Wall clock time and date at job start Tue Mar 31 2020 10:49:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31562 * 1
3 3 Si 1.86800 * 120.00041 * 2 1
4 4 H 1.48497 * 109.47095 * 269.99665 * 3 2 1
5 5 H 1.48502 * 109.46978 * 29.99458 * 3 2 1
6 6 H 1.48499 * 109.47175 * 149.99464 * 3 2 1
7 7 C 1.38649 * 119.99794 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99596 * 180.02562 * 7 2 1
9 9 O 1.34830 * 120.00285 * 0.02562 * 7 2 1
10 10 C 1.35746 * 117.00021 * 174.97332 * 9 7 2
11 11 C 1.38955 * 120.03399 * 185.37207 * 10 9 7
12 12 C 1.38124 * 120.06882 * 180.02562 * 11 10 9
13 13 C 1.38198 * 120.13977 * 359.97438 * 12 11 10
14 14 C 1.38918 * 120.07012 * 359.97438 * 13 12 11
15 15 N 1.39941 * 120.03726 * 179.97438 * 14 13 12
16 16 C 1.34785 * 119.99829 * 35.13465 * 15 14 13
17 17 O 1.21589 * 119.99862 * 355.49991 * 16 15 14
18 18 N 1.34770 * 119.99901 * 175.49265 * 16 15 14
19 19 C 1.46505 * 119.99902 * 179.72527 * 18 16 15
20 20 C 1.52996 * 109.46922 * 180.02562 * 19 18 16
21 21 H 1.09001 * 109.64235 * 305.41406 * 20 19 18
22 22 C 1.53021 * 109.64698 * 66.05741 * 20 19 18
23 23 C 1.50063 * 110.15184 * 169.12023 * 22 20 19
24 24 C 1.29445 * 124.07192 * 342.86968 * 23 22 20
25 25 C 1.50066 * 124.07924 * 0.46177 * 24 23 22
26 26 C 1.53026 * 110.14442 * 342.87900 * 25 24 23
27 27 C 1.38738 * 120.03419 * 5.62092 * 10 9 7
28 28 H 0.97002 * 119.99434 * 0.02562 * 1 2 3
29 29 H 1.07996 * 119.96094 * 0.02562 * 11 10 9
30 30 H 1.08000 * 119.92824 * 179.97438 * 12 11 10
31 31 H 1.08001 * 119.96601 * 179.97438 * 13 12 11
32 32 H 0.97000 * 119.99980 * 215.12634 * 15 14 13
33 33 H 0.96997 * 120.00056 * 0.02562 * 18 16 15
34 34 H 1.09000 * 109.46693 * 299.99909 * 19 18 16
35 35 H 1.09001 * 109.46946 * 60.00171 * 19 18 16
36 36 H 1.09002 * 109.35758 * 289.32592 * 22 20 19
37 37 H 1.09004 * 109.35887 * 48.90770 * 22 20 19
38 38 H 1.07998 * 117.96847 * 162.89261 * 23 22 20
39 39 H 1.08001 * 117.96043 * 180.49364 * 24 23 22
40 40 H 1.08991 * 109.36345 * 222.66567 * 25 24 23
41 41 H 1.09004 * 109.24190 * 103.00851 * 25 24 23
42 42 H 1.08996 * 109.64280 * 289.74175 * 26 25 24
43 43 H 1.09000 * 109.81412 * 169.21778 * 26 25 24
44 44 H 1.07998 * 120.06875 * 359.97438 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4972 2.0464 -1.4000
5 1 1.4470 2.6527 0.6999
6 1 3.5471 1.4402 0.7001
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2007 0.0010
9 8 1.3347 -2.3684 0.0005
10 6 2.0700 -3.5046 -0.1049
11 6 1.4356 -4.7351 -0.2237
12 6 2.1831 -5.8917 -0.3305
13 6 3.5637 -5.8291 -0.3201
14 6 4.2039 -4.6018 -0.2027
15 7 5.6019 -4.5393 -0.1917
16 6 6.3207 -5.3959 -0.9441
17 8 5.7592 -6.2753 -1.5685
18 7 7.6619 -5.2777 -1.0045
19 6 8.4437 -6.2126 -1.8176
20 6 9.9290 -5.8608 -1.7125
21 1 10.0778 -4.8150 -1.9813
22 6 10.4152 -6.1031 -0.2820
23 6 11.9123 -6.0191 -0.2235
24 6 12.6839 -6.0943 -1.2602
25 6 12.1886 -6.2661 -2.6663
26 6 10.7391 -6.7565 -2.6583
27 6 3.4558 -3.4388 -0.0889
28 1 -0.4849 0.8401 -0.0004
29 1 0.3569 -4.7872 -0.2326
30 1 1.6877 -6.8469 -0.4223
31 1 4.1454 -6.7352 -0.4034
32 1 6.0535 -3.8794 0.3573
33 1 8.1098 -4.5764 -0.5062
34 1 8.2849 -7.2287 -1.4565
35 1 8.1261 -6.1427 -2.8579
36 1 9.9851 -5.3499 0.3782
37 1 10.0957 -7.0924 0.0456
38 1 12.3749 -5.8881 0.7435
39 1 13.7505 -6.0300 -1.1033
40 1 12.8136 -6.9942 -3.1831
41 1 12.2435 -5.3094 -3.1858
42 1 10.7031 -7.7876 -2.3070
43 1 10.3236 -6.6975 -3.6643
44 1 3.9511 -2.4840 0.0069
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000069181070.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:24
Heat of formation + Delta-G solvation = -44.483478 kcal
Electronic energy + Delta-G solvation = -25107.198003 eV
Core-core repulsion = 21410.234902 eV
Total energy + Delta-G solvation = -3696.963101 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.70965 -40.52724 -39.64914 -38.19328 -35.89461 -35.63019 -34.21058 -32.48194
-31.59597 -30.87109 -30.02311 -27.35250 -26.76737 -24.19949 -23.47595 -23.36081
-22.12501 -21.74999 -20.08556 -19.41107 -19.00723 -18.79687 -17.46757 -16.92194
-16.75917 -16.59222 -16.32137 -16.02636 -15.65712 -15.50803 -15.35966 -15.15339
-14.69716 -14.52681 -14.36798 -14.11190 -13.83774 -13.56149 -13.22473 -13.19661
-12.89636 -12.86136 -12.78448 -12.64768 -12.42552 -12.10851 -11.68986 -11.51248
-11.42332 -11.27534 -11.05925 -11.04101 -10.71225 -10.15625 -9.83869 -9.30848
-8.82905 -8.44548 -6.13206 0.47128 0.73512 1.36750 1.44140 1.46460
1.54201 1.56275 2.07034 2.19281 2.86730 3.15966 3.18955 3.53303
3.64372 3.76098 3.92323 4.13757 4.24787 4.32745 4.36519 4.47256
4.47828 4.53537 4.65866 4.66421 4.74509 4.76931 4.82441 4.86063
5.04315 5.05016 5.09669 5.12906 5.13626 5.29626 5.37106 5.42038
5.48933 5.51082 5.69762 5.72556 5.80767 5.97496 6.03943 6.10312
6.23692 6.95878 6.99969 7.46488 7.79958 8.78542
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.015911 B = 0.002515 C = 0.002241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.328294 B =11131.617045 C =12492.757734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.024 4.024
3 Si 1.019 2.981
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.249 1.249
7 C -0.412 4.412
8 H 0.104 0.896
9 O -0.227 6.227
10 C 0.134 3.866
11 C -0.214 4.214
12 C -0.053 4.053
13 C -0.200 4.200
14 C 0.204 3.796
15 N -0.674 5.674
16 C 0.700 3.300
17 O -0.611 6.611
18 N -0.724 5.724
19 C 0.145 3.855
20 C -0.089 4.089
21 H 0.085 0.915
22 C -0.087 4.087
23 C -0.164 4.164
24 C -0.163 4.163
25 C -0.091 4.091
26 C -0.113 4.113
27 C -0.260 4.260
28 H 0.272 0.728
29 H 0.119 0.881
30 H 0.153 0.847
31 H 0.133 0.867
32 H 0.419 0.581
33 H 0.412 0.588
34 H 0.061 0.939
35 H 0.058 0.942
36 H 0.078 0.922
37 H 0.073 0.927
38 H 0.107 0.893
39 H 0.108 0.892
40 H 0.081 0.919
41 H 0.078 0.922
42 H 0.066 0.934
43 H 0.074 0.926
44 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.766 -10.637 -1.398 28.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.221 4.221
3 Si 0.838 3.162
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.172 1.172
7 C -0.488 4.488
8 H 0.121 0.879
9 O -0.133 6.133
10 C 0.083 3.917
11 C -0.234 4.234
12 C -0.072 4.072
13 C -0.220 4.220
14 C 0.109 3.891
15 N -0.322 5.322
16 C 0.401 3.599
17 O -0.490 6.490
18 N -0.381 5.381
19 C 0.021 3.979
20 C -0.108 4.108
21 H 0.103 0.897
22 C -0.124 4.124
23 C -0.182 4.182
24 C -0.181 4.181
25 C -0.128 4.128
26 C -0.151 4.151
27 C -0.282 4.282
28 H 0.081 0.919
29 H 0.137 0.863
30 H 0.170 0.830
31 H 0.151 0.849
32 H 0.257 0.743
33 H 0.249 0.751
34 H 0.080 0.920
35 H 0.077 0.923
36 H 0.097 0.903
37 H 0.091 0.909
38 H 0.125 0.875
39 H 0.126 0.874
40 H 0.100 0.900
41 H 0.096 0.904
42 H 0.085 0.915
43 H 0.093 0.907
44 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 25.967 -11.264 -1.960 28.372
hybrid contribution 0.305 1.435 0.555 1.568
sum 26.272 -9.829 -1.405 28.085
Atomic orbital electron populations
1.70194 1.08055 1.28756 1.48845 1.26596 0.96845 1.02753 0.95903
0.84587 0.77975 0.74556 0.79096 1.19132 1.19766 1.17212 1.21811
0.92537 0.81336 1.53155 0.87924 1.83977 1.35581 1.12444 1.81293
1.19575 0.90709 0.88029 0.93429 1.20476 1.00201 0.90380 1.12374
1.20931 0.93075 0.97478 0.95675 1.21007 0.94589 0.96729 1.09718
1.17186 0.81727 0.92791 0.97420 1.42403 1.03984 1.38101 1.47714
1.16060 0.82543 0.81676 0.79655 1.90905 1.70827 1.37170 1.50122
1.44978 1.03363 1.36716 1.53003 1.21344 0.89778 0.92222 0.94509
1.21387 0.91522 1.01355 0.96499 0.89658 1.20528 0.93222 1.02528
0.96125 1.22142 0.95470 1.01662 0.98944 1.22240 0.99845 1.01034
0.94996 1.20471 0.95625 1.02075 0.94619 1.21583 0.94873 0.99140
0.99507 1.20807 0.93178 0.98006 1.16239 0.91891 0.86334 0.82964
0.84881 0.74297 0.75131 0.92047 0.92343 0.90344 0.90886 0.87458
0.87364 0.90023 0.90387 0.91498 0.90747 0.85222
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.20 13.67 21.61 0.30 -55.91 16
2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16
3 Si 1.02 42.02 29.55 68.60 2.03 44.04 16
4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16
5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16
6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16
7 C -0.41 -23.64 9.49 67.92 0.64 -22.99 16
8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16
9 O -0.23 -13.57 9.76 -22.69 -0.22 -13.79 16
10 C 0.13 6.73 6.64 22.56 0.15 6.88 16
11 C -0.21 -9.45 9.99 22.41 0.22 -9.22 16
12 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16
13 C -0.20 -7.53 8.69 22.42 0.19 -7.34 16
14 C 0.20 7.69 6.29 38.13 0.24 7.93 16
15 N -0.67 -19.25 5.34 -317.22 -1.69 -20.94 16
16 C 0.70 19.91 8.41 179.05 1.51 21.41 16
17 O -0.61 -22.43 13.78 -3.99 -0.06 -22.49 16
18 N -0.72 -13.37 5.37 -478.53 -2.57 -15.94 16
19 C 0.15 2.41 5.07 86.38 0.44 2.85 16
20 C -0.09 -1.00 2.27 -10.66 -0.02 -1.02 16
21 H 0.09 0.93 8.13 -2.39 -0.02 0.91 16
22 C -0.09 -0.94 5.20 29.66 0.15 -0.78 16
23 C -0.16 -1.80 9.80 27.03 0.27 -1.53 16
24 C -0.16 -1.70 9.80 27.04 0.27 -1.44 16
25 C -0.09 -0.84 6.12 29.66 0.18 -0.66 16
26 C -0.11 -1.17 5.31 30.73 0.16 -1.01 16
27 C -0.26 -11.37 9.08 22.51 0.20 -11.17 16
28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16
29 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16
30 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16
31 H 0.13 4.92 6.22 -2.91 -0.02 4.91 16
32 H 0.42 8.92 8.84 -92.71 -0.82 8.10 16
33 H 0.41 5.03 7.84 -92.71 -0.73 4.31 16
34 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16
35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.08 0.73 7.54 -2.39 -0.02 0.71 16
37 H 0.07 0.87 8.06 -2.38 -0.02 0.85 16
38 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16
39 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16
40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
42 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16
43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.13 5.52 5.64 -2.91 -0.02 5.51 16
Total: -1.00 -75.51 363.26 2.56 -72.95
By element:
Atomic # 1 Polarization: 33.28 SS G_CDS: -0.51 Total: 32.77 kcal
Atomic # 6 Polarization: -25.99 SS G_CDS: 5.29 Total: -20.69 kcal
Atomic # 7 Polarization: -88.82 SS G_CDS: -3.97 Total: -92.79 kcal
Atomic # 8 Polarization: -36.00 SS G_CDS: -0.28 Total: -36.28 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal
Total: -75.51 2.56 -72.95 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069181070.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.465 kcal
(2) G-P(sol) polarization free energy of solvation -75.511 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds