Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48507 * 109.47022 * 269.99936 * 3 2 1 5 5 H 1.48497 * 109.47230 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47221 * 150.00286 * 3 2 1 7 7 C 1.38649 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00605 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99936 * 185.41168 * 9 7 2 11 11 C 1.38955 * 120.03299 * 5.91242 * 10 9 7 12 12 C 1.38123 * 120.06895 * 180.02562 * 11 10 9 13 13 C 1.38195 * 120.14230 * 359.97438 * 12 11 10 14 14 C 1.38924 * 120.06563 * 0.02562 * 13 12 11 15 15 N 1.39926 * 120.03281 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99514 * 146.40876 * 15 14 13 17 17 O 1.21289 * 120.00401 * 354.79738 * 16 15 14 18 18 C 1.50702 * 120.00013 * 174.80214 * 16 15 14 19 19 H 1.09001 * 110.06299 * 300.24924 * 18 16 15 20 20 C 1.53988 * 109.91714 * 61.45325 * 18 16 15 21 21 C 1.54594 * 105.14295 * 120.58176 * 20 18 16 22 22 C 1.54940 * 102.92141 * 21.95350 * 21 20 18 23 23 N 1.47897 * 109.91815 * 179.04224 * 18 16 15 24 24 C 1.46903 * 111.00205 * 94.80374 * 23 18 16 25 25 C 1.53001 * 117.50116 * 243.62518 * 24 23 18 26 26 C 1.53000 * 117.50211 * 174.99909 * 24 23 18 27 27 C 1.38735 * 120.03379 * 186.16678 * 10 9 7 28 28 H 0.97003 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.96228 * 359.97438 * 11 10 9 30 30 H 1.08005 * 119.92494 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.97061 * 180.02562 * 13 12 11 32 32 H 0.96995 * 120.00753 * 326.40923 * 15 14 13 33 33 H 1.09006 * 110.31143 * 239.49788 * 20 18 16 34 34 H 1.08996 * 110.31023 * 1.56206 * 20 18 16 35 35 H 1.09003 * 110.72965 * 140.31628 * 21 20 18 36 36 H 1.09001 * 110.72311 * 263.59923 * 21 20 18 37 37 H 1.08996 * 110.66253 * 81.02058 * 22 21 20 38 38 H 1.08996 * 110.66801 * 203.98914 * 22 21 20 39 39 H 1.09007 * 115.54650 * 29.32604 * 24 23 18 40 40 H 1.09003 * 117.49416 * 359.97438 * 25 24 23 41 41 H 1.08995 * 117.50430 * 145.01422 * 25 24 23 42 42 H 1.08996 * 117.49919 * 214.97956 * 26 24 23 43 43 H 1.08999 * 117.49574 * 359.97438 * 26 24 23 44 44 H 1.08000 * 120.07070 * 0.04309 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0693 -3.5042 0.1152 11 6 3.4369 -3.4273 0.3487 12 6 4.1852 -4.5825 0.4649 13 6 3.5767 -5.8179 0.3499 14 6 2.2098 -5.9015 0.1165 15 7 1.5945 -7.1528 -0.0004 16 6 0.3320 -7.3264 0.4381 17 8 -0.2376 -6.4265 1.0187 18 6 -0.3722 -8.6386 0.2073 19 1 -0.4376 -8.8450 -0.8610 20 6 0.3895 -9.7743 0.9153 21 6 -0.6255 -10.3824 1.9101 22 6 -1.9915 -9.9604 1.3129 23 7 -1.7283 -8.5931 0.7957 24 6 -2.7267 -8.2102 -0.2116 25 6 -3.4791 -6.8955 0.0036 26 6 -4.1978 -8.2306 0.2083 27 6 1.4563 -4.7429 -0.0060 28 1 -0.4850 0.8401 0.0004 29 1 3.9154 -2.4633 0.4386 30 1 5.2480 -4.5200 0.6469 31 1 4.1644 -6.7194 0.4417 32 1 2.0765 -7.8952 -0.3969 33 1 0.7067 -10.5256 0.1919 34 1 1.2524 -9.3759 1.4489 35 1 -0.5356 -11.4684 1.9377 36 1 -0.4920 -9.9580 2.9052 37 1 -2.2800 -10.6294 0.5022 38 1 -2.7598 -9.9408 2.0857 39 1 -2.4921 -8.4940 -1.2376 40 1 -3.2336 -6.3149 0.8929 41 1 -3.7396 -6.3140 -0.8807 42 1 -4.9311 -8.5276 -0.5414 43 1 -4.4248 -8.5287 1.2319 44 1 0.3943 -4.8052 -0.1923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279497691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = 9.847866 kcal Electronic energy + Delta-G solvation = -26149.357979 eV Core-core repulsion = 22454.750862 eV Total energy + Delta-G solvation = -3694.607117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50126 -39.13749 -38.14500 -36.39403 -35.97500 -33.96167 -32.19995 -30.45054 -30.25223 -29.19048 -27.99779 -25.25548 -23.67695 -22.51861 -22.14856 -21.50546 -21.20501 -20.54799 -19.76230 -18.20318 -17.52208 -16.86381 -16.63584 -15.75091 -15.28311 -15.02098 -14.82391 -14.65924 -14.21796 -14.12153 -13.68866 -13.56515 -13.46979 -13.31509 -12.87180 -12.70365 -12.44094 -12.11378 -11.76055 -11.68613 -11.60413 -11.40330 -11.30527 -11.13770 -11.03607 -10.92247 -10.71839 -10.44150 -10.42718 -10.20706 -9.70335 -9.57503 -9.15922 -8.76760 -8.48622 -7.61214 -7.12635 -6.37576 -3.96846 2.07855 2.39664 2.98189 3.09503 3.17297 3.18891 3.23026 3.72417 3.80247 4.02641 4.31250 4.42460 4.59762 4.65588 4.88410 4.91033 4.97052 4.99413 5.16163 5.17841 5.24491 5.34948 5.43183 5.47557 5.53652 5.60154 5.64956 5.66993 5.76890 5.87841 5.88813 6.07382 6.16175 6.28436 6.33488 6.42630 6.56467 6.77560 6.91328 6.99031 7.09050 7.13603 7.39056 7.52691 7.80836 7.86367 8.07100 8.52821 9.07249 9.79284 10.80367 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003330 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.541807 B = 8407.375406 C = 9918.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.238 4.238 14 C 0.182 3.818 15 N -0.675 5.675 16 C 0.512 3.488 17 O -0.480 6.480 18 C 0.054 3.946 19 H 0.080 0.920 20 C -0.126 4.126 21 C -0.123 4.123 22 C 0.040 3.960 23 N -0.465 5.465 24 C -0.007 4.007 25 C -0.150 4.150 26 C -0.175 4.175 27 C -0.188 4.188 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.402 0.598 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -21.592 -0.780 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.114 3.886 11 C -0.266 4.266 12 C -0.077 4.077 13 C -0.259 4.259 14 C 0.089 3.911 15 N -0.322 5.322 16 C 0.297 3.703 17 O -0.350 6.350 18 C -0.058 4.058 19 H 0.098 0.902 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.087 4.087 23 N -0.189 5.189 24 C -0.116 4.116 25 C -0.187 4.187 26 C -0.213 4.213 27 C -0.210 4.210 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.618 -20.342 0.037 20.407 hybrid contribution 0.864 -0.115 -0.907 1.258 sum -0.754 -20.458 -0.870 20.490 Atomic orbital electron populations 1.70060 1.05944 1.27571 1.45938 1.25295 0.95829 0.98803 0.96635 0.85719 0.78913 0.80169 0.78638 1.19932 1.20290 1.19202 1.21331 0.91773 0.80856 1.52820 0.89064 1.84011 1.34145 1.11361 1.78190 1.19128 0.90063 0.87727 0.91704 1.21170 0.94275 0.98991 1.12144 1.20496 0.98321 0.91709 0.97213 1.20254 0.93026 0.97468 1.15153 1.17149 0.91411 0.83586 0.98952 1.43430 1.14991 1.11524 1.62247 1.20416 0.81325 0.89495 0.79075 1.90789 1.64548 1.42384 1.37284 1.22320 0.90971 0.93480 0.99048 0.90241 1.22449 0.98909 0.96257 0.98794 1.22493 0.93737 1.00310 0.99563 1.23194 0.98017 0.88490 0.98993 1.64116 0.99037 1.24493 1.31240 1.22594 0.90726 1.04447 0.93807 1.23061 1.01047 0.90319 1.04297 1.23045 0.92944 1.02783 1.02529 1.20008 1.00686 0.88811 1.11472 0.92065 0.85507 0.87124 0.87478 0.76332 0.90319 0.90182 0.90573 0.90333 0.93444 0.89672 0.89341 0.87329 0.88781 0.88895 0.88526 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.32 9.44 30.88 0.29 -11.03 16 8 H 0.09 2.42 5.30 -52.49 -0.28 2.14 16 9 O -0.17 -5.24 9.76 0.03 0.00 -5.24 16 10 C 0.17 4.34 6.64 -39.13 -0.26 4.08 16 11 C -0.25 -5.55 9.13 -39.36 -0.36 -5.91 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.24 -4.16 9.96 -39.34 -0.39 -4.55 16 14 C 0.18 3.49 6.27 -83.72 -0.52 2.96 16 15 N -0.68 -10.02 5.22 -9.88 -0.05 -10.07 16 16 C 0.51 8.23 6.73 -10.98 -0.07 8.16 16 17 O -0.48 -10.24 14.18 5.55 0.08 -10.16 16 18 C 0.05 0.63 2.89 -67.80 -0.20 0.43 16 19 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16 20 C -0.13 -1.06 6.41 -25.38 -0.16 -1.22 16 21 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16 22 C 0.04 0.37 6.03 -1.90 -0.01 0.36 16 23 N -0.46 -5.79 4.58 -216.03 -0.99 -6.78 16 24 C -0.01 -0.08 5.24 -67.71 -0.35 -0.44 16 25 C -0.15 -2.00 10.46 -26.73 -0.28 -2.28 16 26 C -0.18 -1.82 9.90 -26.73 -0.26 -2.08 16 27 C -0.19 -4.44 8.60 -39.21 -0.34 -4.78 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16 30 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.40 4.23 8.71 -40.82 -0.36 3.87 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.72 7.62 -51.93 -0.40 0.33 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.37 8.02 -51.93 -0.42 -0.04 16 38 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 39 H 0.09 0.96 7.64 -51.93 -0.40 0.57 16 40 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 44 H 0.13 3.23 6.45 -52.49 -0.34 2.89 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -35.11 364.56 -9.53 -44.64 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.21 Total: 9.41 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -3.59 Total: -17.96 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.28 Total: -42.19 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.11 -9.53 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279497691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.490 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds