Wall clock time and date at job start Tue Mar 31 2020 11:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86811 * 119.99611 * 2 1 4 4 H 1.48496 * 109.47119 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46883 * 119.99920 * 3 2 1 6 6 H 1.48498 * 109.46782 * 239.99698 * 3 2 1 7 7 C 1.39019 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99990 * 162.88789 * 7 2 1 9 9 N 1.36906 * 119.99999 * 342.88536 * 7 2 1 10 10 C 1.34779 * 119.99562 * 127.81537 * 9 7 2 11 11 O 1.21625 * 119.99627 * 187.04894 * 10 9 7 12 12 C 1.47500 * 120.00376 * 7.04951 * 10 9 7 13 13 C 1.40317 * 120.50400 * 148.10658 * 12 10 9 14 14 C 1.36953 * 118.46896 * 179.72943 * 13 12 10 15 15 C 1.39153 * 119.40145 * 0.52331 * 14 13 12 16 16 O 1.35506 * 119.50956 * 179.76301 * 15 14 13 17 17 C 1.42902 * 116.99435 * 179.97438 * 16 15 14 18 18 C 1.54262 * 110.03279 * 267.16280 * 17 16 15 19 19 C 1.54893 * 104.20149 * 217.10893 * 18 17 16 20 20 C 1.54894 * 102.74396 * 37.94119 * 19 18 17 21 21 C 1.53881 * 110.03076 * 150.00037 * 17 16 15 22 22 N 1.32428 * 120.97524 * 359.74056 * 15 14 13 23 23 C 1.31694 * 121.66514 * 359.97438 * 22 15 14 24 24 C 1.46500 * 119.99944 * 307.82164 * 9 7 2 25 25 C 1.52993 * 117.50125 * 1.11278 * 24 9 7 26 26 C 1.53001 * 117.49725 * 292.48704 * 24 9 7 27 27 H 0.96996 * 120.00100 * 355.07913 * 1 2 3 28 28 H 1.08004 * 120.76427 * 359.97438 * 13 12 10 29 29 H 1.08009 * 120.29968 * 180.26458 * 14 13 12 30 30 H 1.08996 * 110.02368 * 28.60971 * 17 16 15 31 31 H 1.09005 * 110.48444 * 335.78701 * 18 17 16 32 32 H 1.09005 * 110.48803 * 98.42847 * 18 17 16 33 33 H 1.08998 * 110.75345 * 279.63246 * 19 18 17 34 34 H 1.08991 * 110.76063 * 156.25522 * 19 18 17 35 35 H 1.09001 * 110.48116 * 203.38305 * 20 19 18 36 36 H 1.08999 * 110.48504 * 80.74337 * 20 19 18 37 37 H 1.08998 * 110.03056 * 238.56681 * 21 17 16 38 38 H 1.08998 * 110.03084 * 359.97438 * 21 17 16 39 39 H 1.08004 * 119.75136 * 179.97438 * 23 22 15 40 40 H 1.09006 * 115.54609 * 146.82331 * 24 9 7 41 41 H 1.09004 * 117.49920 * 0.02562 * 25 24 9 42 42 H 1.09001 * 117.50081 * 145.02342 * 25 24 9 43 43 H 1.08997 * 117.49687 * 214.98111 * 26 24 9 44 44 H 1.08997 * 117.49922 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6179 0.0000 4 1 1.2827 2.7465 -0.0006 5 1 3.1015 1.6966 1.2125 6 1 3.1015 1.6965 -1.2125 7 6 2.0090 -1.2039 0.0005 8 1 3.0531 -1.2246 -0.2747 9 7 1.3700 -2.3632 0.3500 10 6 1.4266 -3.4356 -0.4644 11 8 0.7568 -4.4209 -0.2199 12 6 2.3009 -3.4144 -1.6522 13 6 2.9005 -4.5950 -2.1164 14 6 3.7001 -4.5284 -3.2263 15 6 3.9022 -3.3011 -3.8500 16 8 4.6968 -3.2319 -4.9455 17 6 4.8666 -1.9451 -5.5434 18 6 3.8244 -1.7406 -6.6622 19 6 4.5904 -0.9560 -7.7562 20 6 6.0010 -1.5940 -7.7099 21 6 6.2506 -1.8519 -6.2095 22 7 3.3291 -2.1998 -3.3891 23 6 2.5485 -2.2185 -2.3286 24 6 0.6247 -2.4379 1.6090 25 6 0.5762 -1.1790 2.4771 26 6 1.4274 -2.3744 2.9100 27 1 -0.4850 0.8369 0.0721 28 1 2.7321 -5.5353 -1.6124 29 1 4.1729 -5.4199 -3.6115 30 1 4.7625 -1.1660 -4.7882 31 1 3.4859 -2.7020 -7.0485 32 1 2.9799 -1.1572 -6.2950 33 1 4.6378 0.1046 -7.5092 34 1 4.1304 -1.1061 -8.7328 35 1 6.7451 -0.9037 -8.1072 36 1 6.0140 -2.5317 -8.2655 37 1 6.8178 -1.0271 -5.7782 38 1 6.7928 -2.7880 -6.0764 39 1 2.0972 -1.3016 -1.9790 40 1 -0.2605 -3.0739 1.5942 41 1 1.0985 -0.2950 2.1112 42 1 -0.3410 -0.9864 3.0336 43 1 1.0701 -2.9683 3.7512 44 1 2.5100 -2.2775 2.8291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272696922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:37 Heat of formation + Delta-G solvation = -3.468458 kcal Electronic energy + Delta-G solvation = -26634.515378 eV Core-core repulsion = 22939.330822 eV Total energy + Delta-G solvation = -3695.184556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.38629 -39.11205 -38.02120 -36.29712 -35.85479 -33.37408 -31.99273 -31.59980 -29.86423 -28.80804 -27.78050 -25.39028 -23.70690 -23.11880 -21.43017 -21.05233 -20.81418 -20.10717 -19.45390 -18.26408 -17.36046 -16.76414 -15.94449 -15.43957 -15.40576 -15.15993 -14.79633 -14.56977 -13.95774 -13.77261 -13.64872 -13.45286 -13.26217 -12.82569 -12.69287 -12.38847 -12.13487 -12.05392 -11.84705 -11.49041 -11.27916 -11.24997 -11.16198 -10.93894 -10.80367 -10.68583 -10.48700 -10.45973 -10.39124 -9.82000 -9.45197 -9.39301 -9.27562 -8.75459 -8.57810 -7.91080 -7.37725 -6.48698 -4.36134 1.51068 1.80567 3.06226 3.13723 3.15494 3.29167 3.77351 3.96819 4.39748 4.48870 4.50503 4.56855 4.68757 4.80414 4.91179 5.13115 5.31650 5.39018 5.39591 5.46096 5.52717 5.56055 5.63767 5.65779 5.75310 5.78233 5.90993 5.93784 5.94604 6.07707 6.12098 6.15959 6.16183 6.21476 6.29881 6.43845 6.52981 6.73764 6.85520 7.00003 7.05420 7.21870 7.28182 7.66632 7.94416 8.19137 8.39598 8.87120 9.33030 9.78868 10.49235 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.004097 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.347047 B = 6832.964971 C = 8113.766071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.409 5.409 10 C 0.538 3.462 11 O -0.595 6.595 12 C -0.189 4.189 13 C -0.006 4.006 14 C -0.212 4.212 15 C 0.319 3.681 16 O -0.304 6.304 17 C 0.084 3.916 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.125 4.125 22 N -0.552 5.552 23 C 0.185 3.815 24 C 0.109 3.891 25 C -0.150 4.150 26 C -0.214 4.214 27 H 0.273 0.727 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.205 0.795 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -0.262 -8.750 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.149 4.149 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.105 0.895 9 N -0.126 5.126 10 C 0.327 3.673 11 O -0.480 6.480 12 C -0.194 4.194 13 C -0.032 4.032 14 C -0.233 4.233 15 C 0.140 3.860 16 O -0.212 6.212 17 C 0.027 3.973 18 C -0.178 4.178 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.162 4.162 22 N -0.276 5.276 23 C 0.030 3.970 24 C 0.004 3.996 25 C -0.187 4.187 26 C -0.253 4.253 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.459 -0.010 -9.259 12.541 hybrid contribution 0.191 0.353 0.586 0.710 sum 8.649 0.343 -8.673 12.253 Atomic orbital electron populations 1.70022 1.06063 1.28595 1.41824 1.25463 0.95093 0.99575 0.94787 0.86500 0.79937 0.81666 0.79856 1.20509 1.19405 1.18922 1.19156 0.94690 0.84805 1.50455 0.89535 1.42544 1.45368 1.10311 1.14409 1.18029 0.82854 0.84130 0.82239 1.90629 1.46670 1.35574 1.75170 1.20827 1.03606 0.94643 1.00334 1.21156 0.90980 0.98267 0.92774 1.20541 1.06502 0.96688 0.99562 1.20095 0.88899 0.90532 0.86436 1.86230 1.62666 1.33207 1.39091 1.23025 0.94695 0.84629 0.94932 1.22802 0.98390 1.01098 0.95495 1.22443 0.95389 0.99584 0.98670 1.22335 0.97120 1.00763 0.95733 1.22269 0.95764 1.02738 0.95445 1.67578 1.14233 1.28971 1.16774 1.24380 0.87806 0.99748 0.85111 1.21180 0.96135 1.00721 0.81584 1.23054 1.00196 0.93807 1.01683 1.23342 0.98901 1.03906 0.99180 0.91611 0.84247 0.84798 0.88666 0.90895 0.90645 0.91201 0.91350 0.91474 0.91439 0.90699 0.90471 0.77859 0.87656 0.87380 0.90493 0.90218 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.48 11.90 55.50 0.66 -19.82 16 2 C 0.06 1.42 2.76 -17.45 -0.05 1.37 16 3 Si 0.90 18.12 29.32 -169.99 -4.98 13.14 16 4 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.36 -8.58 5.24 -15.00 -0.08 -8.66 16 8 H 0.09 2.03 6.76 -52.49 -0.35 1.68 16 9 N -0.41 -9.97 2.71 -108.91 -0.30 -10.27 16 10 C 0.54 13.25 7.41 -12.48 -0.09 13.16 16 11 O -0.60 -15.84 16.60 5.26 0.09 -15.75 16 12 C -0.19 -4.09 5.61 -104.83 -0.59 -4.68 16 13 C -0.01 -0.11 9.68 -39.27 -0.38 -0.49 16 14 C -0.21 -3.57 9.97 -39.71 -0.40 -3.97 16 15 C 0.32 5.70 7.49 -16.96 -0.13 5.58 16 16 O -0.30 -4.85 9.66 -18.21 -0.18 -5.02 16 17 C 0.08 1.15 3.16 -25.61 -0.08 1.07 16 18 C -0.14 -1.75 6.56 -25.07 -0.16 -1.91 16 19 C -0.12 -1.20 6.91 -24.73 -0.17 -1.37 16 20 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 21 C -0.12 -1.34 6.61 -25.61 -0.17 -1.51 16 22 N -0.55 -10.74 8.61 -12.93 -0.11 -10.85 16 23 C 0.18 3.90 9.13 -17.10 -0.16 3.75 16 24 C 0.11 2.51 5.64 -67.93 -0.38 2.12 16 25 C -0.15 -3.13 8.46 -26.73 -0.23 -3.36 16 26 C -0.21 -4.24 10.39 -26.73 -0.28 -4.51 16 27 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 28 H 0.14 2.41 8.01 -52.48 -0.42 1.99 16 29 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.10 1.46 6.96 -51.93 -0.36 1.10 16 31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.83 7.95 -51.93 -0.41 0.42 16 39 H 0.21 4.62 4.98 -52.48 -0.26 4.36 16 40 H 0.11 2.51 7.77 -51.93 -0.40 2.11 16 41 H 0.11 2.42 5.07 -51.93 -0.26 2.16 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -27.21 357.20 -9.21 -36.42 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.26 Total: 11.46 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.51 Total: -4.70 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.25 Total: -40.93 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.09 Total: -20.77 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.98 Total: 13.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.21 -9.21 -36.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272696922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.947 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds