Wall clock time and date at job start Tue Mar 31 2020 10:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48509 * 109.46892 * 269.99576 * 3 2 1 5 5 H 1.48500 * 109.47424 * 29.99435 * 3 2 1 6 6 H 1.48500 * 109.47286 * 149.99988 * 3 2 1 7 7 C 1.38653 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.35745 * 116.99747 * 185.40547 * 9 7 2 11 11 C 1.38956 * 120.03341 * 185.93135 * 10 9 7 12 12 C 1.38117 * 120.07397 * 179.97438 * 11 10 9 13 13 C 1.38204 * 120.13706 * 359.72197 * 12 11 10 14 14 C 1.38923 * 120.06539 * 0.55328 * 13 12 11 15 15 N 1.39936 * 120.03657 * 179.72525 * 14 13 12 16 16 C 1.34783 * 119.99884 * 326.17829 * 15 14 13 17 17 O 1.21586 * 120.00217 * 354.72973 * 16 15 14 18 18 N 1.34776 * 120.00040 * 174.73312 * 16 15 14 19 19 C 1.49249 * 126.08020 * 179.97438 * 18 16 15 20 20 C 1.49866 * 104.69367 * 186.50567 * 19 18 16 21 21 H 1.08996 * 108.89522 * 78.07469 * 20 19 18 22 22 C 1.50011 * 127.33731 * 211.85399 * 20 19 18 23 23 C 1.56195 * 103.78319 * 149.40182 * 22 20 19 24 24 C 1.56445 * 105.66057 * 353.09633 * 23 22 20 25 25 C 1.51942 * 101.41684 * 333.62159 * 24 23 22 26 26 H 1.09004 * 111.84755 * 289.50933 * 25 24 23 27 27 C 1.49594 * 126.07959 * 359.97438 * 18 16 15 28 28 C 1.38733 * 120.04020 * 5.90475 * 10 9 7 29 29 H 0.97001 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.96473 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.93492 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.96942 * 180.29618 * 13 12 11 33 33 H 0.96998 * 120.00473 * 146.17544 * 15 14 13 34 34 H 1.09003 * 110.39149 * 67.70208 * 19 18 16 35 35 H 1.08998 * 110.48934 * 305.36261 * 19 18 16 36 36 H 1.08997 * 110.55933 * 30.83238 * 22 20 19 37 37 H 1.08992 * 110.56551 * 267.97634 * 22 20 19 38 38 H 1.09005 * 110.22071 * 112.16363 * 23 22 20 39 39 H 1.09002 * 110.22252 * 234.02065 * 23 22 20 40 40 H 1.09001 * 111.02946 * 91.61028 * 24 23 22 41 41 H 1.08995 * 111.02292 * 215.51915 * 24 23 22 42 42 H 1.09002 * 110.80686 * 324.02353 * 27 18 16 43 43 H 1.09002 * 110.80721 * 87.53126 * 27 18 16 44 44 H 1.08003 * 120.06333 * 0.04402 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4050 -0.1134 11 6 5.3553 -2.4928 0.0027 12 6 5.9830 -3.7178 -0.1120 13 6 5.2389 -4.8605 -0.3367 14 6 3.8575 -4.7785 -0.4594 15 7 3.1052 -5.9352 -0.6927 16 6 3.6175 -6.9329 -1.4402 17 8 4.6921 -6.7900 -1.9907 18 7 2.9385 -8.0890 -1.5774 19 6 3.3757 -9.2765 -2.3689 20 6 2.2058 -10.2123 -2.3279 21 1 1.4540 -9.8689 -3.0384 22 6 2.2394 -11.7120 -2.3425 23 6 0.9759 -12.1205 -1.5200 24 6 0.4017 -10.7869 -0.9376 25 6 1.6504 -9.9233 -0.8762 26 1 2.3386 -10.2598 -0.1009 27 6 1.6127 -8.4103 -0.9635 28 6 3.2241 -3.5495 -0.3447 29 1 -0.4850 0.8401 -0.0004 30 1 5.9392 -1.6023 0.1828 31 1 7.0573 -3.7834 -0.0218 32 1 5.7321 -5.8175 -0.4212 33 1 2.2151 -6.0189 -0.3164 34 1 4.2486 -9.7393 -1.9085 35 1 3.5967 -8.9895 -3.3969 36 1 3.1453 -12.0793 -1.8603 37 1 2.1691 -12.0866 -3.3636 38 1 0.2407 -12.5953 -2.1698 39 1 1.2550 -12.7957 -0.7111 40 1 -0.3399 -10.3541 -1.6091 41 1 -0.0169 -10.9426 0.0566 42 1 1.5279 -7.9672 0.0288 43 1 0.7976 -8.0797 -1.6073 44 1 2.1499 -3.4837 -0.4356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268198655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:16 Heat of formation + Delta-G solvation = -6.691949 kcal Electronic energy + Delta-G solvation = -25788.506817 eV Core-core repulsion = 22093.182480 eV Total energy + Delta-G solvation = -3695.324337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02276 -39.74414 -38.66471 -36.60094 -35.08348 -34.19529 -32.33451 -30.77225 -30.04807 -29.21621 -28.25658 -26.56242 -25.19437 -23.90683 -21.83643 -21.68821 -20.74428 -20.16054 -19.67952 -18.30710 -17.77607 -17.39815 -16.69540 -15.72079 -15.43122 -15.17021 -15.05642 -14.97580 -14.46159 -14.21095 -14.05239 -13.81793 -13.55894 -13.13292 -13.05053 -12.80361 -12.51611 -12.27636 -12.11771 -11.88165 -11.67228 -11.62060 -11.55315 -11.17523 -11.14329 -10.91004 -10.81565 -10.75226 -10.44928 -10.26570 -9.97468 -9.64583 -9.48050 -8.84404 -8.80081 -7.74042 -7.23787 -6.41161 -4.07981 2.00547 2.31745 2.46095 3.22761 3.27226 3.30816 3.42285 3.51441 3.90396 4.25226 4.26156 4.36713 4.56205 4.59790 4.77534 4.88392 4.90204 4.93886 5.07996 5.10110 5.15110 5.24067 5.33024 5.36793 5.49914 5.57012 5.61562 5.62060 5.67607 5.74814 5.90062 5.95451 5.97352 6.00768 6.03590 6.22370 6.25682 6.49283 6.81479 6.95905 7.18050 7.24697 7.28944 7.63610 7.79644 7.97515 8.04754 8.64260 8.94764 9.57811 10.66702 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.002767 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.730956 B =10117.150160 C =11241.105288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.104 0.896 9 O -0.216 6.216 10 C 0.175 3.825 11 C -0.202 4.202 12 C -0.063 4.063 13 C -0.198 4.198 14 C 0.200 3.800 15 N -0.680 5.680 16 C 0.723 3.277 17 O -0.570 6.570 18 N -0.645 5.645 19 C 0.151 3.849 20 C -0.127 4.127 21 H 0.078 0.922 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.105 4.105 25 C -0.122 4.122 26 H 0.091 0.909 27 C 0.111 3.889 28 C -0.246 4.246 29 H 0.279 0.721 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -23.046 -1.634 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.121 0.879 9 O -0.122 6.122 10 C 0.123 3.877 11 C -0.222 4.222 12 C -0.082 4.082 13 C -0.219 4.219 14 C 0.106 3.894 15 N -0.327 5.327 16 C 0.426 3.574 17 O -0.446 6.446 18 N -0.385 5.385 19 C 0.029 3.971 20 C -0.146 4.146 21 H 0.096 0.904 22 C -0.137 4.137 23 C -0.160 4.160 24 C -0.143 4.143 25 C -0.141 4.141 26 H 0.109 0.891 27 C -0.011 4.011 28 C -0.268 4.268 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.044 -22.526 -2.020 22.708 hybrid contribution -0.517 0.650 0.093 0.836 sum 1.527 -21.875 -1.928 22.013 Atomic orbital electron populations 1.69648 1.05563 1.28447 1.48354 1.24459 0.95026 0.98840 0.95677 0.86180 0.80371 0.81390 0.78973 1.19922 1.20829 1.18263 1.20717 0.76965 0.96487 1.52223 0.87855 1.83614 1.22513 1.25345 1.80686 1.18784 0.91373 0.85026 0.92553 1.20230 0.91857 0.98169 1.11978 1.20519 0.98615 0.91421 0.97676 1.20637 0.92174 0.99091 1.09983 1.17200 0.90679 0.83949 0.97597 1.42600 1.19923 1.16321 1.53848 1.15366 0.83427 0.79030 0.79601 1.90947 1.21476 1.80531 1.51627 1.48820 1.21681 1.13983 1.54016 1.20780 0.96155 0.84181 0.96015 1.21962 0.98578 0.95869 0.98202 0.90395 1.21428 0.98620 0.93025 1.00630 1.23016 0.96647 0.97137 0.99218 1.21995 0.95963 0.94930 1.01433 1.22751 0.99249 0.94047 0.98062 0.89055 1.21788 0.85636 0.95170 0.98492 1.20884 1.01303 0.90533 1.14071 0.91111 0.86400 0.86462 0.86097 0.76188 0.91434 0.90907 0.91242 0.91211 0.91422 0.91368 0.90876 0.91078 0.90426 0.90775 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.96 55.48 0.77 -24.59 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.76 28.62 -169.99 -4.86 16.90 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.91 9.90 30.89 0.31 -10.61 16 8 H 0.10 2.95 5.53 -52.49 -0.29 2.66 16 9 O -0.22 -5.75 8.58 0.07 0.00 -5.74 16 10 C 0.18 4.12 6.64 -39.13 -0.26 3.86 16 11 C -0.20 -4.16 9.99 -39.36 -0.39 -4.55 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.20 -3.85 8.65 -39.34 -0.34 -4.19 16 14 C 0.20 3.95 6.27 -83.72 -0.52 3.42 16 15 N -0.68 -11.23 5.30 -14.24 -0.08 -11.30 16 16 C 0.72 12.03 8.26 -86.91 -0.72 11.31 16 17 O -0.57 -11.51 14.42 5.29 0.08 -11.44 16 18 N -0.64 -7.99 3.42 -177.22 -0.61 -8.60 16 19 C 0.15 1.55 6.82 -4.07 -0.03 1.52 16 20 C -0.13 -0.93 2.63 -90.86 -0.24 -1.17 16 21 H 0.08 0.59 7.95 -51.93 -0.41 0.18 16 22 C -0.10 -0.56 6.74 -26.50 -0.18 -0.73 16 23 C -0.12 -0.61 6.95 -23.16 -0.16 -0.77 16 24 C -0.11 -0.58 6.60 -25.42 -0.17 -0.75 16 25 C -0.12 -0.87 3.17 -89.07 -0.28 -1.15 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 27 C 0.11 1.00 6.33 -3.03 -0.02 0.98 16 28 C -0.25 -5.42 9.04 -39.21 -0.35 -5.77 16 29 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 31 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.12 2.35 6.45 -52.49 -0.34 2.01 16 33 H 0.40 5.54 7.41 -40.82 -0.30 5.24 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.65 7.43 -51.93 -0.39 0.26 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.14 3.05 5.71 -52.48 -0.30 2.75 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -32.52 355.46 -9.43 -41.95 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.24 Total: 5.98 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.85 Total: -8.51 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.09 Total: -44.49 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.08 Total: -17.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.52 -9.43 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268198655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.256 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds