Wall clock time and date at job start Tue Mar 31 2020 10:47:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31560 * 1
3 3 Si 1.86797 * 119.99955 * 2 1
4 4 H 1.48507 * 109.47022 * 269.99936 * 3 2 1
5 5 H 1.48497 * 109.47230 * 29.99786 * 3 2 1
6 6 H 1.48500 * 109.47221 * 150.00286 * 3 2 1
7 7 C 1.38649 * 120.00100 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00605 * 179.97438 * 7 2 1
9 9 O 1.34835 * 119.99762 * 0.02562 * 7 2 1
10 10 C 1.35753 * 116.99936 * 185.41168 * 9 7 2
11 11 C 1.38955 * 120.03299 * 5.91242 * 10 9 7
12 12 C 1.38123 * 120.06895 * 180.02562 * 11 10 9
13 13 C 1.38195 * 120.14230 * 359.97438 * 12 11 10
14 14 C 1.38924 * 120.06563 * 0.02562 * 13 12 11
15 15 N 1.39926 * 120.03281 * 179.97438 * 14 13 12
16 16 C 1.34776 * 119.99514 * 146.40876 * 15 14 13
17 17 O 1.21289 * 120.00401 * 354.79738 * 16 15 14
18 18 C 1.50702 * 120.00013 * 174.80214 * 16 15 14
19 19 H 1.09001 * 110.06299 * 300.24924 * 18 16 15
20 20 C 1.53988 * 109.91714 * 61.45325 * 18 16 15
21 21 C 1.54594 * 105.14295 * 120.58176 * 20 18 16
22 22 C 1.54940 * 102.92141 * 21.95350 * 21 20 18
23 23 N 1.47897 * 109.91815 * 179.04224 * 18 16 15
24 24 C 1.46903 * 111.00205 * 94.80374 * 23 18 16
25 25 C 1.53001 * 117.50116 * 243.62518 * 24 23 18
26 26 C 1.53000 * 117.50211 * 174.99909 * 24 23 18
27 27 C 1.38735 * 120.03379 * 186.16678 * 10 9 7
28 28 H 0.97003 * 119.99984 * 359.97438 * 1 2 3
29 29 H 1.07998 * 119.96228 * 359.97438 * 11 10 9
30 30 H 1.08005 * 119.92494 * 180.02562 * 12 11 10
31 31 H 1.08002 * 119.97061 * 180.02562 * 13 12 11
32 32 H 0.96995 * 120.00753 * 326.40923 * 15 14 13
33 33 H 1.09006 * 110.31143 * 239.49788 * 20 18 16
34 34 H 1.08996 * 110.31023 * 1.56206 * 20 18 16
35 35 H 1.09003 * 110.72965 * 140.31628 * 21 20 18
36 36 H 1.09001 * 110.72311 * 263.59923 * 21 20 18
37 37 H 1.08996 * 110.66253 * 81.02058 * 22 21 20
38 38 H 1.08996 * 110.66801 * 203.98914 * 22 21 20
39 39 H 1.09007 * 115.54650 * 29.32604 * 24 23 18
40 40 H 1.09003 * 117.49416 * 359.97438 * 25 24 23
41 41 H 1.08995 * 117.50430 * 145.01422 * 25 24 23
42 42 H 1.08996 * 117.49919 * 214.97956 * 26 24 23
43 43 H 1.08999 * 117.49574 * 359.97438 * 26 24 23
44 44 H 1.08000 * 120.07070 * 0.04309 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4971 2.0464 -1.4001
5 1 1.4470 2.6527 0.7000
6 1 3.5472 1.4402 0.7000
7 6 2.0089 -1.2007 0.0005
8 1 3.0889 -1.2008 0.0001
9 8 1.3347 -2.3684 0.0005
10 6 2.0693 -3.5042 0.1152
11 6 3.4369 -3.4273 0.3487
12 6 4.1852 -4.5825 0.4649
13 6 3.5767 -5.8179 0.3499
14 6 2.2098 -5.9015 0.1165
15 7 1.5945 -7.1528 -0.0004
16 6 0.3320 -7.3264 0.4381
17 8 -0.2376 -6.4265 1.0187
18 6 -0.3722 -8.6386 0.2073
19 1 -0.4376 -8.8450 -0.8610
20 6 0.3895 -9.7743 0.9153
21 6 -0.6255 -10.3824 1.9101
22 6 -1.9915 -9.9604 1.3129
23 7 -1.7283 -8.5931 0.7957
24 6 -2.7267 -8.2102 -0.2116
25 6 -3.4791 -6.8955 0.0036
26 6 -4.1978 -8.2306 0.2083
27 6 1.4563 -4.7429 -0.0060
28 1 -0.4850 0.8401 0.0004
29 1 3.9154 -2.4633 0.4386
30 1 5.2480 -4.5200 0.6469
31 1 4.1644 -6.7194 0.4417
32 1 2.0765 -7.8952 -0.3969
33 1 0.7067 -10.5256 0.1919
34 1 1.2524 -9.3759 1.4489
35 1 -0.5356 -11.4684 1.9377
36 1 -0.4920 -9.9580 2.9052
37 1 -2.2800 -10.6294 0.5022
38 1 -2.7598 -9.9408 2.0857
39 1 -2.4921 -8.4940 -1.2376
40 1 -3.2336 -6.3149 0.8929
41 1 -3.7396 -6.3140 -0.8807
42 1 -4.9311 -8.5276 -0.5414
43 1 -4.4248 -8.5287 1.2319
44 1 0.3943 -4.8052 -0.1923
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279497691.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:54
Heat of formation + Delta-G solvation = 9.847866 kcal
Electronic energy + Delta-G solvation = -26149.357979 eV
Core-core repulsion = 22454.750862 eV
Total energy + Delta-G solvation = -3694.607117 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.50126 -39.13749 -38.14500 -36.39403 -35.97500 -33.96167 -32.19995 -30.45054
-30.25223 -29.19048 -27.99779 -25.25548 -23.67695 -22.51861 -22.14856 -21.50546
-21.20501 -20.54799 -19.76230 -18.20318 -17.52208 -16.86381 -16.63584 -15.75091
-15.28311 -15.02098 -14.82391 -14.65924 -14.21796 -14.12153 -13.68866 -13.56515
-13.46979 -13.31509 -12.87180 -12.70365 -12.44094 -12.11378 -11.76055 -11.68613
-11.60413 -11.40330 -11.30527 -11.13770 -11.03607 -10.92247 -10.71839 -10.44150
-10.42718 -10.20706 -9.70335 -9.57503 -9.15922 -8.76760 -8.48622 -7.61214
-7.12635 -6.37576 -3.96846 2.07855 2.39664 2.98189 3.09503 3.17297
3.18891 3.23026 3.72417 3.80247 4.02641 4.31250 4.42460 4.59762
4.65588 4.88410 4.91033 4.97052 4.99413 5.16163 5.17841 5.24491
5.34948 5.43183 5.47557 5.53652 5.60154 5.64956 5.66993 5.76890
5.87841 5.88813 6.07382 6.16175 6.28436 6.33488 6.42630 6.56467
6.77560 6.91328 6.99031 7.09050 7.13603 7.39056 7.52691 7.80836
7.86367 8.07100 8.52821 9.07249 9.79284 10.80367
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.016102 B = 0.003330 C = 0.002822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1738.541807 B = 8407.375406 C = 9918.291080
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.860 5.860
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.274 1.274
5 H -0.278 1.278
6 H -0.268 1.268
7 C -0.391 4.391
8 H 0.092 0.908
9 O -0.174 6.174
10 C 0.168 3.832
11 C -0.246 4.246
12 C -0.059 4.059
13 C -0.238 4.238
14 C 0.182 3.818
15 N -0.675 5.675
16 C 0.512 3.488
17 O -0.480 6.480
18 C 0.054 3.946
19 H 0.080 0.920
20 C -0.126 4.126
21 C -0.123 4.123
22 C 0.040 3.960
23 N -0.465 5.465
24 C -0.007 4.007
25 C -0.150 4.150
26 C -0.175 4.175
27 C -0.188 4.188
28 H 0.269 0.731
29 H 0.127 0.873
30 H 0.111 0.889
31 H 0.107 0.893
32 H 0.402 0.598
33 H 0.078 0.922
34 H 0.079 0.921
35 H 0.076 0.924
36 H 0.078 0.922
37 H 0.047 0.953
38 H 0.085 0.915
39 H 0.089 0.911
40 H 0.108 0.892
41 H 0.094 0.906
42 H 0.093 0.907
43 H 0.096 0.904
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.640 -21.592 -0.780 21.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.495 5.495
2 C -0.166 4.166
3 Si 0.766 3.234
4 H -0.199 1.199
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.077 6.077
10 C 0.114 3.886
11 C -0.266 4.266
12 C -0.077 4.077
13 C -0.259 4.259
14 C 0.089 3.911
15 N -0.322 5.322
16 C 0.297 3.703
17 O -0.350 6.350
18 C -0.058 4.058
19 H 0.098 0.902
20 C -0.164 4.164
21 C -0.161 4.161
22 C -0.087 4.087
23 N -0.189 5.189
24 C -0.116 4.116
25 C -0.187 4.187
26 C -0.213 4.213
27 C -0.210 4.210
28 H 0.079 0.921
29 H 0.145 0.855
30 H 0.129 0.871
31 H 0.125 0.875
32 H 0.237 0.763
33 H 0.097 0.903
34 H 0.098 0.902
35 H 0.094 0.906
36 H 0.097 0.903
37 H 0.066 0.934
38 H 0.103 0.897
39 H 0.107 0.893
40 H 0.127 0.873
41 H 0.112 0.888
42 H 0.111 0.889
43 H 0.115 0.885
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -1.618 -20.342 0.037 20.407
hybrid contribution 0.864 -0.115 -0.907 1.258
sum -0.754 -20.458 -0.870 20.490
Atomic orbital electron populations
1.70060 1.05944 1.27571 1.45938 1.25295 0.95829 0.98803 0.96635
0.85719 0.78913 0.80169 0.78638 1.19932 1.20290 1.19202 1.21331
0.91773 0.80856 1.52820 0.89064 1.84011 1.34145 1.11361 1.78190
1.19128 0.90063 0.87727 0.91704 1.21170 0.94275 0.98991 1.12144
1.20496 0.98321 0.91709 0.97213 1.20254 0.93026 0.97468 1.15153
1.17149 0.91411 0.83586 0.98952 1.43430 1.14991 1.11524 1.62247
1.20416 0.81325 0.89495 0.79075 1.90789 1.64548 1.42384 1.37284
1.22320 0.90971 0.93480 0.99048 0.90241 1.22449 0.98909 0.96257
0.98794 1.22493 0.93737 1.00310 0.99563 1.23194 0.98017 0.88490
0.98993 1.64116 0.99037 1.24493 1.31240 1.22594 0.90726 1.04447
0.93807 1.23061 1.01047 0.90319 1.04297 1.23045 0.92944 1.02783
1.02529 1.20008 1.00686 0.88811 1.11472 0.92065 0.85507 0.87124
0.87478 0.76332 0.90319 0.90182 0.90573 0.90333 0.93444 0.89672
0.89341 0.87329 0.88781 0.88895 0.88526 0.85433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16
2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16
3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16
4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16
7 C -0.39 -11.32 9.44 30.88 0.29 -11.03 16
8 H 0.09 2.42 5.30 -52.49 -0.28 2.14 16
9 O -0.17 -5.24 9.76 0.03 0.00 -5.24 16
10 C 0.17 4.34 6.64 -39.13 -0.26 4.08 16
11 C -0.25 -5.55 9.13 -39.36 -0.36 -5.91 16
12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16
13 C -0.24 -4.16 9.96 -39.34 -0.39 -4.55 16
14 C 0.18 3.49 6.27 -83.72 -0.52 2.96 16
15 N -0.68 -10.02 5.22 -9.88 -0.05 -10.07 16
16 C 0.51 8.23 6.73 -10.98 -0.07 8.16 16
17 O -0.48 -10.24 14.18 5.55 0.08 -10.16 16
18 C 0.05 0.63 2.89 -67.80 -0.20 0.43 16
19 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16
20 C -0.13 -1.06 6.41 -25.38 -0.16 -1.22 16
21 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16
22 C 0.04 0.37 6.03 -1.90 -0.01 0.36 16
23 N -0.46 -5.79 4.58 -216.03 -0.99 -6.78 16
24 C -0.01 -0.08 5.24 -67.71 -0.35 -0.44 16
25 C -0.15 -2.00 10.46 -26.73 -0.28 -2.28 16
26 C -0.18 -1.82 9.90 -26.73 -0.26 -2.08 16
27 C -0.19 -4.44 8.60 -39.21 -0.34 -4.78 16
28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
29 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16
30 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16
31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
32 H 0.40 4.23 8.71 -40.82 -0.36 3.87 16
33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.08 0.72 7.62 -51.93 -0.40 0.33 16
35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
37 H 0.05 0.37 8.02 -51.93 -0.42 -0.04 16
38 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16
39 H 0.09 0.96 7.64 -51.93 -0.40 0.57 16
40 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16
41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16
42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16
43 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16
44 H 0.13 3.23 6.45 -52.49 -0.34 2.89 16
LS Contribution 364.56 15.07 5.49 5.49
Total: -1.00 -35.11 364.56 -9.53 -44.64
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: -6.21 Total: 9.41 kcal
Atomic # 6 Polarization: -14.37 SS G_CDS: -3.59 Total: -17.96 kcal
Atomic # 7 Polarization: -41.91 SS G_CDS: -0.28 Total: -42.19 kcal
Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -35.11 -9.53 -44.64 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279497691.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.490 kcal
(2) G-P(sol) polarization free energy of solvation -35.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds