Wall clock time and date at job start Tue Mar 31 2020 11:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86811 * 119.99611 * 2 1 4 4 H 1.48496 * 109.47119 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46883 * 119.99920 * 3 2 1 6 6 H 1.48498 * 109.46782 * 239.99698 * 3 2 1 7 7 C 1.39019 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99990 * 162.88789 * 7 2 1 9 9 N 1.36906 * 119.99999 * 342.88536 * 7 2 1 10 10 C 1.34779 * 119.99562 * 127.81537 * 9 7 2 11 11 O 1.21625 * 119.99627 * 187.04894 * 10 9 7 12 12 C 1.47500 * 120.00376 * 7.04951 * 10 9 7 13 13 C 1.40317 * 120.50400 * 148.10658 * 12 10 9 14 14 C 1.36953 * 118.46896 * 179.72943 * 13 12 10 15 15 C 1.39153 * 119.40145 * 0.52331 * 14 13 12 16 16 O 1.35506 * 119.50956 * 179.76301 * 15 14 13 17 17 C 1.42902 * 116.99435 * 179.97438 * 16 15 14 18 18 C 1.54262 * 110.03279 * 267.16280 * 17 16 15 19 19 C 1.54893 * 104.20149 * 217.10893 * 18 17 16 20 20 C 1.54894 * 102.74396 * 37.94119 * 19 18 17 21 21 C 1.53881 * 110.03076 * 150.00037 * 17 16 15 22 22 N 1.32428 * 120.97524 * 359.74056 * 15 14 13 23 23 C 1.31694 * 121.66514 * 359.97438 * 22 15 14 24 24 C 1.46500 * 119.99944 * 307.82164 * 9 7 2 25 25 C 1.52993 * 117.50125 * 1.11278 * 24 9 7 26 26 C 1.53001 * 117.49725 * 292.48704 * 24 9 7 27 27 H 0.96996 * 120.00100 * 355.07913 * 1 2 3 28 28 H 1.08004 * 120.76427 * 359.97438 * 13 12 10 29 29 H 1.08009 * 120.29968 * 180.26458 * 14 13 12 30 30 H 1.08996 * 110.02368 * 28.60971 * 17 16 15 31 31 H 1.09005 * 110.48444 * 335.78701 * 18 17 16 32 32 H 1.09005 * 110.48803 * 98.42847 * 18 17 16 33 33 H 1.08998 * 110.75345 * 279.63246 * 19 18 17 34 34 H 1.08991 * 110.76063 * 156.25522 * 19 18 17 35 35 H 1.09001 * 110.48116 * 203.38305 * 20 19 18 36 36 H 1.08999 * 110.48504 * 80.74337 * 20 19 18 37 37 H 1.08998 * 110.03056 * 238.56681 * 21 17 16 38 38 H 1.08998 * 110.03084 * 359.97438 * 21 17 16 39 39 H 1.08004 * 119.75136 * 179.97438 * 23 22 15 40 40 H 1.09006 * 115.54609 * 146.82331 * 24 9 7 41 41 H 1.09004 * 117.49920 * 0.02562 * 25 24 9 42 42 H 1.09001 * 117.50081 * 145.02342 * 25 24 9 43 43 H 1.08997 * 117.49687 * 214.98111 * 26 24 9 44 44 H 1.08997 * 117.49922 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6179 0.0000 4 1 1.2827 2.7465 -0.0006 5 1 3.1015 1.6966 1.2125 6 1 3.1015 1.6965 -1.2125 7 6 2.0090 -1.2039 0.0005 8 1 3.0531 -1.2246 -0.2747 9 7 1.3700 -2.3632 0.3500 10 6 1.4266 -3.4356 -0.4644 11 8 0.7568 -4.4209 -0.2199 12 6 2.3009 -3.4144 -1.6522 13 6 2.9005 -4.5950 -2.1164 14 6 3.7001 -4.5284 -3.2263 15 6 3.9022 -3.3011 -3.8500 16 8 4.6968 -3.2319 -4.9455 17 6 4.8666 -1.9451 -5.5434 18 6 3.8244 -1.7406 -6.6622 19 6 4.5904 -0.9560 -7.7562 20 6 6.0010 -1.5940 -7.7099 21 6 6.2506 -1.8519 -6.2095 22 7 3.3291 -2.1998 -3.3891 23 6 2.5485 -2.2185 -2.3286 24 6 0.6247 -2.4379 1.6090 25 6 0.5762 -1.1790 2.4771 26 6 1.4274 -2.3744 2.9100 27 1 -0.4850 0.8369 0.0721 28 1 2.7321 -5.5353 -1.6124 29 1 4.1729 -5.4199 -3.6115 30 1 4.7625 -1.1660 -4.7882 31 1 3.4859 -2.7020 -7.0485 32 1 2.9799 -1.1572 -6.2950 33 1 4.6378 0.1046 -7.5092 34 1 4.1304 -1.1061 -8.7328 35 1 6.7451 -0.9037 -8.1072 36 1 6.0140 -2.5317 -8.2655 37 1 6.8178 -1.0271 -5.7782 38 1 6.7928 -2.7880 -6.0764 39 1 2.0972 -1.3016 -1.9790 40 1 -0.2605 -3.0739 1.5942 41 1 1.0985 -0.2950 2.1112 42 1 -0.3410 -0.9864 3.0336 43 1 1.0701 -2.9683 3.7512 44 1 2.5100 -2.2775 2.8291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272696922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:35 Heat of formation + Delta-G solvation = -18.034385 kcal Electronic energy + Delta-G solvation = -26635.147004 eV Core-core repulsion = 22939.330822 eV Total energy + Delta-G solvation = -3695.816182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85435 -40.68077 -39.40867 -37.95018 -37.14457 -35.13653 -33.50858 -33.43863 -31.35617 -29.69131 -28.82114 -27.23918 -25.26842 -24.60794 -23.05975 -22.68500 -21.67340 -21.30345 -21.18211 -19.61604 -19.06348 -18.38207 -17.43289 -17.02480 -16.59462 -16.52082 -16.35399 -15.85249 -15.67464 -15.35679 -15.13921 -14.82632 -14.30950 -14.29379 -14.19315 -13.89871 -13.74384 -13.55846 -13.28651 -12.95298 -12.81392 -12.69251 -12.13131 -12.08137 -12.06766 -11.99458 -11.83658 -11.60579 -11.55305 -11.42573 -11.14434 -10.97350 -10.89277 -10.47124 -10.35764 -9.43288 -9.21081 -8.29638 -6.22032 -0.05537 0.30716 1.43478 1.46957 1.53709 1.99649 2.03740 2.26125 2.74717 2.83028 2.99043 3.35100 3.43170 3.60682 3.63484 3.94761 4.04251 4.09637 4.14471 4.19506 4.26613 4.35984 4.44501 4.47886 4.48999 4.51057 4.67277 4.74947 4.76297 4.86105 4.91342 4.96660 5.01484 5.07148 5.12558 5.18607 5.24229 5.27059 5.36119 5.39851 5.42778 5.51807 5.56954 6.11222 6.28083 6.35424 6.86084 7.03490 7.46933 7.94536 8.69719 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.004097 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.347047 B = 6832.964971 C = 8113.766071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.037 3.963 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.415 5.415 10 C 0.523 3.477 11 O -0.628 6.628 12 C -0.214 4.214 13 C -0.003 4.003 14 C -0.197 4.197 15 C 0.320 3.680 16 O -0.300 6.300 17 C 0.073 3.927 18 C -0.141 4.141 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.121 4.121 22 N -0.558 5.558 23 C 0.180 3.820 24 C 0.072 3.928 25 C -0.141 4.141 26 C -0.185 4.185 27 H 0.275 0.725 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.185 0.815 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 -0.032 -9.848 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.171 4.171 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.494 4.494 8 H 0.102 0.898 9 N -0.131 5.131 10 C 0.313 3.687 11 O -0.517 6.517 12 C -0.219 4.219 13 C -0.029 4.029 14 C -0.217 4.217 15 C 0.140 3.860 16 O -0.208 6.208 17 C 0.017 3.983 18 C -0.179 4.179 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.158 4.158 22 N -0.282 5.282 23 C 0.025 3.975 24 C -0.033 4.033 25 C -0.179 4.179 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.170 0.830 29 H 0.189 0.811 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.201 0.799 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.617 0.239 -10.355 14.833 hybrid contribution -0.450 0.245 0.835 0.979 sum 10.168 0.484 -9.521 13.938 Atomic orbital electron populations 1.70107 1.07363 1.29337 1.42999 1.26007 0.95458 1.01734 0.93931 0.85627 0.78780 0.78205 0.79839 1.20345 1.18792 1.18877 1.19228 0.94539 0.84873 1.50759 0.89786 1.42754 1.45016 1.10466 1.14867 1.18564 0.83130 0.83927 0.83039 1.90576 1.48201 1.36626 1.76277 1.20735 1.04904 0.96138 1.00165 1.21323 0.90642 0.97689 0.93215 1.20869 1.05053 0.97593 0.98159 1.20378 0.88377 0.90492 0.86718 1.86253 1.61783 1.34553 1.38164 1.23324 0.97176 0.83028 0.94796 1.22792 0.97905 1.01129 0.96106 1.22447 0.95511 0.99391 0.98190 1.22340 0.96987 1.01571 0.94386 1.22301 0.93700 1.03316 0.96511 1.67536 1.14289 1.30087 1.16327 1.23919 0.88665 0.98938 0.86026 1.21286 0.96923 1.02499 0.82594 1.23001 1.01012 0.92923 1.00932 1.23362 0.98477 1.02764 0.97782 0.91495 0.82968 0.81050 0.90632 0.91264 0.92474 0.90790 0.89868 0.89351 0.90792 0.89690 0.90230 0.79892 0.89496 0.88731 0.88912 0.87270 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.44 11.90 21.68 0.26 -43.18 16 2 C 0.04 1.71 2.76 84.95 0.23 1.95 16 3 Si 0.95 37.33 29.32 68.60 2.01 39.34 16 4 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.37 -17.72 5.24 84.09 0.44 -17.28 16 8 H 0.08 4.05 6.76 -2.91 -0.02 4.03 16 9 N -0.42 -20.86 2.71 -616.73 -1.67 -22.54 16 10 C 0.52 26.72 7.41 86.68 0.64 27.36 16 11 O -0.63 -34.75 16.60 -4.11 -0.07 -34.82 16 12 C -0.21 -9.51 5.61 -20.00 -0.11 -9.62 16 13 C 0.00 -0.10 9.68 22.47 0.22 0.11 16 14 C -0.20 -6.25 9.97 22.19 0.22 -6.03 16 15 C 0.32 11.10 7.49 84.82 0.63 11.74 16 16 O -0.30 -9.09 9.66 -88.08 -0.85 -9.94 16 17 C 0.07 1.92 3.16 31.32 0.10 2.02 16 18 C -0.14 -3.40 6.56 31.67 0.21 -3.19 16 19 C -0.12 -2.02 6.91 31.89 0.22 -1.80 16 20 C -0.12 -1.72 6.83 31.67 0.22 -1.51 16 21 C -0.12 -2.31 6.61 31.32 0.21 -2.11 16 22 N -0.56 -21.90 8.61 -307.70 -2.65 -24.55 16 23 C 0.18 7.82 9.13 85.04 0.78 8.60 16 24 C 0.07 3.38 5.64 44.99 0.25 3.63 16 25 C -0.14 -5.87 8.46 30.59 0.26 -5.61 16 26 C -0.19 -7.16 10.39 30.60 0.32 -6.84 16 27 H 0.28 13.08 8.31 -92.71 -0.77 12.30 16 28 H 0.15 5.15 8.01 -2.91 -0.02 5.12 16 29 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.08 2.30 6.96 -2.39 -0.02 2.28 16 31 H 0.07 1.70 8.08 -2.38 -0.02 1.68 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.50 7.95 -2.39 -0.02 1.49 16 39 H 0.18 8.71 4.98 -2.91 -0.01 8.69 16 40 H 0.09 4.34 7.77 -2.38 -0.02 4.32 16 41 H 0.09 4.22 5.07 -2.39 -0.01 4.21 16 42 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.11 3.55 8.14 -2.39 -0.02 3.54 16 44 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -60.16 357.20 2.87 -57.29 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 1.01 Total: 36.97 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.84 Total: 1.43 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -4.06 Total: -90.27 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.92 Total: -44.76 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.01 Total: 39.34 kcal Total: -60.16 2.87 -57.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272696922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.252 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds