Wall clock time and date at job start Tue Mar 31 2020 12:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38264 * 119.99900 * 2 1 4 4 C 1.38206 * 120.00170 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00325 * 359.95909 * 4 3 2 6 6 C 1.50696 * 120.00592 * 180.02562 * 5 4 3 7 7 C 1.53005 * 110.53298 * 3.43322 * 6 5 4 8 8 N 1.47315 * 110.59892 * 240.61039 * 6 5 4 9 9 C 1.34526 * 106.61784 * 241.47302 * 8 6 5 10 10 O 1.21537 * 123.77525 * 180.02562 * 9 8 6 11 11 N 1.33792 * 112.45754 * 359.97438 * 9 8 6 12 12 C 1.46503 * 124.17965 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47142 * 90.02554 * 12 11 9 14 14 C 1.50697 * 109.46924 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00528 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99932 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00261 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47206 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47115 * 300.00085 * 18 16 14 21 21 H 1.48494 * 109.47099 * 60.00544 * 18 16 14 22 22 C 1.34770 * 111.64622 * 0.23360 * 11 9 8 23 23 O 1.21231 * 127.16147 * 179.73333 * 22 11 9 24 24 C 1.38216 * 119.99329 * 0.27268 * 5 4 3 25 25 C 1.50708 * 119.99735 * 179.72774 * 24 5 4 26 26 C 1.38210 * 120.00279 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47088 * 90.00401 * 1 2 3 28 28 H 1.09005 * 109.47382 * 210.00033 * 1 2 3 29 29 H 1.09000 * 109.47586 * 330.00107 * 1 2 3 30 30 H 1.08005 * 119.99980 * 359.97438 * 3 2 1 31 31 H 1.08005 * 120.00068 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47096 * 297.87648 * 7 6 5 33 33 H 1.09006 * 109.46785 * 57.87313 * 7 6 5 34 34 H 1.08998 * 109.47072 * 177.87333 * 7 6 5 35 35 H 0.97005 * 126.69217 * 61.50283 * 8 6 5 36 36 H 1.09003 * 109.46918 * 330.02252 * 12 11 9 37 37 H 1.08999 * 109.47098 * 210.02425 * 12 11 9 38 38 H 1.08999 * 109.47243 * 60.00496 * 13 12 11 39 39 H 1.08999 * 109.47018 * 299.99920 * 13 12 11 40 40 H 0.96997 * 120.00390 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.47022 * 82.33565 * 25 24 5 42 42 H 1.09001 * 109.46857 * 202.33638 * 25 24 5 43 43 H 1.09005 * 109.46731 * 322.33388 * 25 24 5 44 44 H 1.07995 * 119.99807 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0002 6 6 5.7787 0.0002 -0.0002 7 6 6.3153 1.4305 0.0852 8 7 6.2970 -0.6769 -1.2015 9 6 7.0086 -1.7340 -0.7705 10 8 7.5778 -2.5123 -1.5104 11 7 7.0206 -1.8323 0.5637 12 6 7.7168 -2.8868 1.3051 13 6 9.1458 -2.4353 1.6133 14 6 9.8620 -3.5203 2.3753 15 1 9.3495 -4.4401 2.6154 16 6 11.1721 -3.3391 2.7651 17 7 11.7965 -2.2193 2.4723 18 14 12.0598 -4.6838 3.7103 19 1 13.4468 -4.2457 4.0094 20 1 11.3409 -4.9522 4.9818 21 1 12.0971 -5.9222 2.8918 22 6 6.3085 -0.8446 1.1414 23 8 6.1299 -0.6678 2.3274 24 6 3.5806 -1.1968 -0.0051 25 6 4.3342 -2.5019 -0.0109 26 6 2.1980 -1.1969 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6582 2.1328 -0.0004 31 1 4.1203 2.1329 -0.0010 32 1 5.9928 1.9925 -0.7913 33 1 5.9309 1.9096 0.9857 34 1 7.4045 1.4083 0.1221 35 1 6.1535 -0.4118 -2.1236 36 1 7.7446 -3.7957 0.7041 37 1 7.1889 -3.0841 2.2381 38 1 9.1180 -1.5264 2.2143 39 1 9.6736 -2.2379 0.6803 40 1 12.7180 -2.0917 2.7469 41 1 4.6349 -2.7523 1.0063 42 1 3.6925 -3.2902 -0.4046 43 1 5.2201 -2.4070 -0.6389 44 1 1.6581 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057850006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:27 Heat of formation + Delta-G solvation = -37.205735 kcal Electronic energy + Delta-G solvation = -27191.017643 eV Core-core repulsion = 23494.370128 eV Total energy + Delta-G solvation = -3696.647514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -44.07531 -40.54048 -39.71254 -37.62490 -36.92488 -35.19756 -34.22378 -33.66103 -31.87519 -31.08206 -28.33138 -27.64158 -27.47658 -25.68050 -24.07522 -23.53893 -22.48485 -21.47289 -21.20442 -19.18971 -18.66616 -18.14915 -17.80477 -16.83268 -16.63994 -16.54198 -16.45383 -16.31662 -15.68816 -15.63856 -14.97542 -14.77973 -14.70270 -14.51876 -14.18173 -14.11112 -13.93724 -13.66902 -13.48615 -13.36506 -12.98818 -12.87230 -12.84958 -12.80303 -12.59224 -12.23054 -12.14062 -12.11918 -11.98942 -11.89959 -11.47270 -11.21831 -10.72036 -10.62705 -10.51427 -9.72958 -9.51038 -8.26612 -6.40025 0.13412 0.42336 0.49761 1.24266 1.39731 1.43667 1.51387 1.90868 2.04107 2.38613 2.60275 3.02934 3.07419 3.29369 3.58557 3.77490 3.91622 3.95293 4.05919 4.28109 4.36013 4.38894 4.43556 4.45470 4.47823 4.51113 4.60301 4.66919 4.70459 4.74075 4.81738 4.88238 4.95444 5.03975 5.17131 5.27624 5.32363 5.38743 5.42826 5.55406 5.65858 5.69379 5.74101 6.02848 6.03864 6.05481 6.31844 6.73368 7.03939 7.29730 8.86112 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.003333 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.908026 B = 8398.308028 C = 8525.539230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.086 4.086 5 C -0.115 4.115 6 C 0.175 3.825 7 C -0.148 4.148 8 N -0.699 5.699 9 C 0.705 3.295 10 O -0.577 6.577 11 N -0.580 5.580 12 C 0.134 3.866 13 C 0.026 3.974 14 C -0.547 4.547 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.974 3.026 19 H -0.281 1.281 20 H -0.263 1.263 21 H -0.264 1.264 22 C 0.527 3.473 23 O -0.492 6.492 24 C -0.073 4.073 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.451 0.549 36 H 0.088 0.912 37 H 0.088 0.912 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.266 0.734 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.215 9.679 -8.074 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.116 4.116 6 C 0.085 3.915 7 C -0.206 4.206 8 N -0.365 5.365 9 C 0.408 3.592 10 O -0.453 6.453 11 N -0.324 5.324 12 C 0.014 3.986 13 C -0.012 4.012 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.797 3.203 19 H -0.207 1.207 20 H -0.188 1.188 21 H -0.189 1.189 22 C 0.315 3.685 23 O -0.363 6.363 24 C -0.074 4.074 25 C -0.194 4.194 26 C -0.149 4.149 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.298 0.702 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.785 9.374 -7.741 26.712 hybrid contribution 1.183 -0.791 0.189 1.435 sum -22.603 8.583 -7.552 25.329 Atomic orbital electron populations 1.20872 0.88982 1.03824 1.03395 1.20368 0.97730 0.92748 0.96592 1.21383 0.93605 0.98734 1.00758 1.21387 0.94835 0.97262 0.96907 1.19213 0.90510 0.94800 1.07112 1.20148 0.93170 0.95711 0.82437 1.22161 1.01676 0.90268 1.06460 1.45632 1.53554 1.27638 1.09655 1.15805 0.79092 0.82524 0.81814 1.90986 1.49808 1.46510 1.58000 1.46752 1.48501 1.29061 1.08105 1.21743 0.93251 0.88205 0.95428 1.19154 0.90785 0.96170 0.95043 1.21434 0.98049 1.02685 1.36395 0.91095 1.26043 0.98378 0.98397 0.96875 1.70105 1.12364 1.27167 1.47467 0.85371 0.77189 0.78661 0.79056 1.20674 1.18793 1.18900 1.21233 0.76612 0.80742 0.89957 1.90736 1.58100 1.71166 1.16283 1.19799 0.94821 0.94054 0.98682 1.21280 1.00869 0.95890 1.01389 1.21084 0.92320 0.99195 1.02284 0.89831 0.91168 0.89989 0.82697 0.82438 0.86058 0.88578 0.92287 0.70159 0.89414 0.89359 0.99152 0.99181 0.92532 0.92889 0.89471 0.92126 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.23 0.71 -0.34 16 2 C -0.07 -1.13 5.88 -19.87 -0.12 -1.25 16 3 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 4 C -0.09 -1.38 9.04 22.27 0.20 -1.18 16 5 C -0.12 -2.57 5.11 -19.87 -0.10 -2.67 16 6 C 0.18 4.52 1.09 2.24 0.00 4.52 16 7 C -0.15 -2.88 7.63 71.98 0.55 -2.33 16 8 N -0.70 -18.37 5.15 -443.25 -2.28 -20.66 16 9 C 0.71 26.21 5.97 179.44 1.07 27.28 16 10 O -0.58 -25.54 17.48 -3.83 -0.07 -25.61 16 11 N -0.58 -23.08 1.80 -773.12 -1.39 -24.47 16 12 C 0.13 6.13 5.64 86.38 0.49 6.62 16 13 C 0.03 1.49 5.30 29.85 0.16 1.65 16 14 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 15 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 18 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.53 19.20 4.98 87.94 0.44 19.63 16 23 O -0.49 -20.64 17.75 -2.88 -0.05 -20.69 16 24 C -0.07 -1.74 5.74 -19.86 -0.11 -1.86 16 25 C -0.14 -3.72 8.03 71.24 0.57 -3.14 16 26 C -0.13 -2.52 9.33 22.27 0.21 -2.32 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.63 8.09 -2.38 -0.02 0.61 16 29 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.16 1.65 6.02 -2.91 -0.02 1.63 16 32 H 0.12 1.36 7.56 -2.39 -0.02 1.35 16 33 H 0.10 1.72 7.62 -2.38 -0.02 1.70 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.45 8.80 8.96 -92.70 -0.83 7.97 16 36 H 0.09 3.93 7.86 -2.39 -0.02 3.91 16 37 H 0.09 3.89 8.00 -2.39 -0.02 3.87 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.05 1.64 7.31 -2.39 -0.02 1.62 16 42 H 0.09 1.98 8.03 -2.39 -0.02 1.96 16 43 H 0.06 1.83 3.22 -2.38 -0.01 1.82 16 44 H 0.13 2.18 8.05 -2.91 -0.02 2.16 16 Total: -1.00 -78.74 359.83 3.70 -75.04 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.20 Total: 15.66 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.98 Total: 11.64 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.39 Total: -103.28 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.12 Total: -46.30 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.74 3.70 -75.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.833 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds