Wall clock time and date at job start Tue Mar 31 2020 10:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48509 * 109.46892 * 269.99576 * 3 2 1 5 5 H 1.48500 * 109.47424 * 29.99435 * 3 2 1 6 6 H 1.48500 * 109.47286 * 149.99988 * 3 2 1 7 7 C 1.38653 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.35745 * 116.99747 * 185.40547 * 9 7 2 11 11 C 1.38956 * 120.03341 * 185.93135 * 10 9 7 12 12 C 1.38117 * 120.07397 * 179.97438 * 11 10 9 13 13 C 1.38204 * 120.13706 * 359.72197 * 12 11 10 14 14 C 1.38923 * 120.06539 * 0.55328 * 13 12 11 15 15 N 1.39936 * 120.03657 * 179.72525 * 14 13 12 16 16 C 1.34783 * 119.99884 * 326.17829 * 15 14 13 17 17 O 1.21586 * 120.00217 * 354.72973 * 16 15 14 18 18 N 1.34776 * 120.00040 * 174.73312 * 16 15 14 19 19 C 1.49249 * 126.08020 * 179.97438 * 18 16 15 20 20 C 1.49866 * 104.69367 * 186.50567 * 19 18 16 21 21 H 1.08996 * 108.89522 * 78.07469 * 20 19 18 22 22 C 1.50011 * 127.33731 * 211.85399 * 20 19 18 23 23 C 1.56195 * 103.78319 * 149.40182 * 22 20 19 24 24 C 1.56445 * 105.66057 * 353.09633 * 23 22 20 25 25 C 1.51942 * 101.41684 * 333.62159 * 24 23 22 26 26 H 1.09004 * 111.84755 * 289.50933 * 25 24 23 27 27 C 1.49594 * 126.07959 * 359.97438 * 18 16 15 28 28 C 1.38733 * 120.04020 * 5.90475 * 10 9 7 29 29 H 0.97001 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.96473 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.93492 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.96942 * 180.29618 * 13 12 11 33 33 H 0.96998 * 120.00473 * 146.17544 * 15 14 13 34 34 H 1.09003 * 110.39149 * 67.70208 * 19 18 16 35 35 H 1.08998 * 110.48934 * 305.36261 * 19 18 16 36 36 H 1.08997 * 110.55933 * 30.83238 * 22 20 19 37 37 H 1.08992 * 110.56551 * 267.97634 * 22 20 19 38 38 H 1.09005 * 110.22071 * 112.16363 * 23 22 20 39 39 H 1.09002 * 110.22252 * 234.02065 * 23 22 20 40 40 H 1.09001 * 111.02946 * 91.61028 * 24 23 22 41 41 H 1.08995 * 111.02292 * 215.51915 * 24 23 22 42 42 H 1.09002 * 110.80686 * 324.02353 * 27 18 16 43 43 H 1.09002 * 110.80721 * 87.53126 * 27 18 16 44 44 H 1.08003 * 120.06333 * 0.04402 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9734 -2.4050 -0.1134 11 6 5.3553 -2.4928 0.0027 12 6 5.9830 -3.7178 -0.1120 13 6 5.2389 -4.8605 -0.3367 14 6 3.8575 -4.7785 -0.4594 15 7 3.1052 -5.9352 -0.6927 16 6 3.6175 -6.9329 -1.4402 17 8 4.6921 -6.7900 -1.9907 18 7 2.9385 -8.0890 -1.5774 19 6 3.3757 -9.2765 -2.3689 20 6 2.2058 -10.2123 -2.3279 21 1 1.4540 -9.8689 -3.0384 22 6 2.2394 -11.7120 -2.3425 23 6 0.9759 -12.1205 -1.5200 24 6 0.4017 -10.7869 -0.9376 25 6 1.6504 -9.9233 -0.8762 26 1 2.3386 -10.2598 -0.1009 27 6 1.6127 -8.4103 -0.9635 28 6 3.2241 -3.5495 -0.3447 29 1 -0.4850 0.8401 -0.0004 30 1 5.9392 -1.6023 0.1828 31 1 7.0573 -3.7834 -0.0218 32 1 5.7321 -5.8175 -0.4212 33 1 2.2151 -6.0189 -0.3164 34 1 4.2486 -9.7393 -1.9085 35 1 3.5967 -8.9895 -3.3969 36 1 3.1453 -12.0793 -1.8603 37 1 2.1691 -12.0866 -3.3636 38 1 0.2407 -12.5953 -2.1698 39 1 1.2550 -12.7957 -0.7111 40 1 -0.3399 -10.3541 -1.6091 41 1 -0.0169 -10.9426 0.0566 42 1 1.5279 -7.9672 0.0288 43 1 0.7976 -8.0797 -1.6073 44 1 2.1499 -3.4837 -0.4356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268198655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:16 Heat of formation + Delta-G solvation = -25.788836 kcal Electronic energy + Delta-G solvation = -25789.334920 eV Core-core repulsion = 22093.182480 eV Total energy + Delta-G solvation = -3696.152440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04499 -41.05188 -40.16807 -38.23752 -36.01965 -35.63979 -34.39508 -31.58138 -31.13312 -30.78522 -29.56115 -27.27089 -27.13024 -24.84516 -23.43878 -23.14122 -21.36115 -21.11399 -20.70319 -19.94269 -19.44188 -18.81436 -17.75442 -17.11131 -16.86026 -16.50334 -16.33094 -15.85851 -15.67118 -15.66046 -15.55393 -15.05249 -14.87659 -14.69549 -14.21283 -14.06630 -14.02169 -13.42465 -13.30791 -13.14635 -12.86817 -12.69175 -12.51983 -12.48950 -12.17242 -12.05245 -12.03901 -11.73628 -11.52774 -11.38106 -11.27000 -11.18283 -11.01661 -10.83401 -9.89325 -9.38448 -8.90730 -8.49754 -6.22276 0.40444 0.64293 1.29214 1.33827 1.37171 1.53828 1.95884 2.29271 2.66901 2.78117 2.95400 3.08129 3.11996 3.68262 3.75524 4.03676 4.08766 4.20094 4.28009 4.30114 4.33471 4.40581 4.46612 4.51947 4.57103 4.63895 4.66544 4.73239 4.79897 4.87722 4.89704 4.92536 5.06048 5.12336 5.21890 5.27811 5.34093 5.39026 5.45051 5.48415 5.52871 5.61942 5.74176 5.86970 5.92813 6.21211 6.70614 6.84809 7.32238 7.57795 8.61583 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.002767 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.730956 B =10117.150160 C =11241.105288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.082 0.918 9 O -0.239 6.239 10 C 0.143 3.857 11 C -0.202 4.202 12 C -0.050 4.050 13 C -0.193 4.193 14 C 0.201 3.799 15 N -0.675 5.675 16 C 0.718 3.282 17 O -0.610 6.610 18 N -0.641 5.641 19 C 0.145 3.855 20 C -0.119 4.119 21 H 0.078 0.922 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.114 4.114 26 H 0.089 0.911 27 C 0.104 3.896 28 C -0.256 4.256 29 H 0.285 0.715 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.414 0.586 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -24.668 -1.500 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.100 0.900 9 O -0.146 6.146 10 C 0.093 3.907 11 C -0.221 4.221 12 C -0.068 4.068 13 C -0.214 4.214 14 C 0.105 3.895 15 N -0.323 5.323 16 C 0.421 3.579 17 O -0.489 6.489 18 N -0.379 5.379 19 C 0.024 3.976 20 C -0.138 4.138 21 H 0.096 0.904 22 C -0.135 4.135 23 C -0.156 4.156 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.108 0.892 27 C -0.016 4.016 28 C -0.278 4.278 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.004 -24.229 -1.881 24.487 hybrid contribution -0.722 0.859 0.018 1.122 sum 2.282 -23.369 -1.863 23.554 Atomic orbital electron populations 1.69724 1.06829 1.29582 1.50074 1.25248 0.95868 1.02067 0.95476 0.85254 0.79009 0.77538 0.79183 1.19394 1.19170 1.18426 1.20685 0.78022 0.96108 1.52624 0.90024 1.83560 1.21320 1.26838 1.82854 1.19317 0.92817 0.84626 0.93958 1.20539 0.90604 0.99822 1.11182 1.20969 1.00647 0.89951 0.95271 1.20915 0.92011 0.99856 1.08637 1.17252 0.91286 0.84182 0.96737 1.42509 1.20298 1.15572 1.53919 1.15511 0.83305 0.79819 0.79291 1.90903 1.23320 1.81510 1.53205 1.48939 1.22463 1.12987 1.53512 1.20937 0.97579 0.83996 0.95091 1.21907 0.96885 0.96678 0.98355 0.90399 1.21463 0.99228 0.91341 1.01429 1.23004 0.96336 0.96829 0.99433 1.22015 0.95124 0.94710 1.02122 1.22723 1.00284 0.92612 0.97731 0.89243 1.22043 0.83989 0.96868 0.98744 1.20831 1.00597 0.91415 1.14969 0.90582 0.84558 0.82191 0.85501 0.74831 0.91407 0.91938 0.91031 0.90395 0.90487 0.90677 0.90600 0.90268 0.89799 0.89947 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 13.96 21.61 0.30 -54.15 16 2 C 0.01 0.69 5.49 84.83 0.47 1.16 16 3 Si 0.97 45.26 28.62 68.60 1.96 47.22 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.40 -23.26 9.90 67.92 0.67 -22.59 16 8 H 0.08 4.96 5.53 -2.91 -0.02 4.94 16 9 O -0.24 -12.95 8.58 -22.68 -0.19 -13.14 16 10 C 0.14 6.81 6.64 22.56 0.15 6.96 16 11 C -0.20 -8.00 9.99 22.41 0.22 -7.78 16 12 C -0.05 -1.72 10.03 22.23 0.22 -1.50 16 13 C -0.19 -7.24 8.65 22.43 0.19 -7.05 16 14 C 0.20 7.93 6.27 38.13 0.24 8.17 16 15 N -0.68 -22.29 5.30 -317.23 -1.68 -23.97 16 16 C 0.72 23.73 8.26 179.05 1.48 25.20 16 17 O -0.61 -24.56 14.42 -3.99 -0.06 -24.61 16 18 N -0.64 -15.47 3.42 -832.85 -2.85 -18.33 16 19 C 0.15 2.88 6.82 84.84 0.58 3.46 16 20 C -0.12 -1.55 2.63 -10.95 -0.03 -1.58 16 21 H 0.08 1.04 7.95 -2.39 -0.02 1.02 16 22 C -0.10 -0.86 6.74 30.74 0.21 -0.65 16 23 C -0.12 -0.84 6.95 32.90 0.23 -0.61 16 24 C -0.10 -0.87 6.60 31.45 0.21 -0.66 16 25 C -0.11 -1.41 3.17 -9.79 -0.03 -1.44 16 26 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 27 C 0.10 1.74 6.33 85.32 0.54 2.28 16 28 C -0.26 -11.60 9.04 22.51 0.20 -11.40 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 31 H 0.16 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.13 4.70 6.45 -2.91 -0.02 4.68 16 33 H 0.41 11.47 7.41 -92.71 -0.69 10.78 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 0.63 8.13 -2.39 -0.02 0.62 16 41 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.08 1.30 7.43 -2.39 -0.02 1.28 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.12 5.69 5.71 -2.91 -0.02 5.67 16 Total: -1.00 -71.87 355.46 3.37 -68.50 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.33 Total: 26.50 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.55 Total: -8.01 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.23 Total: -96.45 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.25 Total: -37.76 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.96 Total: 47.22 kcal Total: -71.87 3.37 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268198655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.712 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds