Wall clock time and date at job start Tue Mar 31 2020 12:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00010 * 2 1 4 4 N 1.46499 * 109.46932 * 125.00047 * 3 2 1 5 5 C 1.46504 * 120.00386 * 274.82830 * 4 3 2 6 6 C 1.50690 * 109.47446 * 263.67045 * 5 4 3 7 7 H 1.08007 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00040 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99776 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46881 * 89.99979 * 10 8 6 12 12 H 1.48498 * 109.47334 * 209.99945 * 10 8 6 13 13 H 1.48503 * 109.47282 * 330.00192 * 10 8 6 14 14 C 1.34778 * 119.99803 * 94.83352 * 4 3 2 15 15 O 1.21357 * 120.00336 * 354.62369 * 14 4 3 16 16 C 1.49355 * 120.00029 * 174.61983 * 14 4 3 17 17 O 1.21376 * 120.00137 * 0.24247 * 16 14 4 18 18 N 1.34777 * 120.00231 * 180.23775 * 16 14 4 19 19 C 1.39721 * 120.00217 * 184.85476 * 18 16 14 20 20 C 1.38948 * 120.07728 * 326.25153 * 19 18 16 21 21 C 1.38071 * 119.92658 * 180.02562 * 20 19 18 22 22 C 1.38319 * 120.07336 * 0.24448 * 21 20 19 23 23 C 1.38268 * 120.15171 * 359.49654 * 22 21 20 24 24 C 1.50700 * 119.96168 * 180.27568 * 23 22 21 25 25 C 1.38110 * 120.07650 * 0.51065 * 23 22 21 26 26 C 1.50709 * 120.04021 * 179.76939 * 25 23 22 27 27 H 1.07990 * 120.00163 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99888 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00045 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47046 * 5.00598 * 3 2 1 31 31 H 1.08995 * 109.47285 * 245.00156 * 3 2 1 32 32 H 1.08998 * 109.46466 * 23.67860 * 5 4 3 33 33 H 1.09007 * 109.46969 * 143.66833 * 5 4 3 34 34 H 0.96998 * 119.99592 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99815 * 4.85544 * 18 16 14 36 36 H 1.08004 * 120.03556 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.96527 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.92122 * 179.72971 * 22 21 20 39 39 H 1.09000 * 109.47121 * 270.23242 * 24 23 22 40 40 H 1.08998 * 109.47498 * 30.22769 * 24 23 22 41 41 H 1.08999 * 109.47647 * 150.23440 * 24 23 22 42 42 H 1.08996 * 109.46609 * 269.97286 * 26 25 23 43 43 H 1.09003 * 109.47027 * 29.97194 * 26 25 23 44 44 H 1.08995 * 109.47278 * 149.97430 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5294 1.7656 2.4515 6 6 2.8598 3.2229 2.6464 7 1 3.3647 3.7714 1.8649 8 6 2.5165 3.8564 3.8219 9 7 2.8043 5.1284 3.9918 10 14 1.6426 2.9080 5.1732 11 1 2.6482 2.3030 6.0832 12 1 0.7713 3.8321 5.9427 13 1 0.8135 1.8347 4.5682 14 6 4.2768 0.9575 0.9579 15 8 4.6383 0.5062 -0.1091 16 6 5.2539 1.0981 2.0787 17 8 4.8915 1.5454 3.1472 18 7 6.5380 0.7282 1.9036 19 6 7.4283 0.7640 2.9799 20 6 7.3004 1.7434 3.9572 21 6 8.1822 1.7762 5.0191 22 6 9.1952 0.8386 5.1081 23 6 9.3221 -0.1407 4.1402 24 6 10.4236 -1.1638 4.2447 25 6 8.4437 -0.1792 3.0752 26 6 8.5860 -1.2438 2.0180 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4026 -0.9313 32 1 1.4509 1.6249 2.5215 33 1 3.0237 1.1747 3.2227 34 1 2.5631 5.5739 4.8189 35 1 6.8442 0.4371 1.0305 36 1 6.5125 2.4787 3.8858 37 1 8.0835 2.5374 5.7789 38 1 9.8862 0.8692 5.9375 39 1 11.3125 -0.7943 3.7334 40 1 10.6561 -1.3416 5.2947 41 1 10.0992 -2.0957 3.7816 42 1 9.2433 -0.8840 1.2264 43 1 9.0117 -2.1432 2.4630 44 1 7.6061 -1.4740 1.5999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293080572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:26 Heat of formation + Delta-G solvation = -3.855807 kcal Electronic energy + Delta-G solvation = -26726.835072 eV Core-core repulsion = 23031.633719 eV Total energy + Delta-G solvation = -3695.201353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72492 -39.40856 -37.84100 -36.06545 -34.66986 -33.34065 -33.21425 -32.13790 -30.67289 -28.19516 -27.55544 -26.48801 -26.24030 -23.90981 -22.47160 -21.06941 -20.96711 -19.83565 -19.09531 -17.42761 -17.04248 -16.68796 -16.06499 -15.63130 -15.50871 -15.43810 -14.78124 -14.56662 -14.25044 -14.05765 -13.68087 -13.46710 -13.19688 -12.92914 -12.88346 -12.75276 -12.53077 -12.35860 -12.13931 -11.90264 -11.75794 -11.63322 -11.34683 -11.20576 -10.99790 -10.88977 -10.65053 -10.47308 -10.21116 -9.98724 -9.56707 -9.30787 -8.74014 -8.51848 -8.36652 -8.03747 -7.81501 -6.07678 -4.04922 1.37080 1.55252 2.09876 2.32000 2.94047 3.31162 3.35922 3.39458 3.70368 3.99565 4.06001 4.41886 4.82202 4.85885 4.94771 5.07711 5.16753 5.17383 5.26689 5.36082 5.42970 5.46217 5.60000 5.63066 5.72246 5.78097 5.81175 5.88871 5.99221 6.00572 6.14098 6.27903 6.36858 6.47328 6.64194 6.70341 6.75298 6.78302 6.84381 6.91215 7.12718 7.28612 7.48693 7.55994 7.84153 8.20578 8.45024 8.57178 8.92130 9.52831 11.05530 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.004859 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.790266 B = 5760.824605 C = 7511.516717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.139 3.861 4 N -0.551 5.551 5 C 0.200 3.800 6 C -0.515 4.515 7 H 0.072 0.928 8 C 0.082 3.918 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.511 3.489 15 O -0.554 6.554 16 C 0.492 3.508 17 O -0.436 6.436 18 N -0.658 5.658 19 C 0.156 3.844 20 C -0.122 4.122 21 C -0.102 4.102 22 C -0.138 4.138 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.117 4.117 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.415 0.585 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -12.246 -2.613 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.180 4.180 3 C 0.017 3.983 4 N -0.281 5.281 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.435 6.435 16 C 0.273 3.727 17 O -0.304 6.304 18 N -0.306 5.306 19 C 0.062 3.938 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.157 4.157 23 C -0.078 4.078 24 C -0.169 4.169 25 C -0.120 4.120 26 C -0.173 4.173 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.813 -11.971 -2.263 15.036 hybrid contribution -0.394 -0.338 0.504 0.724 sum 8.419 -12.309 -1.759 15.016 Atomic orbital electron populations 1.23831 0.95732 1.01851 1.00980 1.23321 0.96133 0.99031 0.99484 1.20639 0.92234 0.95395 0.90010 1.47905 1.07362 1.60197 1.12600 1.20314 0.95403 0.97596 0.78711 1.21068 1.39080 0.92196 1.02955 0.90971 1.24701 0.95236 0.94559 0.97602 1.69887 1.47328 1.09943 1.26387 0.86915 0.80055 0.80115 0.82975 1.19780 1.21328 1.19193 1.19779 0.83711 0.79607 0.87545 1.90661 1.78789 1.46502 1.27556 1.20316 0.82808 0.79918 0.89627 1.90916 1.76730 1.36607 1.26129 1.43167 1.08568 1.66498 1.12380 1.17563 0.91170 0.94954 0.90149 1.21563 1.00301 0.98001 0.94290 1.21052 0.94380 0.98747 0.97866 1.20946 0.99289 0.96153 0.99277 1.19449 0.96776 0.97217 0.94311 1.20808 0.96420 0.97369 1.02289 1.19456 0.97539 0.96903 0.98067 1.20787 1.02535 0.96976 0.97020 0.88217 0.88627 0.87542 0.89116 0.89241 0.95099 0.92628 0.92648 0.74753 0.83206 0.85784 0.86385 0.91356 0.91773 0.91340 0.91237 0.90973 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 14.32 29.01 0.42 -2.01 16 2 C -0.16 -2.41 9.84 -36.03 -0.35 -2.77 16 3 C 0.14 2.41 5.83 -5.20 -0.03 2.38 16 4 N -0.55 -11.35 2.46 -176.99 -0.44 -11.79 16 5 C 0.20 4.66 3.85 -5.20 -0.02 4.64 16 6 C -0.51 -14.05 8.34 -34.44 -0.29 -14.34 16 7 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 8 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 9 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 10 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.51 10.38 7.67 -11.63 -0.09 10.29 16 15 O -0.55 -11.09 16.04 5.49 0.09 -11.01 16 16 C 0.49 9.91 7.58 -11.63 -0.09 9.83 16 17 O -0.44 -10.09 9.46 5.47 0.05 -10.04 16 18 N -0.66 -11.02 4.76 -10.30 -0.05 -11.07 16 19 C 0.16 2.57 6.30 -83.75 -0.53 2.04 16 20 C -0.12 -2.16 8.71 -39.38 -0.34 -2.51 16 21 C -0.10 -1.54 10.04 -39.61 -0.40 -1.93 16 22 C -0.14 -1.78 9.70 -39.54 -0.38 -2.17 16 23 C -0.08 -0.96 5.88 -104.66 -0.62 -1.57 16 24 C -0.11 -1.00 9.60 36.01 0.35 -0.66 16 25 C -0.12 -1.59 5.90 -104.41 -0.62 -2.21 16 26 C -0.12 -1.23 9.06 36.01 0.33 -0.91 16 27 H 0.10 1.25 7.84 -52.49 -0.41 0.83 16 28 H 0.10 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 30 H 0.09 1.54 7.76 -51.93 -0.40 1.13 16 31 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.06 1.35 5.27 -51.92 -0.27 1.08 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.42 6.06 7.28 -40.82 -0.30 5.76 16 36 H 0.15 3.15 6.11 -52.48 -0.32 2.83 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16 44 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -31.61 363.70 -7.51 -39.12 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.99 Total: 8.47 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.76 Total: 0.32 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.29 Total: -49.05 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.14 Total: -21.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.61 -7.51 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293080572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.262 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds