Wall clock time and date at job start Tue Mar 31 2020 12:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38230 * 120.00163 * 2 1 4 4 C 1.38237 * 120.00118 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99738 * 359.96086 * 4 3 2 6 6 C 1.50699 * 119.99762 * 179.97438 * 5 4 3 7 7 N 1.46509 * 109.47021 * 90.00093 * 6 5 4 8 8 C 1.46757 * 124.34962 * 90.00343 * 7 6 5 9 9 C 1.54478 * 105.47396 * 163.00777 * 8 7 6 10 10 H 1.09002 * 110.96708 * 267.25548 * 9 8 7 11 11 C 1.50701 * 110.97221 * 143.53485 * 9 8 7 12 12 O 1.21294 * 120.00125 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99978 * 180.27740 * 11 9 8 14 14 C 1.46493 * 119.99957 * 359.71580 * 13 11 9 15 15 C 1.37093 * 119.99675 * 179.72152 * 13 11 9 16 16 H 1.08005 * 120.00260 * 21.72401 * 15 13 11 17 17 C 1.38955 * 119.99883 * 201.71780 * 15 13 11 18 18 N 1.31411 * 119.99379 * 14.89578 * 17 15 13 19 19 Si 1.86798 * 120.00290 * 194.89075 * 17 15 13 20 20 H 1.48507 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46901 * 120.00176 * 19 17 15 22 22 H 1.48495 * 109.47242 * 240.00701 * 19 17 15 23 23 C 1.54630 * 101.76891 * 25.41102 * 9 8 7 24 24 C 1.34417 * 124.34980 * 270.02314 * 7 6 5 25 25 O 1.21289 * 124.94189 * 0.42041 * 24 7 6 26 26 C 1.38230 * 120.00268 * 0.27195 * 5 4 3 27 27 C 1.38233 * 120.00001 * 359.54067 * 26 5 4 28 28 H 1.08996 * 109.47433 * 89.99994 * 1 2 3 29 29 H 1.09001 * 109.47021 * 209.99878 * 1 2 3 30 30 H 1.08997 * 109.46769 * 329.99274 * 1 2 3 31 31 H 1.08000 * 120.00016 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99918 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47384 * 330.00263 * 6 5 4 34 34 H 1.08994 * 109.47390 * 210.00067 * 6 5 4 35 35 H 1.08994 * 110.25164 * 44.00099 * 8 7 6 36 36 H 1.09003 * 110.24054 * 282.00243 * 8 7 6 37 37 H 1.09001 * 109.47279 * 90.48093 * 14 13 11 38 38 H 1.09003 * 109.47143 * 210.48306 * 14 13 11 39 39 H 1.09002 * 109.47208 * 330.48212 * 14 13 11 40 40 H 0.97005 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.48337 * 93.88144 * 23 9 8 42 42 H 1.09000 * 110.48776 * 216.52897 * 23 9 8 43 43 H 1.07999 * 120.00108 * 179.72588 * 26 5 4 44 44 H 1.08001 * 120.00347 * 180.20997 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0003 6 6 5.7787 -0.0001 -0.0014 7 7 6.2681 0.0008 1.3795 8 6 6.5447 -1.2103 2.1608 9 6 7.4252 -0.7464 3.3423 10 1 8.4838 -0.8430 3.1013 11 6 7.0889 -1.5094 4.5977 12 8 6.2223 -2.3578 4.5779 13 7 7.7470 -1.2448 5.7438 14 6 8.7934 -0.2198 5.7677 15 6 7.4371 -1.9349 6.8870 16 1 6.9484 -2.8959 6.8221 17 6 7.7519 -1.3982 8.1295 18 7 8.0708 -0.1277 8.2345 19 14 7.7217 -2.4824 9.6503 20 1 7.3349 -3.8637 9.2657 21 1 9.0703 -2.5013 10.2715 22 1 6.7363 -1.9445 10.6222 23 6 7.0200 0.7401 3.4729 24 6 6.5210 1.1110 2.0938 25 8 6.3705 2.2453 1.6914 26 6 3.5805 -1.1972 -0.0051 27 6 2.1982 -1.1972 -0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1206 2.1324 -0.0010 33 1 6.1417 0.8896 -0.5161 34 1 6.1416 -0.8904 -0.5149 35 1 7.0826 -1.9372 1.5522 36 1 5.6143 -1.6415 2.5303 37 1 8.3521 0.7441 6.0209 38 1 9.5432 -0.4834 6.5136 39 1 9.2635 -0.1576 4.7862 40 1 8.2902 0.2472 9.1019 41 1 6.2253 0.8555 4.2099 42 1 7.8832 1.3485 3.7427 43 1 4.1205 -2.1325 -0.0094 44 1 1.6582 -2.1325 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263652794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:01 Heat of formation + Delta-G solvation = -54.793703 kcal Electronic energy + Delta-G solvation = -26306.551631 eV Core-core repulsion = 22609.141445 eV Total energy + Delta-G solvation = -3697.410186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85505 -40.38312 -39.85723 -37.41002 -36.59860 -35.19497 -33.69713 -32.60031 -31.85335 -29.30358 -28.67852 -28.09902 -26.65690 -25.62598 -23.92328 -23.45552 -21.92439 -20.75555 -20.18598 -18.89083 -18.40586 -17.91024 -17.20262 -16.90878 -16.56661 -16.21424 -16.13758 -15.88656 -15.71019 -15.63184 -14.74318 -14.59738 -14.44639 -14.32966 -14.30688 -14.24119 -13.59557 -13.44695 -13.33079 -13.29541 -13.08542 -12.85197 -12.70924 -12.62142 -12.44920 -12.34635 -12.20133 -12.08226 -12.06411 -11.83328 -11.09397 -10.97401 -10.32934 -9.85891 -9.79620 -9.67919 -9.48160 -8.33480 -5.96022 0.28429 0.47182 1.36329 1.43294 1.47453 1.56335 1.95548 2.01658 2.28914 2.87317 2.95443 3.08223 3.33447 3.53606 3.81782 3.85421 3.92570 3.97601 4.06822 4.11493 4.19205 4.27469 4.49021 4.53535 4.56733 4.62700 4.66679 4.67826 4.80534 4.82714 4.86059 4.93269 5.01515 5.08550 5.14941 5.25161 5.41673 5.46888 5.47646 5.48220 5.62592 5.66595 6.01723 6.09192 6.10471 6.47698 7.07068 7.17292 7.48182 8.02164 8.68810 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.003208 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.696423 B = 8725.746082 C = 9429.315456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.112 4.112 5 C -0.129 4.129 6 C 0.165 3.835 7 N -0.604 5.604 8 C 0.126 3.874 9 C -0.100 4.100 10 H 0.135 0.865 11 C 0.449 3.551 12 O -0.626 6.626 13 N -0.455 5.455 14 C 0.117 3.883 15 C -0.344 4.344 16 H 0.074 0.926 17 C -0.001 4.001 18 N -0.893 5.893 19 Si 0.986 3.014 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.279 1.279 23 C -0.136 4.136 24 C 0.522 3.478 25 O -0.566 6.566 26 C -0.105 4.105 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.273 0.727 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.139 0.861 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 0.314 -16.891 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.156 4.156 4 C -0.130 4.130 5 C -0.130 4.130 6 C 0.045 3.955 7 N -0.336 5.336 8 C 0.003 3.997 9 C -0.122 4.122 10 H 0.153 0.847 11 C 0.238 3.762 12 O -0.513 6.513 13 N -0.173 5.173 14 C -0.025 4.025 15 C -0.472 4.472 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.531 5.531 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.191 1.191 22 H -0.205 1.205 23 C -0.176 4.176 24 C 0.311 3.689 25 O -0.446 6.446 26 C -0.123 4.123 27 C -0.152 4.152 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.188 0.625 -17.013 17.798 hybrid contribution -0.088 -0.151 1.287 1.299 sum -5.276 0.473 -15.726 16.594 Atomic orbital electron populations 1.20839 0.89358 1.03433 1.03275 1.20322 0.97626 0.92990 0.98319 1.21261 0.94020 0.98570 1.01705 1.21228 0.94854 0.97895 0.99072 1.20351 0.96520 0.93646 1.02490 1.20459 0.89024 1.05320 0.80729 1.48401 1.64227 1.06918 1.14015 1.21955 0.99946 0.86667 0.91109 1.22003 1.03136 0.93875 0.93163 0.84687 1.20352 0.83390 0.86586 0.85891 1.90493 1.36057 1.38544 1.86253 1.43777 1.31642 1.34094 1.07741 1.21535 0.90161 0.90977 0.99874 1.19653 1.40904 1.02345 0.84305 0.90759 1.26031 0.96200 0.96821 1.01241 1.70084 1.45011 1.11710 1.26301 0.84989 0.78315 0.78299 0.77438 1.19647 1.19132 1.20502 1.22278 1.03956 0.96307 0.95074 1.20928 0.76233 0.84271 0.87512 1.90654 1.55856 1.22275 1.75841 1.21306 0.94715 0.97824 0.98448 1.21349 0.94359 0.98433 1.01097 0.89742 0.90789 0.91152 0.84995 0.86820 0.89275 0.86186 0.86798 0.91540 0.93479 0.92867 0.90924 0.91745 0.89939 0.85994 0.84366 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.01 5.88 -19.86 -0.12 -2.12 16 3 C -0.14 -3.28 9.70 22.27 0.22 -3.07 16 4 C -0.11 -2.97 9.70 22.27 0.22 -2.76 16 5 C -0.13 -3.19 5.46 -19.87 -0.11 -3.30 16 6 C 0.17 3.66 6.06 85.63 0.52 4.18 16 7 N -0.60 -16.52 2.92 -822.32 -2.40 -18.92 16 8 C 0.13 3.54 6.71 86.83 0.58 4.13 16 9 C -0.10 -3.20 2.54 -10.48 -0.03 -3.23 16 10 H 0.14 3.44 7.25 -2.39 -0.02 3.42 16 11 C 0.45 20.26 6.91 87.66 0.61 20.86 16 12 O -0.63 -33.00 15.19 -3.07 -0.05 -33.05 16 13 N -0.45 -22.18 3.02 -658.88 -1.99 -24.17 16 14 C 0.12 4.84 7.45 127.77 0.95 5.79 16 15 C -0.34 -18.90 9.28 84.04 0.78 -18.12 16 16 H 0.07 4.37 7.41 -2.91 -0.02 4.35 16 17 C 0.00 -0.03 5.03 84.93 0.43 0.39 16 18 N -0.89 -46.23 10.77 21.66 0.23 -46.00 16 19 Si 0.99 41.54 29.58 68.60 2.03 43.57 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 C -0.14 -4.42 5.47 30.59 0.17 -4.26 16 24 C 0.52 17.13 8.02 87.90 0.71 17.84 16 25 O -0.57 -21.59 17.60 -3.06 -0.05 -21.64 16 26 C -0.10 -2.37 9.70 22.27 0.22 -2.15 16 27 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.03 8.09 -2.39 -0.02 1.02 16 30 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.11 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.09 2.00 7.88 -2.38 -0.02 1.98 16 34 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 2.28 6.96 -2.39 -0.02 2.27 16 37 H 0.05 2.04 7.63 -2.39 -0.02 2.02 16 38 H 0.05 2.35 6.99 -2.39 -0.02 2.33 16 39 H 0.07 2.29 6.09 -2.39 -0.01 2.27 16 40 H 0.27 13.28 8.31 -92.70 -0.77 12.51 16 41 H 0.08 3.16 7.89 -2.39 -0.02 3.14 16 42 H 0.12 3.54 7.54 -2.39 -0.02 3.52 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.37 364.75 4.84 -65.53 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.00 Total: 24.20 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.06 Total: 10.47 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -4.15 Total: -89.08 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.10 Total: -54.69 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.37 4.84 -65.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263652794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.739 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds