Wall clock time and date at job start Tue Mar 31 2020 10:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47095 * 269.99665 * 3 2 1 5 5 H 1.48502 * 109.46978 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47175 * 149.99464 * 3 2 1 7 7 C 1.38649 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99596 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00021 * 174.97332 * 9 7 2 11 11 C 1.38955 * 120.03399 * 185.37207 * 10 9 7 12 12 C 1.38124 * 120.06882 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.13977 * 359.97438 * 12 11 10 14 14 C 1.38918 * 120.07012 * 359.97438 * 13 12 11 15 15 N 1.39941 * 120.03726 * 179.97438 * 14 13 12 16 16 C 1.34785 * 119.99829 * 35.13465 * 15 14 13 17 17 O 1.21589 * 119.99862 * 355.49991 * 16 15 14 18 18 N 1.34770 * 119.99901 * 175.49265 * 16 15 14 19 19 C 1.46505 * 119.99902 * 179.72527 * 18 16 15 20 20 C 1.52996 * 109.46922 * 180.02562 * 19 18 16 21 21 H 1.09001 * 109.64235 * 305.41406 * 20 19 18 22 22 C 1.53021 * 109.64698 * 66.05741 * 20 19 18 23 23 C 1.50063 * 110.15184 * 169.12023 * 22 20 19 24 24 C 1.29445 * 124.07192 * 342.86968 * 23 22 20 25 25 C 1.50066 * 124.07924 * 0.46177 * 24 23 22 26 26 C 1.53026 * 110.14442 * 342.87900 * 25 24 23 27 27 C 1.38738 * 120.03419 * 5.62092 * 10 9 7 28 28 H 0.97002 * 119.99434 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.96094 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.92824 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.96601 * 179.97438 * 13 12 11 32 32 H 0.97000 * 119.99980 * 215.12634 * 15 14 13 33 33 H 0.96997 * 120.00056 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.46693 * 299.99909 * 19 18 16 35 35 H 1.09001 * 109.46946 * 60.00171 * 19 18 16 36 36 H 1.09002 * 109.35758 * 289.32592 * 22 20 19 37 37 H 1.09004 * 109.35887 * 48.90770 * 22 20 19 38 38 H 1.07998 * 117.96847 * 162.89261 * 23 22 20 39 39 H 1.08001 * 117.96043 * 180.49364 * 24 23 22 40 40 H 1.08991 * 109.36345 * 222.66567 * 25 24 23 41 41 H 1.09004 * 109.24190 * 103.00851 * 25 24 23 42 42 H 1.08996 * 109.64280 * 289.74175 * 26 25 24 43 43 H 1.09000 * 109.81412 * 169.21778 * 26 25 24 44 44 H 1.07998 * 120.06875 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 -0.1049 11 6 1.4356 -4.7351 -0.2237 12 6 2.1831 -5.8917 -0.3305 13 6 3.5637 -5.8291 -0.3201 14 6 4.2039 -4.6018 -0.2027 15 7 5.6019 -4.5393 -0.1917 16 6 6.3207 -5.3959 -0.9441 17 8 5.7592 -6.2753 -1.5685 18 7 7.6619 -5.2777 -1.0045 19 6 8.4437 -6.2126 -1.8176 20 6 9.9290 -5.8608 -1.7125 21 1 10.0778 -4.8150 -1.9813 22 6 10.4152 -6.1031 -0.2820 23 6 11.9123 -6.0191 -0.2235 24 6 12.6839 -6.0943 -1.2602 25 6 12.1886 -6.2661 -2.6663 26 6 10.7391 -6.7565 -2.6583 27 6 3.4558 -3.4388 -0.0889 28 1 -0.4849 0.8401 -0.0004 29 1 0.3569 -4.7872 -0.2326 30 1 1.6877 -6.8469 -0.4223 31 1 4.1454 -6.7352 -0.4034 32 1 6.0535 -3.8794 0.3573 33 1 8.1098 -4.5764 -0.5062 34 1 8.2849 -7.2287 -1.4565 35 1 8.1261 -6.1427 -2.8579 36 1 9.9851 -5.3499 0.3782 37 1 10.0957 -7.0924 0.0456 38 1 12.3749 -5.8881 0.7435 39 1 13.7505 -6.0300 -1.1033 40 1 12.8136 -6.9942 -3.1831 41 1 12.2435 -5.3094 -3.1858 42 1 10.7031 -7.7876 -2.3070 43 1 10.3236 -6.6975 -3.6643 44 1 3.9511 -2.4840 0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069181070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:24 Heat of formation + Delta-G solvation = -23.303164 kcal Electronic energy + Delta-G solvation = -25106.279556 eV Core-core repulsion = 21410.234902 eV Total energy + Delta-G solvation = -3696.044654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42009 -39.23819 -38.57969 -36.55213 -34.90989 -34.17078 -32.23064 -31.72563 -31.06465 -29.25740 -28.42043 -26.07419 -25.24247 -23.55118 -22.15742 -21.74752 -21.41374 -20.37614 -18.61253 -18.29301 -17.81973 -17.36944 -16.36386 -15.93258 -15.57110 -15.05603 -14.89237 -14.75198 -14.35396 -14.18412 -14.10658 -13.81710 -13.66757 -13.52587 -13.24723 -12.93083 -12.72931 -12.41906 -12.32502 -12.18400 -11.72230 -11.49175 -11.18253 -11.12003 -10.99845 -10.91104 -10.74562 -10.55165 -10.45191 -9.96352 -9.56381 -9.41603 -9.37230 -9.14616 -8.78045 -7.67435 -7.10258 -6.42667 -4.02307 1.91491 2.10464 2.44711 2.71500 3.11931 3.13482 3.17577 3.34973 3.97209 4.19228 4.21713 4.30625 4.46530 4.64684 4.79183 4.83900 4.94443 5.09404 5.10947 5.14792 5.30630 5.33735 5.45062 5.47448 5.53324 5.57530 5.66560 5.74803 5.79905 5.97750 6.05710 6.13343 6.26442 6.28328 6.30199 6.40835 6.56832 6.60709 6.83922 7.04570 7.14900 7.31949 7.38570 7.46850 7.87464 8.01615 8.06352 8.67128 9.02846 9.74084 10.75555 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002515 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.328294 B =11131.617045 C =12492.757734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.168 3.832 11 C -0.201 4.201 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.196 3.804 15 N -0.682 5.682 16 C 0.702 3.298 17 O -0.571 6.571 18 N -0.747 5.747 19 C 0.144 3.856 20 C -0.100 4.100 21 H 0.080 0.920 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.091 4.091 26 C -0.112 4.112 27 C -0.258 4.258 28 H 0.269 0.731 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.402 0.598 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.615 -10.315 -1.354 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.102 3.898 15 N -0.329 5.329 16 C 0.403 3.597 17 O -0.448 6.448 18 N -0.403 5.403 19 C 0.020 3.980 20 C -0.119 4.119 21 H 0.099 0.901 22 C -0.124 4.124 23 C -0.172 4.172 24 C -0.177 4.177 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.280 4.280 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.236 0.764 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.718 -10.919 -1.936 25.280 hybrid contribution 1.135 1.632 0.577 2.070 sum 23.853 -9.287 -1.359 25.633 Atomic orbital electron populations 1.70042 1.05903 1.27559 1.46320 1.25267 0.95831 0.98745 0.96686 0.85732 0.78843 0.80274 0.78648 1.19951 1.20283 1.19332 1.21262 0.91645 0.80907 1.52954 0.89290 1.84006 1.33936 1.11307 1.78852 1.19051 0.89360 0.88171 0.92032 1.20254 0.99704 0.90302 1.11816 1.20555 0.93148 0.96868 0.97807 1.20717 0.94251 0.96373 1.11154 1.17191 0.79808 0.93688 0.99065 1.42559 1.05525 1.37458 1.47371 1.15907 0.81338 0.82331 0.80130 1.90932 1.69687 1.35559 1.48584 1.45116 1.05078 1.36488 1.53654 1.21248 0.88524 0.92763 0.95443 1.21477 0.93457 1.01007 0.95939 0.90136 1.20532 0.92989 1.02533 0.96388 1.22058 0.95519 1.01159 0.98492 1.22064 0.99323 1.01505 0.94786 1.20446 0.95995 1.01604 0.94731 1.21572 0.94548 0.99388 0.99546 1.20789 0.93950 0.97068 1.16221 0.92073 0.86442 0.86666 0.85702 0.76390 0.77131 0.91478 0.91361 0.91013 0.90435 0.87990 0.88111 0.90906 0.90802 0.91294 0.91045 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.90 9.49 30.88 0.29 -10.60 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 10 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 11 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16 12 C -0.06 -1.26 10.03 -39.64 -0.40 -1.65 16 13 C -0.20 -4.04 8.69 -39.34 -0.34 -4.38 16 14 C 0.20 3.83 6.29 -83.71 -0.53 3.31 16 15 N -0.68 -10.48 5.34 -14.24 -0.08 -10.55 16 16 C 0.70 10.73 8.41 -86.92 -0.73 9.99 16 17 O -0.57 -10.96 13.78 5.29 0.07 -10.89 16 18 N -0.75 -7.80 5.37 -65.22 -0.35 -8.15 16 19 C 0.14 1.34 5.07 -4.04 -0.02 1.31 16 20 C -0.10 -0.67 2.27 -90.41 -0.21 -0.88 16 21 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 22 C -0.09 -0.57 5.20 -28.18 -0.15 -0.72 16 23 C -0.15 -1.01 9.80 -35.90 -0.35 -1.36 16 24 C -0.16 -1.00 9.80 -35.90 -0.35 -1.35 16 25 C -0.09 -0.52 6.12 -28.18 -0.17 -0.69 16 26 C -0.11 -0.69 5.31 -26.51 -0.14 -0.83 16 27 C -0.26 -5.66 9.08 -39.21 -0.36 -6.01 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.13 2.46 6.22 -52.49 -0.33 2.13 16 32 H 0.40 4.79 8.84 -40.82 -0.36 4.43 16 33 H 0.39 3.03 7.84 -40.82 -0.32 2.71 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.43 7.54 -51.93 -0.39 0.04 16 37 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 38 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.64 363.26 -9.51 -43.15 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.17 Total: 9.09 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -4.20 Total: -13.83 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.33 Total: -43.29 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.64 -9.51 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069181070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.851 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds