Wall clock time and date at job start Tue Mar 31 2020 12:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38264 * 119.99900 * 2 1 4 4 C 1.38206 * 120.00170 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00325 * 359.95909 * 4 3 2 6 6 C 1.50696 * 120.00592 * 180.02562 * 5 4 3 7 7 C 1.53005 * 110.53298 * 3.43322 * 6 5 4 8 8 N 1.47315 * 110.59892 * 240.61039 * 6 5 4 9 9 C 1.34526 * 106.61784 * 241.47302 * 8 6 5 10 10 O 1.21537 * 123.77525 * 180.02562 * 9 8 6 11 11 N 1.33792 * 112.45754 * 359.97438 * 9 8 6 12 12 C 1.46503 * 124.17965 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47142 * 90.02554 * 12 11 9 14 14 C 1.50697 * 109.46924 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00528 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99932 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00261 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47206 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47115 * 300.00085 * 18 16 14 21 21 H 1.48494 * 109.47099 * 60.00544 * 18 16 14 22 22 C 1.34770 * 111.64622 * 0.23360 * 11 9 8 23 23 O 1.21231 * 127.16147 * 179.73333 * 22 11 9 24 24 C 1.38216 * 119.99329 * 0.27268 * 5 4 3 25 25 C 1.50708 * 119.99735 * 179.72774 * 24 5 4 26 26 C 1.38210 * 120.00279 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47088 * 90.00401 * 1 2 3 28 28 H 1.09005 * 109.47382 * 210.00033 * 1 2 3 29 29 H 1.09000 * 109.47586 * 330.00107 * 1 2 3 30 30 H 1.08005 * 119.99980 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00068 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47096 * 297.87648 * 7 6 5 33 33 H 1.09006 * 109.46785 * 57.87313 * 7 6 5 34 34 H 1.08998 * 109.47072 * 177.87333 * 7 6 5 35 35 H 0.97005 * 126.69217 * 61.50283 * 8 6 5 36 36 H 1.09003 * 109.46918 * 330.02252 * 12 11 9 37 37 H 1.08999 * 109.47098 * 210.02425 * 12 11 9 38 38 H 1.08999 * 109.47243 * 60.00496 * 13 12 11 39 39 H 1.08999 * 109.47018 * 299.99920 * 13 12 11 40 40 H 0.96997 * 120.00390 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.47022 * 82.33565 * 25 24 5 42 42 H 1.09001 * 109.46857 * 202.33638 * 25 24 5 43 43 H 1.09005 * 109.46731 * 322.33388 * 25 24 5 44 44 H 1.07995 * 119.99807 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0002 6 6 5.7787 0.0002 -0.0002 7 6 6.3153 1.4305 0.0852 8 7 6.2970 -0.6769 -1.2015 9 6 7.0086 -1.7340 -0.7705 10 8 7.5778 -2.5123 -1.5104 11 7 7.0206 -1.8323 0.5637 12 6 7.7168 -2.8868 1.3051 13 6 9.1458 -2.4353 1.6133 14 6 9.8620 -3.5203 2.3753 15 1 9.3495 -4.4401 2.6154 16 6 11.1721 -3.3391 2.7651 17 7 11.7965 -2.2193 2.4723 18 14 12.0598 -4.6838 3.7103 19 1 13.4468 -4.2457 4.0094 20 1 11.3409 -4.9522 4.9818 21 1 12.0971 -5.9222 2.8918 22 6 6.3085 -0.8446 1.1414 23 8 6.1299 -0.6678 2.3274 24 6 3.5806 -1.1968 -0.0051 25 6 4.3342 -2.5019 -0.0109 26 6 2.1980 -1.1969 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1328 -0.0004 31 1 4.1203 2.1329 -0.0010 32 1 5.9928 1.9925 -0.7913 33 1 5.9309 1.9096 0.9857 34 1 7.4045 1.4083 0.1221 35 1 6.1535 -0.4118 -2.1236 36 1 7.7446 -3.7957 0.7041 37 1 7.1889 -3.0841 2.2381 38 1 9.1180 -1.5264 2.2143 39 1 9.6736 -2.2379 0.6803 40 1 12.7180 -2.0917 2.7469 41 1 4.6349 -2.7523 1.0063 42 1 3.6925 -3.2902 -0.4046 43 1 5.2201 -2.4070 -0.6389 44 1 1.6581 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057850006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:31 Heat of formation + Delta-G solvation = -15.208113 kcal Electronic energy + Delta-G solvation = -27190.063754 eV Core-core repulsion = 23494.370128 eV Total energy + Delta-G solvation = -3695.693626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.74688 -39.64029 -38.24695 -36.34928 -35.28748 -33.48069 -33.20185 -32.48087 -30.27180 -29.86418 -27.53451 -26.77773 -25.65205 -24.37196 -22.58745 -22.05515 -21.53708 -20.30727 -19.86685 -17.76082 -17.08969 -16.77776 -16.26498 -15.58453 -15.47907 -15.37010 -14.87185 -14.75521 -14.49481 -14.38548 -13.93951 -13.75716 -13.30889 -13.28350 -13.03932 -12.94052 -12.64088 -12.59066 -12.36221 -12.11812 -12.06601 -11.80954 -11.56431 -11.33997 -11.16004 -10.94151 -10.88314 -10.54336 -10.14870 -10.08785 -9.79701 -9.41421 -9.26893 -8.95296 -8.87823 -8.69657 -8.38255 -6.03269 -4.07171 0.96924 1.18661 1.89019 2.61003 3.24598 3.34450 3.36044 3.38145 3.41188 3.48594 4.12486 4.33173 4.45123 4.48562 4.62517 4.65608 4.76366 5.09669 5.10362 5.26215 5.29817 5.33168 5.33827 5.41256 5.45721 5.50743 5.54327 5.57759 5.71387 5.83055 5.89617 5.98281 6.07881 6.14287 6.18430 6.30237 6.34135 6.39670 6.65221 6.76455 6.91735 7.35445 7.57637 7.69559 7.72429 7.93320 8.27957 8.43379 8.97616 9.56798 11.08401 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.003333 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.908026 B = 8398.308028 C = 8525.539230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.097 4.097 6 C 0.163 3.837 7 C -0.148 4.148 8 N -0.726 5.726 9 C 0.706 3.294 10 O -0.537 6.537 11 N -0.571 5.571 12 C 0.119 3.881 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.275 1.275 22 C 0.535 3.465 23 O -0.459 6.459 24 C -0.052 4.052 25 C -0.141 4.141 26 C -0.121 4.121 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.435 0.565 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.883 8.570 -7.778 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.098 4.098 6 C 0.072 3.928 7 C -0.206 4.206 8 N -0.391 5.391 9 C 0.408 3.592 10 O -0.410 6.410 11 N -0.316 5.316 12 C 0.000 4.000 13 C -0.025 4.025 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.212 1.212 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.320 3.680 23 O -0.328 6.328 24 C -0.052 4.052 25 C -0.198 4.198 26 C -0.139 4.139 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.279 0.721 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.403 8.221 -7.413 24.096 hybrid contribution 0.568 -0.510 0.104 0.771 sum -20.834 7.711 -7.309 23.387 Atomic orbital electron populations 1.20807 0.91089 1.02917 1.02350 1.19971 0.96122 0.93147 0.98270 1.20975 0.93850 0.97581 1.02282 1.21088 0.94178 0.97344 0.98170 1.19265 0.91937 0.93746 1.04854 1.20099 0.91873 0.95593 0.85223 1.22046 1.02780 0.91876 1.03927 1.45778 1.55312 1.29427 1.08556 1.15743 0.79023 0.81922 0.82522 1.91024 1.47809 1.44768 1.57378 1.46812 1.48351 1.28998 1.07436 1.22220 0.95767 0.87358 0.94653 1.19399 0.88028 0.97529 0.97523 1.20957 0.97233 1.01888 1.36065 0.92275 1.24991 0.97449 0.95751 0.95984 1.69958 1.11874 1.24891 1.46327 0.86569 0.78619 0.81974 0.80334 1.21237 1.20101 1.20081 1.20396 0.77497 0.80934 0.89171 1.90774 1.56997 1.70398 1.14624 1.19759 0.93880 0.94597 0.96983 1.21375 1.01033 0.94200 1.03147 1.20893 0.92993 0.97830 1.02167 0.91084 0.91461 0.91417 0.85757 0.84991 0.90221 0.89624 0.90547 0.72133 0.89608 0.89897 0.96066 0.95749 0.92790 0.90581 0.90915 0.90443 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.07 -0.69 5.88 -104.63 -0.62 -1.30 16 3 C -0.13 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.09 -0.87 9.04 -39.59 -0.36 -1.23 16 5 C -0.10 -1.16 5.11 -104.62 -0.53 -1.69 16 6 C 0.16 2.15 1.09 -133.24 -0.15 2.00 16 7 C -0.15 -1.58 7.63 37.16 0.28 -1.30 16 8 N -0.73 -9.60 5.15 -54.02 -0.28 -9.88 16 9 C 0.71 12.61 5.97 -88.02 -0.53 12.08 16 10 O -0.54 -11.36 17.48 5.33 0.09 -11.27 16 11 N -0.57 -10.79 1.80 -120.73 -0.22 -11.01 16 12 C 0.12 2.56 5.64 -4.04 -0.02 2.54 16 13 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.53 9.42 4.98 -10.55 -0.05 9.36 16 23 O -0.46 -9.26 17.75 5.60 0.10 -9.16 16 24 C -0.05 -0.64 5.74 -104.62 -0.60 -1.24 16 25 C -0.14 -1.85 8.03 36.01 0.29 -1.57 16 26 C -0.12 -1.27 9.33 -39.58 -0.37 -1.64 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 31 H 0.13 1.00 6.02 -52.48 -0.32 0.68 16 32 H 0.08 0.60 7.56 -51.93 -0.39 0.21 16 33 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.43 4.49 8.96 -40.82 -0.37 4.12 16 36 H 0.09 1.82 7.86 -51.93 -0.41 1.41 16 37 H 0.08 1.73 8.00 -51.93 -0.42 1.31 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 1.11 7.31 -51.93 -0.38 0.73 16 42 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 43 H 0.08 1.13 3.22 -51.93 -0.17 0.96 16 44 H 0.12 1.10 8.05 -52.49 -0.42 0.67 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.42 359.83 -8.57 -42.99 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.17 Total: 1.75 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.23 Total: 0.74 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.24 Total: -47.30 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.19 Total: -20.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.42 -8.57 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.787 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds