Wall clock time and date at job start Tue Mar 31 2020 10:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47194 * 239.99720 * 3 2 1 5 5 H 1.48496 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47122 * 120.00157 * 3 2 1 7 7 C 1.38656 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00542 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99510 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99764 * 185.04161 * 9 7 2 11 11 C 1.38952 * 120.03742 * 354.98270 * 10 9 7 12 12 C 1.38118 * 120.06870 * 180.25530 * 11 10 9 13 13 C 1.38201 * 120.14248 * 359.49010 * 12 11 10 14 14 C 1.38915 * 120.06426 * 0.25829 * 13 12 11 15 15 N 1.39945 * 120.03387 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00147 * 144.89204 * 15 14 13 17 17 O 1.21588 * 120.00018 * 4.73212 * 16 15 14 18 18 N 1.34773 * 119.99912 * 184.73796 * 16 15 14 19 19 C 1.46862 * 120.67694 * 185.08184 * 18 16 15 20 20 C 1.52618 * 109.52203 * 236.52730 * 19 18 16 21 21 C 1.53199 * 109.50532 * 302.50079 * 20 19 18 22 22 C 1.53142 * 108.98661 * 57.81095 * 21 20 19 23 23 C 1.52790 * 117.78783 * 90.35755 * 22 21 20 24 24 C 1.52754 * 117.84554 * 159.34307 * 22 21 20 25 25 C 1.47148 * 120.67688 * 5.36000 * 18 16 15 26 26 C 1.38734 * 120.03100 * 174.73125 * 10 9 7 27 27 H 0.97003 * 119.99913 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.96207 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.92765 * 179.77386 * 12 11 10 30 30 H 1.08000 * 119.96678 * 180.27504 * 13 12 11 31 31 H 0.96999 * 119.99730 * 324.88591 * 15 14 13 32 32 H 1.09003 * 109.50764 * 356.50439 * 19 18 16 33 33 H 1.08996 * 109.50828 * 116.63112 * 19 18 16 34 34 H 1.09001 * 109.54891 * 182.41886 * 20 19 18 35 35 H 1.09008 * 109.33324 * 62.44346 * 20 19 18 36 36 H 1.09004 * 109.54594 * 297.96354 * 21 20 19 37 37 H 1.08998 * 109.63455 * 177.71725 * 21 20 19 38 38 H 1.09006 * 117.49823 * 215.29944 * 23 22 21 39 39 H 1.09003 * 117.50613 * 0.35007 * 23 22 21 40 40 H 1.09000 * 117.51002 * 359.74310 * 24 22 21 41 41 H 1.09009 * 117.49970 * 144.76569 * 24 22 21 42 42 H 1.08999 * 109.74733 * 249.31290 * 25 18 16 43 43 H 1.08996 * 109.75339 * 10.04663 * 25 18 16 44 44 H 1.07999 * 120.07497 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1052 11 6 3.4579 -3.4377 0.1022 12 6 4.2067 -4.5938 0.2044 13 6 3.5787 -5.8193 0.3207 14 6 2.1915 -5.8924 0.3296 15 7 1.5562 -7.1338 0.4479 16 6 0.4005 -7.2367 1.1335 17 8 -0.1350 -6.2387 1.5758 18 7 -0.1616 -8.4460 1.3290 19 6 -1.4745 -8.5662 1.9761 20 6 -1.3594 -9.4726 3.1986 21 6 -0.8176 -10.8405 2.7720 22 6 0.5385 -10.6478 2.0871 23 6 1.7908 -10.6929 2.9613 24 6 1.4768 -11.8508 2.0111 25 6 0.5303 -9.6731 0.9039 26 6 1.4364 -4.7333 0.2217 27 1 -0.4850 0.8401 -0.0004 28 1 3.9516 -2.4811 0.0152 29 1 5.2853 -4.5394 0.1981 30 1 4.1670 -6.7211 0.4049 31 1 1.9477 -7.9200 0.0363 32 1 -1.8185 -7.5798 2.2876 33 1 -2.1885 -8.9962 1.2738 34 1 -2.3418 -9.5967 3.6544 35 1 -0.6784 -9.0208 3.9200 36 1 -1.5145 -11.3080 2.0762 37 1 -0.6963 -11.4762 3.6490 38 1 2.6152 -10.0318 2.6941 39 1 1.6536 -10.8662 4.0287 40 1 1.1334 -12.7859 2.4534 41 1 2.0946 -11.9517 1.1187 42 1 0.0024 -10.1206 0.0618 43 1 1.5542 -9.4371 0.6142 44 1 0.3578 -4.7877 0.2280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274454218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:01 Heat of formation + Delta-G solvation = 9.122831 kcal Electronic energy + Delta-G solvation = -26115.490303 eV Core-core repulsion = 22420.851746 eV Total energy + Delta-G solvation = -3694.638557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76642 -39.23963 -38.38203 -36.59708 -35.22933 -34.21729 -32.54069 -32.16261 -29.37111 -28.42659 -28.17501 -25.73416 -25.17814 -23.09020 -22.64951 -21.88695 -21.20186 -20.22708 -18.93630 -18.47475 -17.85041 -16.97083 -16.13728 -15.72362 -15.40984 -15.06156 -14.98318 -14.67543 -14.47628 -14.17467 -14.01861 -13.70360 -13.48358 -13.22598 -13.04089 -12.87460 -12.60047 -12.41170 -11.89125 -11.77759 -11.63896 -11.49845 -11.31772 -11.11723 -11.05989 -10.93458 -10.72935 -10.46062 -10.43686 -10.07880 -9.83735 -9.62848 -9.15255 -8.75882 -8.69333 -7.59535 -7.11408 -6.35766 -3.94955 2.15541 2.41683 2.59969 3.18068 3.19247 3.22414 3.31683 3.44039 3.89857 4.05822 4.18954 4.36655 4.54852 4.55651 4.67131 4.80460 4.95930 5.08737 5.18505 5.20643 5.30426 5.32925 5.35664 5.44827 5.56033 5.58993 5.66444 5.68300 5.72107 5.79968 5.88064 5.91778 6.05557 6.15735 6.27336 6.33536 6.50635 6.65862 6.91098 7.09195 7.13332 7.25791 7.40947 7.56179 7.89052 8.02280 8.09369 8.72997 9.08957 9.81375 10.82211 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002853 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.988195 B = 9812.018183 C =10665.944379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.247 4.247 12 C -0.059 4.059 13 C -0.238 4.238 14 C 0.192 3.808 15 N -0.682 5.682 16 C 0.703 3.297 17 O -0.557 6.557 18 N -0.626 5.626 19 C 0.128 3.872 20 C -0.133 4.133 21 C -0.079 4.079 22 C -0.142 4.142 23 C -0.168 4.168 24 C -0.168 4.168 25 C 0.149 3.851 26 C -0.186 4.186 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -23.843 3.050 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.259 4.259 14 C 0.098 3.902 15 N -0.331 5.331 16 C 0.405 3.595 17 O -0.432 6.432 18 N -0.365 5.365 19 C 0.005 3.995 20 C -0.172 4.172 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.205 4.205 24 C -0.206 4.206 25 C 0.026 3.974 26 C -0.207 4.207 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.187 -22.883 3.374 23.161 hybrid contribution 0.872 0.239 -0.140 0.915 sum 2.059 -22.644 3.234 22.966 Atomic orbital electron populations 1.70048 1.05955 1.27663 1.45958 1.25292 0.95821 0.98792 0.96651 0.85788 0.78672 0.79858 0.79118 1.19542 1.20334 1.19525 1.21294 0.91768 0.80857 1.52885 0.89079 1.83995 1.34205 1.11309 1.78184 1.19142 0.89980 0.87852 0.91760 1.21166 0.93769 0.98998 1.12714 1.20467 0.98298 0.91660 0.97330 1.20223 0.91776 0.97670 1.16231 1.16969 0.90531 0.83268 0.99425 1.42637 1.24403 1.10151 1.55886 1.15851 0.80848 0.83437 0.79316 1.91009 1.62954 1.34567 1.54684 1.47232 1.21094 1.03912 1.64230 1.21303 0.82725 1.01826 0.93600 1.21827 1.01745 0.95350 0.98234 1.21097 0.93837 0.97159 0.99507 1.21769 0.92843 0.99767 0.99906 1.23027 0.98562 1.01498 0.97398 1.22976 1.02551 0.92971 1.02075 1.21175 0.97204 0.84231 0.94830 1.20206 1.00784 0.89123 1.10634 0.92027 0.85513 0.87111 0.87613 0.76456 0.88462 0.91744 0.90527 0.91303 0.91297 0.91629 0.88715 0.88750 0.88576 0.88575 0.90805 0.90451 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.28 13.67 55.48 0.76 -25.52 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -11.38 9.49 30.89 0.29 -11.09 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.17 -5.27 9.75 0.04 0.00 -5.27 16 10 C 0.17 4.34 6.65 -39.13 -0.26 4.08 16 11 C -0.25 -5.57 9.17 -39.36 -0.36 -5.94 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.24 -4.20 9.96 -39.34 -0.39 -4.60 16 14 C 0.19 3.75 6.30 -83.71 -0.53 3.23 16 15 N -0.68 -10.68 5.19 -14.24 -0.07 -10.76 16 16 C 0.70 11.95 8.15 -86.92 -0.71 11.24 16 17 O -0.56 -12.27 13.18 5.29 0.07 -12.20 16 18 N -0.63 -7.76 2.98 -178.66 -0.53 -8.30 16 19 C 0.13 1.42 6.31 -4.04 -0.03 1.40 16 20 C -0.13 -1.16 6.07 -26.82 -0.16 -1.33 16 21 C -0.08 -0.56 5.64 -26.56 -0.15 -0.71 16 22 C -0.14 -1.09 2.10 -154.51 -0.32 -1.41 16 23 C -0.17 -1.31 9.92 -26.82 -0.27 -1.57 16 24 C -0.17 -1.04 9.99 -26.84 -0.27 -1.31 16 25 C 0.15 1.30 6.06 -3.53 -0.02 1.28 16 26 C -0.19 -4.46 8.64 -39.21 -0.34 -4.80 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.40 4.64 6.46 -40.82 -0.26 4.37 16 32 H 0.10 1.32 6.98 -51.93 -0.36 0.96 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.61 5.79 -51.93 -0.30 0.31 16 44 H 0.14 3.51 6.22 -52.49 -0.33 3.19 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -35.06 357.71 -9.44 -44.51 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.03 Total: 8.07 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -4.01 Total: -12.03 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.15 Total: -44.58 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.07 Total: -17.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.06 -9.44 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274454218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.631 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds