Wall clock time and date at job start Tue Mar 31 2020 10:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48507 * 109.47022 * 269.99936 * 3 2 1 5 5 H 1.48497 * 109.47230 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47221 * 150.00286 * 3 2 1 7 7 C 1.38649 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00605 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99936 * 185.41168 * 9 7 2 11 11 C 1.38955 * 120.03299 * 5.91242 * 10 9 7 12 12 C 1.38123 * 120.06895 * 180.02562 * 11 10 9 13 13 C 1.38195 * 120.14230 * 359.97438 * 12 11 10 14 14 C 1.38924 * 120.06563 * 0.02562 * 13 12 11 15 15 N 1.39926 * 120.03281 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99514 * 146.40876 * 15 14 13 17 17 O 1.21289 * 120.00401 * 354.79738 * 16 15 14 18 18 C 1.50702 * 120.00013 * 174.80214 * 16 15 14 19 19 H 1.09001 * 110.06299 * 300.24924 * 18 16 15 20 20 C 1.53988 * 109.91714 * 61.45325 * 18 16 15 21 21 C 1.54594 * 105.14295 * 120.58176 * 20 18 16 22 22 C 1.54940 * 102.92141 * 21.95350 * 21 20 18 23 23 N 1.47897 * 109.91815 * 179.04224 * 18 16 15 24 24 C 1.46903 * 111.00205 * 94.80374 * 23 18 16 25 25 C 1.53001 * 117.50116 * 243.62518 * 24 23 18 26 26 C 1.53000 * 117.50211 * 174.99909 * 24 23 18 27 27 C 1.38735 * 120.03379 * 186.16678 * 10 9 7 28 28 H 0.97003 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.96228 * 359.97438 * 11 10 9 30 30 H 1.08005 * 119.92494 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.97061 * 180.02562 * 13 12 11 32 32 H 0.96995 * 120.00753 * 326.40923 * 15 14 13 33 33 H 1.09006 * 110.31143 * 239.49788 * 20 18 16 34 34 H 1.08996 * 110.31023 * 1.56206 * 20 18 16 35 35 H 1.09003 * 110.72965 * 140.31628 * 21 20 18 36 36 H 1.09001 * 110.72311 * 263.59923 * 21 20 18 37 37 H 1.08996 * 110.66253 * 81.02058 * 22 21 20 38 38 H 1.08996 * 110.66801 * 203.98914 * 22 21 20 39 39 H 1.09007 * 115.54650 * 29.32604 * 24 23 18 40 40 H 1.09003 * 117.49416 * 359.97438 * 25 24 23 41 41 H 1.08995 * 117.50430 * 145.01422 * 25 24 23 42 42 H 1.08996 * 117.49919 * 214.97956 * 26 24 23 43 43 H 1.08999 * 117.49574 * 359.97438 * 26 24 23 44 44 H 1.08000 * 120.07070 * 0.04309 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0693 -3.5042 0.1152 11 6 3.4369 -3.4273 0.3487 12 6 4.1852 -4.5825 0.4649 13 6 3.5767 -5.8179 0.3499 14 6 2.2098 -5.9015 0.1165 15 7 1.5945 -7.1528 -0.0004 16 6 0.3320 -7.3264 0.4381 17 8 -0.2376 -6.4265 1.0187 18 6 -0.3722 -8.6386 0.2073 19 1 -0.4376 -8.8450 -0.8610 20 6 0.3895 -9.7743 0.9153 21 6 -0.6255 -10.3824 1.9101 22 6 -1.9915 -9.9604 1.3129 23 7 -1.7283 -8.5931 0.7957 24 6 -2.7267 -8.2102 -0.2116 25 6 -3.4791 -6.8955 0.0036 26 6 -4.1978 -8.2306 0.2083 27 6 1.4563 -4.7429 -0.0060 28 1 -0.4850 0.8401 0.0004 29 1 3.9154 -2.4633 0.4386 30 1 5.2480 -4.5200 0.6469 31 1 4.1644 -6.7194 0.4417 32 1 2.0765 -7.8952 -0.3969 33 1 0.7067 -10.5256 0.1919 34 1 1.2524 -9.3759 1.4489 35 1 -0.5356 -11.4684 1.9377 36 1 -0.4920 -9.9580 2.9052 37 1 -2.2800 -10.6294 0.5022 38 1 -2.7598 -9.9408 2.0857 39 1 -2.4921 -8.4940 -1.2376 40 1 -3.2336 -6.3149 0.8929 41 1 -3.7396 -6.3140 -0.8807 42 1 -4.9311 -8.5276 -0.5414 43 1 -4.4248 -8.5287 1.2319 44 1 0.3943 -4.8052 -0.1923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279497691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:53 Heat of formation + Delta-G solvation = -15.655969 kcal Electronic energy + Delta-G solvation = -26150.463909 eV Core-core repulsion = 22454.750862 eV Total energy + Delta-G solvation = -3695.713046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75076 -40.63200 -39.55603 -38.06167 -36.91292 -35.48055 -34.26825 -31.55287 -31.24276 -30.77052 -29.37554 -27.33442 -24.83250 -23.58748 -23.37672 -23.01818 -22.34452 -21.45574 -20.96525 -19.95422 -19.18871 -18.30465 -17.61300 -17.11589 -16.76605 -16.54193 -16.23835 -15.94397 -15.70442 -15.53908 -15.44055 -14.81333 -14.64691 -14.38281 -14.27022 -14.07465 -13.63337 -13.58493 -13.21718 -12.97969 -12.88192 -12.65420 -12.49609 -12.45057 -12.34676 -12.13478 -12.10659 -11.75353 -11.38666 -11.36629 -11.24494 -11.11688 -10.77733 -10.66296 -9.37225 -9.32221 -8.85632 -8.47239 -6.17269 0.43181 0.70412 1.33344 1.43871 1.52638 1.69761 1.92469 2.18279 2.78785 2.82941 2.86850 3.17184 3.40853 3.55603 3.66911 3.86566 3.97727 4.03684 4.10362 4.13549 4.20150 4.32328 4.36763 4.42444 4.56657 4.59372 4.71626 4.73164 4.73708 4.80285 4.87440 4.99306 5.02427 5.06035 5.11433 5.13104 5.25223 5.25693 5.41101 5.48469 5.63027 5.74164 5.81801 6.02206 6.06215 6.22147 6.56615 6.96151 7.29072 7.79329 8.76771 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003330 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.541807 B = 8407.375406 C = 9918.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.028 4.028 3 Si 1.024 2.976 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.414 4.414 8 H 0.106 0.894 9 O -0.237 6.237 10 C 0.127 3.873 11 C -0.257 4.257 12 C -0.048 4.048 13 C -0.206 4.206 14 C 0.190 3.810 15 N -0.658 5.658 16 C 0.505 3.495 17 O -0.544 6.544 18 C 0.060 3.940 19 H 0.104 0.896 20 C -0.118 4.118 21 C -0.120 4.120 22 C 0.041 3.959 23 N -0.501 5.501 24 C -0.004 4.004 25 C -0.188 4.188 26 C -0.143 4.143 27 C -0.215 4.215 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.429 0.571 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -25.694 -1.226 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.843 3.157 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.490 4.490 8 H 0.123 0.877 9 O -0.144 6.144 10 C 0.076 3.924 11 C -0.277 4.277 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.095 3.905 15 N -0.306 5.306 16 C 0.293 3.707 17 O -0.418 6.418 18 C -0.053 4.053 19 H 0.121 0.879 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.085 4.085 23 N -0.226 5.226 24 C -0.113 4.113 25 C -0.226 4.226 26 C -0.180 4.180 27 C -0.237 4.237 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.268 0.732 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.703 -24.562 -0.424 24.625 hybrid contribution -0.083 0.822 -0.729 1.102 sum 1.620 -23.740 -1.152 23.823 Atomic orbital electron populations 1.70237 1.08325 1.28778 1.48980 1.26737 0.96872 1.03071 0.95790 0.84519 0.77799 0.74031 0.79368 1.18549 1.19741 1.17210 1.21909 0.92662 0.81285 1.53169 0.87650 1.83973 1.36210 1.12787 1.81386 1.19677 0.91805 0.87269 0.93650 1.21315 0.92991 1.00730 1.12631 1.21051 1.00395 0.90427 0.94754 1.20901 0.92061 0.99292 1.10381 1.17322 0.92235 0.83867 0.97092 1.43352 1.14988 1.10638 1.61671 1.21531 0.81148 0.90611 0.77414 1.90792 1.65892 1.44901 1.40177 1.22391 0.90606 0.91438 1.00832 0.87858 1.22521 0.98136 0.95593 0.99394 1.22516 0.92813 1.02109 0.98348 1.23268 0.98796 0.86915 0.99515 1.63955 0.99545 1.27092 1.31970 1.22701 0.91643 1.02245 0.94685 1.22924 1.05288 0.91743 1.02638 1.23086 0.92693 0.98842 1.03412 1.20020 0.99593 0.90341 1.13718 0.91910 0.85964 0.82192 0.81711 0.73155 0.86310 0.90675 0.87352 0.92258 0.91208 0.90043 0.87771 0.91578 0.89111 0.86205 0.88315 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.44 13.67 21.61 0.30 -60.15 16 2 C -0.03 -1.67 5.49 84.83 0.47 -1.21 16 3 Si 1.02 44.76 29.55 68.60 2.03 46.79 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.41 -25.57 9.44 67.92 0.64 -24.93 16 8 H 0.11 5.87 5.30 -2.91 -0.02 5.85 16 9 O -0.24 -15.62 9.76 -22.82 -0.22 -15.84 16 10 C 0.13 6.98 6.64 22.56 0.15 7.13 16 11 C -0.26 -11.67 9.13 22.41 0.20 -11.47 16 12 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 13 C -0.21 -6.27 9.96 22.42 0.22 -6.05 16 14 C 0.19 7.04 6.27 38.14 0.24 7.28 16 15 N -0.66 -18.19 5.22 -303.55 -1.58 -19.77 16 16 C 0.51 16.22 6.73 87.66 0.59 16.81 16 17 O -0.54 -24.86 14.18 -3.06 -0.04 -24.90 16 18 C 0.06 1.25 2.89 44.31 0.13 1.38 16 19 H 0.10 1.71 7.46 -2.39 -0.02 1.69 16 20 C -0.12 -1.51 6.41 31.47 0.20 -1.30 16 21 C -0.12 -1.53 7.06 31.80 0.22 -1.31 16 22 C 0.04 0.65 6.03 86.65 0.52 1.17 16 23 N -0.50 -12.14 4.58 -837.40 -3.83 -15.97 16 24 C 0.00 -0.09 5.24 44.92 0.24 0.14 16 25 C -0.19 -5.55 10.46 30.60 0.32 -5.23 16 26 C -0.14 -2.89 9.90 30.60 0.30 -2.59 16 27 C -0.21 -10.80 8.60 22.51 0.19 -10.60 16 28 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 29 H 0.12 5.56 5.71 -2.91 -0.02 5.55 16 30 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.43 7.13 8.71 -92.71 -0.81 6.33 16 33 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.07 1.06 7.62 -2.39 -0.02 1.04 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.81 8.02 -2.39 -0.02 0.79 16 38 H 0.08 1.32 7.95 -2.39 -0.02 1.30 16 39 H 0.10 2.10 7.64 -2.38 -0.02 2.08 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.95 7.88 -2.39 -0.02 1.94 16 44 H 0.09 5.17 6.45 -2.91 -0.02 5.16 16 Total: -1.00 -90.32 364.56 1.72 -88.60 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.22 Total: 33.41 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.86 Total: -32.16 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -5.12 Total: -95.90 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.27 Total: -40.74 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -90.32 1.72 -88.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279497691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.941 kcal (2) G-P(sol) polarization free energy of solvation -90.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds