10 H 0.069 0.931 11 C 0.345 3.655 12 O -0.475 6.475 13 N -0.369 5.369 14 C 0.025 3.975 15 C -0.128 4.128 16 H 0.127 0.873 17 C -0.152 4.152 18 C -0.168 4.168 19 C -0.020 4.020 20 N -0.364 5.364 21 C 0.302 3.698 22 O -0.467 6.467 23 C -0.040 4.040 24 C -0.104 4.104 25 C -0.171 4.171 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.238 0.762 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.154 0.846 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.564 -4.804 13.912 14.801 hybrid contribution 0.929 0.756 0.103 1.201 sum -0.635 -4.048 14.015 14.602 Atomic orbital electron populations 1.70259 1.06659 1.26891 1.47021 1.25567 0.95307 1.01677 0.93853 0.85726 0.79516 0.80239 0.77630 1.18828 1.20623 1.20795 1.20921 0.93244 0.89580 1.53794 0.91709 1.17998 0.92816 0.98038 0.88821 0.93066 1.20783 0.89397 0.71650 0.83630 1.90456 1.21619 1.52315 1.83124 1.45666 1.10357 1.75897 1.05003 1.20897 0.90868 1.00026 0.85758 1.21460 0.98487 0.97064 0.95739 0.87259 1.21695 0.96212 1.04346 0.92925 1.21908 1.01846 0.96003 0.97067 1.21721 0.95987 0.97256 0.87035 1.45493 1.44170 1.33919 1.12804 1.20278 0.82228 0.85000 0.82284 1.90762 1.45486 1.68762 1.41692 1.19951 0.95707 0.92971 0.95391 1.21379 0.97962 0.98285 0.92822 1.21375 1.00195 0.98810 0.96760 1.21221 1.00685 0.93344 1.00377 1.21186 1.00894 0.99752 0.94007 1.21021 0.99474 0.97791 0.96841 0.93140 0.76211 0.92904 0.94112 0.89334 0.90645 0.86612 0.90773 0.90236 0.87716 0.76152 0.86530 0.85591 0.83911 0.84560 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.63 10.42 21.45 0.22 -49.40 16 2 C 0.04 2.09 3.19 84.66 0.27 2.36 16 3 Si 0.94 41.92 29.54 68.60 2.03 43.94 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -28.72 7.61 25.60 0.19 -28.53 16 8 H 0.06 3.40 7.82 -2.92 -0.02 3.37 16 9 C 0.04 2.38 2.67 -13.03 -0.03 2.35 16 10 H 0.05 2.66 8.14 -2.39 -0.02 2.65 16 11 C 0.56 29.95 5.37 87.66 0.47 30.42 16 12 O -0.59 -35.48 15.15 -3.05 -0.05 -35.53 16 13 N -0.72 -33.25 4.64 -463.07 -2.15 -35.40 16 14 C 0.15 5.71 4.94 86.38 0.43 6.14 16 15 C -0.11 -2.88 2.51 -11.68 -0.03 -2.91 16 16 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 17 C -0.11 -1.99 5.33 30.73 0.16 -1.82 16 18 C -0.13 -1.35 6.02 30.68 0.18 -1.17 16 19 C 0.10 1.02 7.17 86.49 0.62 1.64 16 20 N -0.71 -13.38 5.45 -467.31 -2.55 -15.93 16 21 C 0.52 14.73 7.29 87.71 0.64 15.37 16 22 O -0.59 -22.65 15.24 -3.03 -0.05 -22.70 16 23 C -0.04 -2.06 4.50 -19.86 -0.09 -2.15 16 24 C -0.09 -4.40 8.00 22.27 0.18 -4.22 16 25 C -0.15 -6.63 10.05 22.27 0.22 -6.41 16 26 C -0.14 -5.36 10.05 22.27 0.22 -5.13 16 27 C -0.14 -5.72 10.05 22.27 0.22 -5.50 16 28 C -0.13 -6.38 8.74 22.27 0.19 -6.18 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.40 18.43 7.03 -92.71 -0.65 17.78 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.40 6.89 8.80 -92.71 -0.82 6.07 16 40 H 0.12 6.27 4.98 -2.91 -0.01 6.26 16 41 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -76.04 355.76 0.88 -75.16 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.44 Total: 45.58 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.86 Total: -5.73 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.47 Total: -100.73 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -0.09 Total: -58.23 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.04 0.88 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362093526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds