Wall clock time and date at job start Tue Mar 31 2020 10:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47095 * 269.99665 * 3 2 1 5 5 H 1.48502 * 109.46978 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47175 * 149.99464 * 3 2 1 7 7 C 1.38649 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99596 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00021 * 174.97332 * 9 7 2 11 11 C 1.38955 * 120.03399 * 185.37207 * 10 9 7 12 12 C 1.38124 * 120.06882 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.13977 * 359.97438 * 12 11 10 14 14 C 1.38918 * 120.07012 * 359.97438 * 13 12 11 15 15 N 1.39941 * 120.03726 * 179.97438 * 14 13 12 16 16 C 1.34785 * 119.99829 * 35.13465 * 15 14 13 17 17 O 1.21589 * 119.99862 * 355.49991 * 16 15 14 18 18 N 1.34770 * 119.99901 * 175.49265 * 16 15 14 19 19 C 1.46505 * 119.99902 * 179.72527 * 18 16 15 20 20 C 1.52996 * 109.46922 * 180.02562 * 19 18 16 21 21 H 1.09001 * 109.64235 * 305.41406 * 20 19 18 22 22 C 1.53021 * 109.64698 * 66.05741 * 20 19 18 23 23 C 1.50063 * 110.15184 * 169.12023 * 22 20 19 24 24 C 1.29445 * 124.07192 * 342.86968 * 23 22 20 25 25 C 1.50066 * 124.07924 * 0.46177 * 24 23 22 26 26 C 1.53026 * 110.14442 * 342.87900 * 25 24 23 27 27 C 1.38738 * 120.03419 * 5.62092 * 10 9 7 28 28 H 0.97002 * 119.99434 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.96094 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.92824 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.96601 * 179.97438 * 13 12 11 32 32 H 0.97000 * 119.99980 * 215.12634 * 15 14 13 33 33 H 0.96997 * 120.00056 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.46693 * 299.99909 * 19 18 16 35 35 H 1.09001 * 109.46946 * 60.00171 * 19 18 16 36 36 H 1.09002 * 109.35758 * 289.32592 * 22 20 19 37 37 H 1.09004 * 109.35887 * 48.90770 * 22 20 19 38 38 H 1.07998 * 117.96847 * 162.89261 * 23 22 20 39 39 H 1.08001 * 117.96043 * 180.49364 * 24 23 22 40 40 H 1.08991 * 109.36345 * 222.66567 * 25 24 23 41 41 H 1.09004 * 109.24190 * 103.00851 * 25 24 23 42 42 H 1.08996 * 109.64280 * 289.74175 * 26 25 24 43 43 H 1.09000 * 109.81412 * 169.21778 * 26 25 24 44 44 H 1.07998 * 120.06875 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 -0.1049 11 6 1.4356 -4.7351 -0.2237 12 6 2.1831 -5.8917 -0.3305 13 6 3.5637 -5.8291 -0.3201 14 6 4.2039 -4.6018 -0.2027 15 7 5.6019 -4.5393 -0.1917 16 6 6.3207 -5.3959 -0.9441 17 8 5.7592 -6.2753 -1.5685 18 7 7.6619 -5.2777 -1.0045 19 6 8.4437 -6.2126 -1.8176 20 6 9.9290 -5.8608 -1.7125 21 1 10.0778 -4.8150 -1.9813 22 6 10.4152 -6.1031 -0.2820 23 6 11.9123 -6.0191 -0.2235 24 6 12.6839 -6.0943 -1.2602 25 6 12.1886 -6.2661 -2.6663 26 6 10.7391 -6.7565 -2.6583 27 6 3.4558 -3.4388 -0.0889 28 1 -0.4849 0.8401 -0.0004 29 1 0.3569 -4.7872 -0.2326 30 1 1.6877 -6.8469 -0.4223 31 1 4.1454 -6.7352 -0.4034 32 1 6.0535 -3.8794 0.3573 33 1 8.1098 -4.5764 -0.5062 34 1 8.2849 -7.2287 -1.4565 35 1 8.1261 -6.1427 -2.8579 36 1 9.9851 -5.3499 0.3782 37 1 10.0957 -7.0924 0.0456 38 1 12.3749 -5.8881 0.7435 39 1 13.7505 -6.0300 -1.1033 40 1 12.8136 -6.9942 -3.1831 41 1 12.2435 -5.3094 -3.1858 42 1 10.7031 -7.7876 -2.3070 43 1 10.3236 -6.6975 -3.6643 44 1 3.9511 -2.4840 0.0069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069181070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:24 Heat of formation + Delta-G solvation = -44.483478 kcal Electronic energy + Delta-G solvation = -25107.198003 eV Core-core repulsion = 21410.234902 eV Total energy + Delta-G solvation = -3696.963101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70965 -40.52724 -39.64914 -38.19328 -35.89461 -35.63019 -34.21058 -32.48194 -31.59597 -30.87109 -30.02311 -27.35250 -26.76737 -24.19949 -23.47595 -23.36081 -22.12501 -21.74999 -20.08556 -19.41107 -19.00723 -18.79687 -17.46757 -16.92194 -16.75917 -16.59222 -16.32137 -16.02636 -15.65712 -15.50803 -15.35966 -15.15339 -14.69716 -14.52681 -14.36798 -14.11190 -13.83774 -13.56149 -13.22473 -13.19661 -12.89636 -12.86136 -12.78448 -12.64768 -12.42552 -12.10851 -11.68986 -11.51248 -11.42332 -11.27534 -11.05925 -11.04101 -10.71225 -10.15625 -9.83869 -9.30848 -8.82905 -8.44548 -6.13206 0.47128 0.73512 1.36750 1.44140 1.46460 1.54201 1.56275 2.07034 2.19281 2.86730 3.15966 3.18955 3.53303 3.64372 3.76098 3.92323 4.13757 4.24787 4.32745 4.36519 4.47256 4.47828 4.53537 4.65866 4.66421 4.74509 4.76931 4.82441 4.86063 5.04315 5.05016 5.09669 5.12906 5.13626 5.29626 5.37106 5.42038 5.48933 5.51082 5.69762 5.72556 5.80767 5.97496 6.03943 6.10312 6.23692 6.95878 6.99969 7.46488 7.79958 8.78542 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002515 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.328294 B =11131.617045 C =12492.757734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.227 6.227 10 C 0.134 3.866 11 C -0.214 4.214 12 C -0.053 4.053 13 C -0.200 4.200 14 C 0.204 3.796 15 N -0.674 5.674 16 C 0.700 3.300 17 O -0.611 6.611 18 N -0.724 5.724 19 C 0.145 3.855 20 C -0.089 4.089 21 H 0.085 0.915 22 C -0.087 4.087 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.091 4.091 26 C -0.113 4.113 27 C -0.260 4.260 28 H 0.272 0.728 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.766 -10.637 -1.398 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.133 6.133 10 C 0.083 3.917 11 C -0.234 4.234 12 C -0.072 4.072 13 C -0.220 4.220 14 C 0.109 3.891 15 N -0.322 5.322 16 C 0.401 3.599 17 O -0.490 6.490 18 N -0.381 5.381 19 C 0.021 3.979 20 C -0.108 4.108 21 H 0.103 0.897 22 C -0.124 4.124 23 C -0.182 4.182 24 C -0.181 4.181 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.282 4.282 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.257 0.743 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 25.967 -11.264 -1.960 28.372 hybrid contribution 0.305 1.435 0.555 1.568 sum 26.272 -9.829 -1.405 28.085 Atomic orbital electron populations 1.70194 1.08055 1.28756 1.48845 1.26596 0.96845 1.02753 0.95903 0.84587 0.77975 0.74556 0.79096 1.19132 1.19766 1.17212 1.21811 0.92537 0.81336 1.53155 0.87924 1.83977 1.35581 1.12444 1.81293 1.19575 0.90709 0.88029 0.93429 1.20476 1.00201 0.90380 1.12374 1.20931 0.93075 0.97478 0.95675 1.21007 0.94589 0.96729 1.09718 1.17186 0.81727 0.92791 0.97420 1.42403 1.03984 1.38101 1.47714 1.16060 0.82543 0.81676 0.79655 1.90905 1.70827 1.37170 1.50122 1.44978 1.03363 1.36716 1.53003 1.21344 0.89778 0.92222 0.94509 1.21387 0.91522 1.01355 0.96499 0.89658 1.20528 0.93222 1.02528 0.96125 1.22142 0.95470 1.01662 0.98944 1.22240 0.99845 1.01034 0.94996 1.20471 0.95625 1.02075 0.94619 1.21583 0.94873 0.99140 0.99507 1.20807 0.93178 0.98006 1.16239 0.91891 0.86334 0.82964 0.84881 0.74297 0.75131 0.92047 0.92343 0.90344 0.90886 0.87458 0.87364 0.90023 0.90387 0.91498 0.90747 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.67 21.61 0.30 -55.91 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 42.02 29.55 68.60 2.03 44.04 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.41 -23.64 9.49 67.92 0.64 -22.99 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.57 9.76 -22.69 -0.22 -13.79 16 10 C 0.13 6.73 6.64 22.56 0.15 6.88 16 11 C -0.21 -9.45 9.99 22.41 0.22 -9.22 16 12 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 13 C -0.20 -7.53 8.69 22.42 0.19 -7.34 16 14 C 0.20 7.69 6.29 38.13 0.24 7.93 16 15 N -0.67 -19.25 5.34 -317.22 -1.69 -20.94 16 16 C 0.70 19.91 8.41 179.05 1.51 21.41 16 17 O -0.61 -22.43 13.78 -3.99 -0.06 -22.49 16 18 N -0.72 -13.37 5.37 -478.53 -2.57 -15.94 16 19 C 0.15 2.41 5.07 86.38 0.44 2.85 16 20 C -0.09 -1.00 2.27 -10.66 -0.02 -1.02 16 21 H 0.09 0.93 8.13 -2.39 -0.02 0.91 16 22 C -0.09 -0.94 5.20 29.66 0.15 -0.78 16 23 C -0.16 -1.80 9.80 27.03 0.27 -1.53 16 24 C -0.16 -1.70 9.80 27.04 0.27 -1.44 16 25 C -0.09 -0.84 6.12 29.66 0.18 -0.66 16 26 C -0.11 -1.17 5.31 30.73 0.16 -1.01 16 27 C -0.26 -11.37 9.08 22.51 0.20 -11.17 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 30 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.13 4.92 6.22 -2.91 -0.02 4.91 16 32 H 0.42 8.92 8.84 -92.71 -0.82 8.10 16 33 H 0.41 5.03 7.84 -92.71 -0.73 4.31 16 34 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 0.73 7.54 -2.39 -0.02 0.71 16 37 H 0.07 0.87 8.06 -2.38 -0.02 0.85 16 38 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.13 5.52 5.64 -2.91 -0.02 5.51 16 Total: -1.00 -75.51 363.26 2.56 -72.95 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.51 Total: 32.77 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 5.29 Total: -20.69 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.97 Total: -92.79 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.28 Total: -36.28 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -75.51 2.56 -72.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069181070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.465 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds