Wall clock time and date at job start Tue Mar 31 2020 10:49:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31562 * 1
3 3 Si 1.86800 * 120.00041 * 2 1
4 4 H 1.48497 * 109.47095 * 269.99665 * 3 2 1
5 5 H 1.48502 * 109.46978 * 29.99458 * 3 2 1
6 6 H 1.48499 * 109.47175 * 149.99464 * 3 2 1
7 7 C 1.38649 * 119.99794 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99596 * 180.02562 * 7 2 1
9 9 O 1.34830 * 120.00285 * 0.02562 * 7 2 1
10 10 C 1.35746 * 117.00021 * 174.97332 * 9 7 2
11 11 C 1.38955 * 120.03399 * 185.37207 * 10 9 7
12 12 C 1.38124 * 120.06882 * 180.02562 * 11 10 9
13 13 C 1.38198 * 120.13977 * 359.97438 * 12 11 10
14 14 C 1.38918 * 120.07012 * 359.97438 * 13 12 11
15 15 N 1.39941 * 120.03726 * 179.97438 * 14 13 12
16 16 C 1.34785 * 119.99829 * 35.13465 * 15 14 13
17 17 O 1.21589 * 119.99862 * 355.49991 * 16 15 14
18 18 N 1.34770 * 119.99901 * 175.49265 * 16 15 14
19 19 C 1.46505 * 119.99902 * 179.72527 * 18 16 15
20 20 C 1.52996 * 109.46922 * 180.02562 * 19 18 16
21 21 H 1.09001 * 109.64235 * 305.41406 * 20 19 18
22 22 C 1.53021 * 109.64698 * 66.05741 * 20 19 18
23 23 C 1.50063 * 110.15184 * 169.12023 * 22 20 19
24 24 C 1.29445 * 124.07192 * 342.86968 * 23 22 20
25 25 C 1.50066 * 124.07924 * 0.46177 * 24 23 22
26 26 C 1.53026 * 110.14442 * 342.87900 * 25 24 23
27 27 C 1.38738 * 120.03419 * 5.62092 * 10 9 7
28 28 H 0.97002 * 119.99434 * 0.02562 * 1 2 3
29 29 H 1.07996 * 119.96094 * 0.02562 * 11 10 9
30 30 H 1.08000 * 119.92824 * 179.97438 * 12 11 10
31 31 H 1.08001 * 119.96601 * 179.97438 * 13 12 11
32 32 H 0.97000 * 119.99980 * 215.12634 * 15 14 13
33 33 H 0.96997 * 120.00056 * 0.02562 * 18 16 15
34 34 H 1.09000 * 109.46693 * 299.99909 * 19 18 16
35 35 H 1.09001 * 109.46946 * 60.00171 * 19 18 16
36 36 H 1.09002 * 109.35758 * 289.32592 * 22 20 19
37 37 H 1.09004 * 109.35887 * 48.90770 * 22 20 19
38 38 H 1.07998 * 117.96847 * 162.89261 * 23 22 20
39 39 H 1.08001 * 117.96043 * 180.49364 * 24 23 22
40 40 H 1.08991 * 109.36345 * 222.66567 * 25 24 23
41 41 H 1.09004 * 109.24190 * 103.00851 * 25 24 23
42 42 H 1.08996 * 109.64280 * 289.74175 * 26 25 24
43 43 H 1.09000 * 109.81412 * 169.21778 * 26 25 24
44 44 H 1.07998 * 120.06875 * 359.97438 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4972 2.0464 -1.4000
5 1 1.4470 2.6527 0.6999
6 1 3.5471 1.4402 0.7001
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2007 0.0010
9 8 1.3347 -2.3684 0.0005
10 6 2.0700 -3.5046 -0.1049
11 6 1.4356 -4.7351 -0.2237
12 6 2.1831 -5.8917 -0.3305
13 6 3.5637 -5.8291 -0.3201
14 6 4.2039 -4.6018 -0.2027
15 7 5.6019 -4.5393 -0.1917
16 6 6.3207 -5.3959 -0.9441
17 8 5.7592 -6.2753 -1.5685
18 7 7.6619 -5.2777 -1.0045
19 6 8.4437 -6.2126 -1.8176
20 6 9.9290 -5.8608 -1.7125
21 1 10.0778 -4.8150 -1.9813
22 6 10.4152 -6.1031 -0.2820
23 6 11.9123 -6.0191 -0.2235
24 6 12.6839 -6.0943 -1.2602
25 6 12.1886 -6.2661 -2.6663
26 6 10.7391 -6.7565 -2.6583
27 6 3.4558 -3.4388 -0.0889
28 1 -0.4849 0.8401 -0.0004
29 1 0.3569 -4.7872 -0.2326
30 1 1.6877 -6.8469 -0.4223
31 1 4.1454 -6.7352 -0.4034
32 1 6.0535 -3.8794 0.3573
33 1 8.1098 -4.5764 -0.5062
34 1 8.2849 -7.2287 -1.4565
35 1 8.1261 -6.1427 -2.8579
36 1 9.9851 -5.3499 0.3782
37 1 10.0957 -7.0924 0.0456
38 1 12.3749 -5.8881 0.7435
39 1 13.7505 -6.0300 -1.1033
40 1 12.8136 -6.9942 -3.1831
41 1 12.2435 -5.3094 -3.1858
42 1 10.7031 -7.7876 -2.3070
43 1 10.3236 -6.6975 -3.6643
44 1 3.9511 -2.4840 0.0069
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000069181070.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:24
Heat of formation + Delta-G solvation = -23.303164 kcal
Electronic energy + Delta-G solvation = -25106.279556 eV
Core-core repulsion = 21410.234902 eV
Total energy + Delta-G solvation = -3696.044654 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.42009 -39.23819 -38.57969 -36.55213 -34.90989 -34.17078 -32.23064 -31.72563
-31.06465 -29.25740 -28.42043 -26.07419 -25.24247 -23.55118 -22.15742 -21.74752
-21.41374 -20.37614 -18.61253 -18.29301 -17.81973 -17.36944 -16.36386 -15.93258
-15.57110 -15.05603 -14.89237 -14.75198 -14.35396 -14.18412 -14.10658 -13.81710
-13.66757 -13.52587 -13.24723 -12.93083 -12.72931 -12.41906 -12.32502 -12.18400
-11.72230 -11.49175 -11.18253 -11.12003 -10.99845 -10.91104 -10.74562 -10.55165
-10.45191 -9.96352 -9.56381 -9.41603 -9.37230 -9.14616 -8.78045 -7.67435
-7.10258 -6.42667 -4.02307 1.91491 2.10464 2.44711 2.71500 3.11931
3.13482 3.17577 3.34973 3.97209 4.19228 4.21713 4.30625 4.46530
4.64684 4.79183 4.83900 4.94443 5.09404 5.10947 5.14792 5.30630
5.33735 5.45062 5.47448 5.53324 5.57530 5.66560 5.74803 5.79905
5.97750 6.05710 6.13343 6.26442 6.28328 6.30199 6.40835 6.56832
6.60709 6.83922 7.04570 7.14900 7.31949 7.38570 7.46850 7.87464
8.01615 8.06352 8.67128 9.02846 9.74084 10.75555
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.015911 B = 0.002515 C = 0.002241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.328294 B =11131.617045 C =12492.757734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.039 3.961
3 Si 0.940 3.060
4 H -0.274 1.274
5 H -0.278 1.278
6 H -0.269 1.269
7 C -0.391 4.391
8 H 0.090 0.910
9 O -0.177 6.177
10 C 0.168 3.832
11 C -0.201 4.201
12 C -0.065 4.065
13 C -0.204 4.204
14 C 0.196 3.804
15 N -0.682 5.682
16 C 0.702 3.298
17 O -0.571 6.571
18 N -0.747 5.747
19 C 0.144 3.856
20 C -0.100 4.100
21 H 0.080 0.920
22 C -0.087 4.087
23 C -0.154 4.154
24 C -0.159 4.159
25 C -0.091 4.091
26 C -0.112 4.112
27 C -0.258 4.258
28 H 0.269 0.731
29 H 0.118 0.882
30 H 0.115 0.885
31 H 0.125 0.875
32 H 0.402 0.598
33 H 0.395 0.605
34 H 0.067 0.933
35 H 0.068 0.932
36 H 0.071 0.929
37 H 0.077 0.923
38 H 0.102 0.898
39 H 0.101 0.899
40 H 0.072 0.928
41 H 0.074 0.926
42 H 0.068 0.932
43 H 0.071 0.929
44 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.615 -10.315 -1.354 25.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.498 5.498
2 C -0.165 4.165
3 Si 0.765 3.235
4 H -0.200 1.200
5 H -0.203 1.203
6 H -0.193 1.193
7 C -0.468 4.468
8 H 0.107 0.893
9 O -0.081 6.081
10 C 0.114 3.886
11 C -0.221 4.221
12 C -0.084 4.084
13 C -0.225 4.225
14 C 0.102 3.898
15 N -0.329 5.329
16 C 0.403 3.597
17 O -0.448 6.448
18 N -0.403 5.403
19 C 0.020 3.980
20 C -0.119 4.119
21 H 0.099 0.901
22 C -0.124 4.124
23 C -0.172 4.172
24 C -0.177 4.177
25 C -0.128 4.128
26 C -0.151 4.151
27 C -0.280 4.280
28 H 0.079 0.921
29 H 0.136 0.864
30 H 0.133 0.867
31 H 0.143 0.857
32 H 0.236 0.764
33 H 0.229 0.771
34 H 0.085 0.915
35 H 0.086 0.914
36 H 0.090 0.910
37 H 0.096 0.904
38 H 0.120 0.880
39 H 0.119 0.881
40 H 0.091 0.909
41 H 0.092 0.908
42 H 0.087 0.913
43 H 0.090 0.910
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 22.718 -10.919 -1.936 25.280
hybrid contribution 1.135 1.632 0.577 2.070
sum 23.853 -9.287 -1.359 25.633
Atomic orbital electron populations
1.70042 1.05903 1.27559 1.46320 1.25267 0.95831 0.98745 0.96686
0.85732 0.78843 0.80274 0.78648 1.19951 1.20283 1.19332 1.21262
0.91645 0.80907 1.52954 0.89290 1.84006 1.33936 1.11307 1.78852
1.19051 0.89360 0.88171 0.92032 1.20254 0.99704 0.90302 1.11816
1.20555 0.93148 0.96868 0.97807 1.20717 0.94251 0.96373 1.11154
1.17191 0.79808 0.93688 0.99065 1.42559 1.05525 1.37458 1.47371
1.15907 0.81338 0.82331 0.80130 1.90932 1.69687 1.35559 1.48584
1.45116 1.05078 1.36488 1.53654 1.21248 0.88524 0.92763 0.95443
1.21477 0.93457 1.01007 0.95939 0.90136 1.20532 0.92989 1.02533
0.96388 1.22058 0.95519 1.01159 0.98492 1.22064 0.99323 1.01505
0.94786 1.20446 0.95995 1.01604 0.94731 1.21572 0.94548 0.99388
0.99546 1.20789 0.93950 0.97068 1.16221 0.92073 0.86442 0.86666
0.85702 0.76390 0.77131 0.91478 0.91361 0.91013 0.90435 0.87990
0.88111 0.90906 0.90802 0.91294 0.91045 0.85352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16
2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16
3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16
4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16
6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
7 C -0.39 -10.90 9.49 30.88 0.29 -10.60 16
8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16
9 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16
10 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16
11 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16
12 C -0.06 -1.26 10.03 -39.64 -0.40 -1.65 16
13 C -0.20 -4.04 8.69 -39.34 -0.34 -4.38 16
14 C 0.20 3.83 6.29 -83.71 -0.53 3.31 16
15 N -0.68 -10.48 5.34 -14.24 -0.08 -10.55 16
16 C 0.70 10.73 8.41 -86.92 -0.73 9.99 16
17 O -0.57 -10.96 13.78 5.29 0.07 -10.89 16
18 N -0.75 -7.80 5.37 -65.22 -0.35 -8.15 16
19 C 0.14 1.34 5.07 -4.04 -0.02 1.31 16
20 C -0.10 -0.67 2.27 -90.41 -0.21 -0.88 16
21 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16
22 C -0.09 -0.57 5.20 -28.18 -0.15 -0.72 16
23 C -0.15 -1.01 9.80 -35.90 -0.35 -1.36 16
24 C -0.16 -1.00 9.80 -35.90 -0.35 -1.35 16
25 C -0.09 -0.52 6.12 -28.18 -0.17 -0.69 16
26 C -0.11 -0.69 5.31 -26.51 -0.14 -0.83 16
27 C -0.26 -5.66 9.08 -39.21 -0.36 -6.01 16
28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
29 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16
30 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16
31 H 0.13 2.46 6.22 -52.49 -0.33 2.13 16
32 H 0.40 4.79 8.84 -40.82 -0.36 4.43 16
33 H 0.39 3.03 7.84 -40.82 -0.32 2.71 16
34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16
35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
36 H 0.07 0.43 7.54 -51.93 -0.39 0.04 16
37 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16
38 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16
39 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16
40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
42 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16
43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
44 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16
LS Contribution 363.26 15.07 5.47 5.47
Total: -1.00 -33.64 363.26 -9.51 -43.15
By element:
Atomic # 1 Polarization: 15.25 SS G_CDS: -6.17 Total: 9.09 kcal
Atomic # 6 Polarization: -9.63 SS G_CDS: -4.20 Total: -13.83 kcal
Atomic # 7 Polarization: -43.63 SS G_CDS: 0.33 Total: -43.29 kcal
Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -33.64 -9.51 -43.15 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069181070.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.851 kcal
(2) G-P(sol) polarization free energy of solvation -33.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds