Wall clock time and date at job start Tue Mar 31 2020 12:21:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50698 * 120.00010 * 2 1
4 4 N 1.46499 * 109.46932 * 125.00047 * 3 2 1
5 5 C 1.46504 * 120.00386 * 274.82830 * 4 3 2
6 6 C 1.50690 * 109.47446 * 263.67045 * 5 4 3
7 7 H 1.08007 * 120.00055 * 0.02562 * 6 5 4
8 8 C 1.37880 * 120.00202 * 179.97438 * 6 5 4
9 9 N 1.31515 * 120.00040 * 180.02562 * 8 6 5
10 10 Si 1.86795 * 119.99776 * 0.02562 * 8 6 5
11 11 H 1.48505 * 109.46881 * 89.99979 * 10 8 6
12 12 H 1.48498 * 109.47334 * 209.99945 * 10 8 6
13 13 H 1.48503 * 109.47282 * 330.00192 * 10 8 6
14 14 C 1.34778 * 119.99803 * 94.83352 * 4 3 2
15 15 O 1.21357 * 120.00336 * 354.62369 * 14 4 3
16 16 C 1.49355 * 120.00029 * 174.61983 * 14 4 3
17 17 O 1.21376 * 120.00137 * 0.24247 * 16 14 4
18 18 N 1.34777 * 120.00231 * 180.23775 * 16 14 4
19 19 C 1.39721 * 120.00217 * 184.85476 * 18 16 14
20 20 C 1.38948 * 120.07728 * 326.25153 * 19 18 16
21 21 C 1.38071 * 119.92658 * 180.02562 * 20 19 18
22 22 C 1.38319 * 120.07336 * 0.24448 * 21 20 19
23 23 C 1.38268 * 120.15171 * 359.49654 * 22 21 20
24 24 C 1.50700 * 119.96168 * 180.27568 * 23 22 21
25 25 C 1.38110 * 120.07650 * 0.51065 * 23 22 21
26 26 C 1.50709 * 120.04021 * 179.76939 * 25 23 22
27 27 H 1.07990 * 120.00163 * 359.97438 * 1 2 3
28 28 H 1.08006 * 119.99888 * 180.02562 * 1 2 3
29 29 H 1.08003 * 120.00045 * 180.02562 * 2 1 3
30 30 H 1.08997 * 109.47046 * 5.00598 * 3 2 1
31 31 H 1.08995 * 109.47285 * 245.00156 * 3 2 1
32 32 H 1.08998 * 109.46466 * 23.67860 * 5 4 3
33 33 H 1.09007 * 109.46969 * 143.66833 * 5 4 3
34 34 H 0.96998 * 119.99592 * 180.02562 * 9 8 6
35 35 H 0.97001 * 119.99815 * 4.85544 * 18 16 14
36 36 H 1.08004 * 120.03556 * 359.97438 * 20 19 18
37 37 H 1.08003 * 119.96527 * 179.97438 * 21 20 19
38 38 H 1.07999 * 119.92122 * 179.72971 * 22 21 20
39 39 H 1.09000 * 109.47121 * 270.23242 * 24 23 22
40 40 H 1.08998 * 109.47498 * 30.22769 * 24 23 22
41 41 H 1.08999 * 109.47647 * 150.23440 * 24 23 22
42 42 H 1.08996 * 109.46609 * 269.97286 * 26 25 23
43 43 H 1.09003 * 109.47027 * 29.97194 * 26 25 23
44 44 H 1.08995 * 109.47278 * 149.97430 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3318 1.1314
5 6 2.5294 1.7656 2.4515
6 6 2.8598 3.2229 2.6464
7 1 3.3647 3.7714 1.8649
8 6 2.5165 3.8564 3.8219
9 7 2.8043 5.1284 3.9918
10 14 1.6426 2.9080 5.1732
11 1 2.6482 2.3030 6.0832
12 1 0.7713 3.8321 5.9427
13 1 0.8135 1.8347 4.5682
14 6 4.2768 0.9575 0.9579
15 8 4.6383 0.5062 -0.1091
16 6 5.2539 1.0981 2.0787
17 8 4.8915 1.5454 3.1472
18 7 6.5380 0.7282 1.9036
19 6 7.4283 0.7640 2.9799
20 6 7.3004 1.7434 3.9572
21 6 8.1822 1.7762 5.0191
22 6 9.1952 0.8386 5.1081
23 6 9.3221 -0.1407 4.1402
24 6 10.4236 -1.1638 4.2447
25 6 8.4437 -0.1792 3.0752
26 6 8.5860 -1.2438 2.0180
27 1 -0.5400 0.9352 0.0004
28 1 -0.5400 -0.9354 0.0004
29 1 1.8500 -0.9353 -0.0004
30 1 1.3586 2.1316 0.0897
31 1 2.6212 1.4026 -0.9313
32 1 1.4509 1.6249 2.5215
33 1 3.0237 1.1747 3.2227
34 1 2.5631 5.5739 4.8189
35 1 6.8442 0.4371 1.0305
36 1 6.5125 2.4787 3.8858
37 1 8.0835 2.5374 5.7789
38 1 9.8862 0.8692 5.9375
39 1 11.3125 -0.7943 3.7334
40 1 10.6561 -1.3416 5.2947
41 1 10.0992 -2.0957 3.7816
42 1 9.2433 -0.8840 1.2264
43 1 9.0117 -2.1432 2.4630
44 1 7.6061 -1.4740 1.5999
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000293080572.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:21:26
Heat of formation + Delta-G solvation = -3.855807 kcal
Electronic energy + Delta-G solvation = -26726.835072 eV
Core-core repulsion = 23031.633719 eV
Total energy + Delta-G solvation = -3695.201353 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.72492 -39.40856 -37.84100 -36.06545 -34.66986 -33.34065 -33.21425 -32.13790
-30.67289 -28.19516 -27.55544 -26.48801 -26.24030 -23.90981 -22.47160 -21.06941
-20.96711 -19.83565 -19.09531 -17.42761 -17.04248 -16.68796 -16.06499 -15.63130
-15.50871 -15.43810 -14.78124 -14.56662 -14.25044 -14.05765 -13.68087 -13.46710
-13.19688 -12.92914 -12.88346 -12.75276 -12.53077 -12.35860 -12.13931 -11.90264
-11.75794 -11.63322 -11.34683 -11.20576 -10.99790 -10.88977 -10.65053 -10.47308
-10.21116 -9.98724 -9.56707 -9.30787 -8.74014 -8.51848 -8.36652 -8.03747
-7.81501 -6.07678 -4.04922 1.37080 1.55252 2.09876 2.32000 2.94047
3.31162 3.35922 3.39458 3.70368 3.99565 4.06001 4.41886 4.82202
4.85885 4.94771 5.07711 5.16753 5.17383 5.26689 5.36082 5.42970
5.46217 5.60000 5.63066 5.72246 5.78097 5.81175 5.88871 5.99221
6.00572 6.14098 6.27903 6.36858 6.47328 6.64194 6.70341 6.75298
6.78302 6.84381 6.91215 7.12718 7.28612 7.48693 7.55994 7.84153
8.20578 8.45024 8.57178 8.92130 9.52831 11.05530
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.011873 B = 0.004859 C = 0.003727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2357.790266 B = 5760.824605 C = 7511.516717
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.161 4.161
3 C 0.139 3.861
4 N -0.551 5.551
5 C 0.200 3.800
6 C -0.515 4.515
7 H 0.072 0.928
8 C 0.082 3.918
9 N -0.897 5.897
10 Si 0.872 3.128
11 H -0.272 1.272
12 H -0.287 1.287
13 H -0.267 1.267
14 C 0.511 3.489
15 O -0.554 6.554
16 C 0.492 3.508
17 O -0.436 6.436
18 N -0.658 5.658
19 C 0.156 3.844
20 C -0.122 4.122
21 C -0.102 4.102
22 C -0.138 4.138
23 C -0.077 4.077
24 C -0.112 4.112
25 C -0.117 4.117
26 C -0.117 4.117
27 H 0.100 0.900
28 H 0.095 0.905
29 H 0.107 0.893
30 H 0.091 0.909
31 H 0.089 0.911
32 H 0.031 0.969
33 H 0.056 0.944
34 H 0.264 0.736
35 H 0.415 0.585
36 H 0.150 0.850
37 H 0.124 0.876
38 H 0.118 0.882
39 H 0.068 0.932
40 H 0.063 0.937
41 H 0.068 0.932
42 H 0.069 0.931
43 H 0.072 0.928
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.044 -12.246 -2.613 15.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.180 4.180
3 C 0.017 3.983
4 N -0.281 5.281
5 C 0.080 3.920
6 C -0.553 4.553
7 H 0.090 0.910
8 C -0.121 4.121
9 N -0.535 5.535
10 Si 0.699 3.301
11 H -0.198 1.198
12 H -0.213 1.213
13 H -0.192 1.192
14 C 0.294 3.706
15 O -0.435 6.435
16 C 0.273 3.727
17 O -0.304 6.304
18 N -0.306 5.306
19 C 0.062 3.938
20 C -0.142 4.142
21 C -0.120 4.120
22 C -0.157 4.157
23 C -0.078 4.078
24 C -0.169 4.169
25 C -0.120 4.120
26 C -0.173 4.173
27 H 0.118 0.882
28 H 0.114 0.886
29 H 0.125 0.875
30 H 0.109 0.891
31 H 0.108 0.892
32 H 0.049 0.951
33 H 0.074 0.926
34 H 0.074 0.926
35 H 0.252 0.748
36 H 0.168 0.832
37 H 0.142 0.858
38 H 0.136 0.864
39 H 0.086 0.914
40 H 0.082 0.918
41 H 0.087 0.913
42 H 0.088 0.912
43 H 0.090 0.910
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.813 -11.971 -2.263 15.036
hybrid contribution -0.394 -0.338 0.504 0.724
sum 8.419 -12.309 -1.759 15.016
Atomic orbital electron populations
1.23831 0.95732 1.01851 1.00980 1.23321 0.96133 0.99031 0.99484
1.20639 0.92234 0.95395 0.90010 1.47905 1.07362 1.60197 1.12600
1.20314 0.95403 0.97596 0.78711 1.21068 1.39080 0.92196 1.02955
0.90971 1.24701 0.95236 0.94559 0.97602 1.69887 1.47328 1.09943
1.26387 0.86915 0.80055 0.80115 0.82975 1.19780 1.21328 1.19193
1.19779 0.83711 0.79607 0.87545 1.90661 1.78789 1.46502 1.27556
1.20316 0.82808 0.79918 0.89627 1.90916 1.76730 1.36607 1.26129
1.43167 1.08568 1.66498 1.12380 1.17563 0.91170 0.94954 0.90149
1.21563 1.00301 0.98001 0.94290 1.21052 0.94380 0.98747 0.97866
1.20946 0.99289 0.96153 0.99277 1.19449 0.96776 0.97217 0.94311
1.20808 0.96420 0.97369 1.02289 1.19456 0.97539 0.96903 0.98067
1.20787 1.02535 0.96976 0.97020 0.88217 0.88627 0.87542 0.89116
0.89241 0.95099 0.92628 0.92648 0.74753 0.83206 0.85784 0.86385
0.91356 0.91773 0.91340 0.91237 0.90973 0.91636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.43 14.32 29.01 0.42 -2.01 16
2 C -0.16 -2.41 9.84 -36.03 -0.35 -2.77 16
3 C 0.14 2.41 5.83 -5.20 -0.03 2.38 16
4 N -0.55 -11.35 2.46 -176.99 -0.44 -11.79 16
5 C 0.20 4.66 3.85 -5.20 -0.02 4.64 16
6 C -0.51 -14.05 8.34 -34.44 -0.29 -14.34 16
7 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16
8 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16
9 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16
10 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16
11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16
14 C 0.51 10.38 7.67 -11.63 -0.09 10.29 16
15 O -0.55 -11.09 16.04 5.49 0.09 -11.01 16
16 C 0.49 9.91 7.58 -11.63 -0.09 9.83 16
17 O -0.44 -10.09 9.46 5.47 0.05 -10.04 16
18 N -0.66 -11.02 4.76 -10.30 -0.05 -11.07 16
19 C 0.16 2.57 6.30 -83.75 -0.53 2.04 16
20 C -0.12 -2.16 8.71 -39.38 -0.34 -2.51 16
21 C -0.10 -1.54 10.04 -39.61 -0.40 -1.93 16
22 C -0.14 -1.78 9.70 -39.54 -0.38 -2.17 16
23 C -0.08 -0.96 5.88 -104.66 -0.62 -1.57 16
24 C -0.11 -1.00 9.60 36.01 0.35 -0.66 16
25 C -0.12 -1.59 5.90 -104.41 -0.62 -2.21 16
26 C -0.12 -1.23 9.06 36.01 0.33 -0.91 16
27 H 0.10 1.25 7.84 -52.49 -0.41 0.83 16
28 H 0.10 1.07 8.06 -52.48 -0.42 0.64 16
29 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16
30 H 0.09 1.54 7.76 -51.93 -0.40 1.13 16
31 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16
32 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16
33 H 0.06 1.35 5.27 -51.92 -0.27 1.08 16
34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
35 H 0.42 6.06 7.28 -40.82 -0.30 5.76 16
36 H 0.15 3.15 6.11 -52.48 -0.32 2.83 16
37 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16
38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16
39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
40 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16
41 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16
42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16
44 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16
LS Contribution 363.70 15.07 5.48 5.48
Total: -1.00 -31.61 363.70 -7.51 -39.12
By element:
Atomic # 1 Polarization: 14.47 SS G_CDS: -5.99 Total: 8.47 kcal
Atomic # 6 Polarization: 3.08 SS G_CDS: -2.76 Total: 0.32 kcal
Atomic # 7 Polarization: -49.34 SS G_CDS: 0.29 Total: -49.05 kcal
Atomic # 8 Polarization: -21.18 SS G_CDS: 0.14 Total: -21.04 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -31.61 -7.51 -39.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000293080572.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.262 kcal
(2) G-P(sol) polarization free energy of solvation -31.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds