Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38230 * 120.00163 * 2 1 4 4 C 1.38237 * 120.00118 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99738 * 359.96086 * 4 3 2 6 6 C 1.50699 * 119.99762 * 179.97438 * 5 4 3 7 7 N 1.46509 * 109.47021 * 90.00093 * 6 5 4 8 8 C 1.46757 * 124.34962 * 90.00343 * 7 6 5 9 9 C 1.54478 * 105.47396 * 163.00777 * 8 7 6 10 10 H 1.09002 * 110.96708 * 267.25548 * 9 8 7 11 11 C 1.50701 * 110.97221 * 143.53485 * 9 8 7 12 12 O 1.21294 * 120.00125 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99978 * 180.27740 * 11 9 8 14 14 C 1.46493 * 119.99957 * 359.71580 * 13 11 9 15 15 C 1.37093 * 119.99675 * 179.72152 * 13 11 9 16 16 H 1.08005 * 120.00260 * 21.72401 * 15 13 11 17 17 C 1.38955 * 119.99883 * 201.71780 * 15 13 11 18 18 N 1.31411 * 119.99379 * 14.89578 * 17 15 13 19 19 Si 1.86798 * 120.00290 * 194.89075 * 17 15 13 20 20 H 1.48507 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46901 * 120.00176 * 19 17 15 22 22 H 1.48495 * 109.47242 * 240.00701 * 19 17 15 23 23 C 1.54630 * 101.76891 * 25.41102 * 9 8 7 24 24 C 1.34417 * 124.34980 * 270.02314 * 7 6 5 25 25 O 1.21289 * 124.94189 * 0.42041 * 24 7 6 26 26 C 1.38230 * 120.00268 * 0.27195 * 5 4 3 27 27 C 1.38233 * 120.00001 * 359.54067 * 26 5 4 28 28 H 1.08996 * 109.47433 * 89.99994 * 1 2 3 29 29 H 1.09001 * 109.47021 * 209.99878 * 1 2 3 30 30 H 1.08997 * 109.46769 * 329.99274 * 1 2 3 31 31 H 1.08000 * 120.00016 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99918 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47384 * 330.00263 * 6 5 4 34 34 H 1.08994 * 109.47390 * 210.00067 * 6 5 4 35 35 H 1.08994 * 110.25164 * 44.00099 * 8 7 6 36 36 H 1.09003 * 110.24054 * 282.00243 * 8 7 6 37 37 H 1.09001 * 109.47279 * 90.48093 * 14 13 11 38 38 H 1.09003 * 109.47143 * 210.48306 * 14 13 11 39 39 H 1.09002 * 109.47208 * 330.48212 * 14 13 11 40 40 H 0.97005 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.48337 * 93.88144 * 23 9 8 42 42 H 1.09000 * 110.48776 * 216.52897 * 23 9 8 43 43 H 1.07999 * 120.00108 * 179.72588 * 26 5 4 44 44 H 1.08001 * 120.00347 * 180.20997 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0003 6 6 5.7787 -0.0001 -0.0014 7 7 6.2681 0.0008 1.3795 8 6 6.5447 -1.2103 2.1608 9 6 7.4252 -0.7464 3.3423 10 1 8.4838 -0.8430 3.1013 11 6 7.0889 -1.5094 4.5977 12 8 6.2223 -2.3578 4.5779 13 7 7.7470 -1.2448 5.7438 14 6 8.7934 -0.2198 5.7677 15 6 7.4371 -1.9349 6.8870 16 1 6.9484 -2.8959 6.8221 17 6 7.7519 -1.3982 8.1295 18 7 8.0708 -0.1277 8.2345 19 14 7.7217 -2.4824 9.6503 20 1 7.3349 -3.8637 9.2657 21 1 9.0703 -2.5013 10.2715 22 1 6.7363 -1.9445 10.6222 23 6 7.0200 0.7401 3.4729 24 6 6.5210 1.1110 2.0938 25 8 6.3705 2.2453 1.6914 26 6 3.5805 -1.1972 -0.0051 27 6 2.1982 -1.1972 -0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1206 2.1324 -0.0010 33 1 6.1417 0.8896 -0.5161 34 1 6.1416 -0.8904 -0.5149 35 1 7.0826 -1.9372 1.5522 36 1 5.6143 -1.6415 2.5303 37 1 8.3521 0.7441 6.0209 38 1 9.5432 -0.4834 6.5136 39 1 9.2635 -0.1576 4.7862 40 1 8.2902 0.2472 9.1019 41 1 6.2253 0.8555 4.2099 42 1 7.8832 1.3485 3.7427 43 1 4.1205 -2.1325 -0.0094 44 1 1.6582 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263652794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -37.226178 kcal Electronic energy + Delta-G solvation = -26305.789846 eV Core-core repulsion = 22609.141445 eV Total energy + Delta-G solvation = -3696.648401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52745 -39.29236 -38.28676 -36.01580 -34.75503 -34.08903 -32.02749 -31.24768 -30.94151 -28.24527 -27.34266 -26.35869 -25.12332 -24.40472 -22.81908 -22.15320 -20.97380 -19.38909 -18.64764 -17.03698 -16.91685 -16.60924 -15.98518 -15.68197 -15.26522 -15.12354 -14.78622 -14.33012 -14.18125 -13.99408 -13.85180 -13.44159 -13.32248 -13.22962 -12.94584 -12.58151 -12.57081 -12.33066 -12.01605 -11.86934 -11.67978 -11.53804 -11.32069 -11.26587 -10.99861 -10.93336 -10.88970 -10.85827 -10.35320 -10.29116 -9.67490 -9.08861 -8.92449 -8.70639 -8.53759 -8.40563 -7.76165 -6.38941 -3.93312 1.21696 1.40601 2.81079 3.10472 3.14383 3.22921 3.29364 3.73521 3.83245 4.06981 4.49248 4.69177 4.71757 4.74341 4.88652 4.91711 5.00305 5.02535 5.13178 5.29461 5.35167 5.38770 5.43143 5.46308 5.55229 5.67511 5.70123 5.77265 5.80937 5.94659 6.03694 6.05450 6.13623 6.28331 6.36631 6.39190 6.55203 6.56763 6.66427 6.79432 6.98640 7.14333 7.26347 7.51633 8.05058 8.36726 8.40379 9.10860 9.34654 9.88460 10.65209 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.003208 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.696423 B = 8725.746082 C = 9429.315456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.093 4.093 5 C -0.114 4.114 6 C 0.168 3.832 7 N -0.615 5.615 8 C 0.119 3.881 9 C -0.111 4.111 10 H 0.100 0.900 11 C 0.452 3.548 12 O -0.587 6.587 13 N -0.438 5.438 14 C 0.108 3.892 15 C -0.309 4.309 16 H 0.101 0.899 17 C 0.032 3.968 18 N -0.877 5.877 19 Si 0.925 3.075 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.140 4.140 24 C 0.523 3.477 25 O -0.540 6.540 26 C -0.097 4.097 27 C -0.124 4.124 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.268 0.732 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 0.934 -15.836 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.046 3.954 7 N -0.348 5.348 8 C -0.004 4.004 9 C -0.133 4.133 10 H 0.118 0.882 11 C 0.239 3.761 12 O -0.472 6.472 13 N -0.155 5.155 14 C -0.035 4.035 15 C -0.437 4.437 16 H 0.119 0.881 17 C -0.172 4.172 18 N -0.516 5.516 19 Si 0.752 3.248 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.180 4.180 24 C 0.312 3.688 25 O -0.417 6.417 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.610 1.241 -15.938 16.942 hybrid contribution 0.135 -0.343 0.996 1.062 sum -5.476 0.899 -14.942 15.939 Atomic orbital electron populations 1.20791 0.91355 1.02834 1.02092 1.19948 0.96013 0.93305 0.99340 1.21020 0.94192 0.97470 1.01612 1.21145 0.94119 0.97953 0.97922 1.20230 0.96049 0.93493 1.01786 1.20209 0.89373 1.03623 0.82184 1.48384 1.65252 1.07931 1.13269 1.22016 1.01057 0.86117 0.91166 1.22072 1.00809 0.94924 0.95520 0.88194 1.19474 0.84557 0.87321 0.84726 1.90522 1.34549 1.36815 1.85302 1.43541 1.30551 1.33575 1.07852 1.21585 0.91389 0.92661 0.97912 1.19712 1.39218 1.02346 0.82441 0.88150 1.25337 0.96996 0.95667 0.99179 1.70016 1.45195 1.10917 1.25459 0.85882 0.77825 0.80272 0.80859 1.19176 1.20623 1.20721 1.22349 1.04118 0.96105 0.95450 1.20989 0.76191 0.84160 0.87488 1.90665 1.54470 1.21186 1.75393 1.21045 0.94210 0.97482 0.98841 1.21002 0.94180 0.97481 1.01546 0.91312 0.91527 0.91597 0.86224 0.85690 0.89324 0.89544 0.90486 0.88992 0.92219 0.91156 0.95331 0.92180 0.87315 0.87587 0.85969 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 4 C -0.09 -1.23 9.70 -39.58 -0.38 -1.62 16 5 C -0.11 -1.47 5.46 -104.63 -0.57 -2.04 16 6 C 0.17 2.03 6.06 -5.19 -0.03 1.99 16 7 N -0.61 -8.98 2.92 -173.78 -0.51 -9.48 16 8 C 0.12 1.80 6.71 -3.13 -0.02 1.78 16 9 C -0.11 -1.88 2.54 -90.14 -0.23 -2.11 16 10 H 0.10 1.47 7.25 -51.93 -0.38 1.10 16 11 C 0.45 10.22 6.91 -10.98 -0.08 10.15 16 12 O -0.59 -15.20 15.19 5.55 0.08 -15.12 16 13 N -0.44 -10.61 3.02 -122.19 -0.37 -10.98 16 14 C 0.11 2.27 7.45 59.84 0.45 2.72 16 15 C -0.31 -8.31 9.28 -14.93 -0.14 -8.45 16 16 H 0.10 2.84 7.41 -52.48 -0.39 2.45 16 17 C 0.03 0.82 5.03 -17.47 -0.09 0.73 16 18 N -0.88 -22.68 10.77 55.50 0.60 -22.08 16 19 Si 0.92 20.20 29.58 -169.99 -5.03 15.18 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.14 -2.35 5.47 -26.74 -0.15 -2.49 16 24 C 0.52 8.85 8.02 -10.86 -0.09 8.76 16 25 O -0.54 -10.38 17.60 5.55 0.10 -10.28 16 26 C -0.10 -1.17 9.70 -39.59 -0.38 -1.56 16 27 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.62 6.96 -51.93 -0.36 1.26 16 37 H 0.06 1.30 7.63 -51.93 -0.40 0.91 16 38 H 0.07 1.57 6.99 -51.93 -0.36 1.21 16 39 H 0.03 0.48 6.09 -51.93 -0.32 0.17 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.11 2.04 7.89 -51.93 -0.41 1.63 16 42 H 0.11 1.63 7.54 -51.93 -0.39 1.24 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.67 364.75 -8.70 -40.37 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.34 Total: 4.96 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.73 Total: 1.93 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.28 Total: -42.54 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.18 Total: -25.40 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.67 -8.70 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263652794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.145 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds