Wall clock time and date at job start Tue Mar 31 2020 12:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00010 * 2 1 4 4 N 1.46499 * 109.46932 * 125.00047 * 3 2 1 5 5 C 1.46504 * 120.00386 * 274.82830 * 4 3 2 6 6 C 1.50690 * 109.47446 * 263.67045 * 5 4 3 7 7 H 1.08007 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00040 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 119.99776 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46881 * 89.99979 * 10 8 6 12 12 H 1.48498 * 109.47334 * 209.99945 * 10 8 6 13 13 H 1.48503 * 109.47282 * 330.00192 * 10 8 6 14 14 C 1.34778 * 119.99803 * 94.83352 * 4 3 2 15 15 O 1.21357 * 120.00336 * 354.62369 * 14 4 3 16 16 C 1.49355 * 120.00029 * 174.61983 * 14 4 3 17 17 O 1.21376 * 120.00137 * 0.24247 * 16 14 4 18 18 N 1.34777 * 120.00231 * 180.23775 * 16 14 4 19 19 C 1.39721 * 120.00217 * 184.85476 * 18 16 14 20 20 C 1.38948 * 120.07728 * 326.25153 * 19 18 16 21 21 C 1.38071 * 119.92658 * 180.02562 * 20 19 18 22 22 C 1.38319 * 120.07336 * 0.24448 * 21 20 19 23 23 C 1.38268 * 120.15171 * 359.49654 * 22 21 20 24 24 C 1.50700 * 119.96168 * 180.27568 * 23 22 21 25 25 C 1.38110 * 120.07650 * 0.51065 * 23 22 21 26 26 C 1.50709 * 120.04021 * 179.76939 * 25 23 22 27 27 H 1.07990 * 120.00163 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99888 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00045 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47046 * 5.00598 * 3 2 1 31 31 H 1.08995 * 109.47285 * 245.00156 * 3 2 1 32 32 H 1.08998 * 109.46466 * 23.67860 * 5 4 3 33 33 H 1.09007 * 109.46969 * 143.66833 * 5 4 3 34 34 H 0.96998 * 119.99592 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99815 * 4.85544 * 18 16 14 36 36 H 1.08004 * 120.03556 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.96527 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.92122 * 179.72971 * 22 21 20 39 39 H 1.09000 * 109.47121 * 270.23242 * 24 23 22 40 40 H 1.08998 * 109.47498 * 30.22769 * 24 23 22 41 41 H 1.08999 * 109.47647 * 150.23440 * 24 23 22 42 42 H 1.08996 * 109.46609 * 269.97286 * 26 25 23 43 43 H 1.09003 * 109.47027 * 29.97194 * 26 25 23 44 44 H 1.08995 * 109.47278 * 149.97430 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5294 1.7656 2.4515 6 6 2.8598 3.2229 2.6464 7 1 3.3647 3.7714 1.8649 8 6 2.5165 3.8564 3.8219 9 7 2.8043 5.1284 3.9918 10 14 1.6426 2.9080 5.1732 11 1 2.6482 2.3030 6.0832 12 1 0.7713 3.8321 5.9427 13 1 0.8135 1.8347 4.5682 14 6 4.2768 0.9575 0.9579 15 8 4.6383 0.5062 -0.1091 16 6 5.2539 1.0981 2.0787 17 8 4.8915 1.5454 3.1472 18 7 6.5380 0.7282 1.9036 19 6 7.4283 0.7640 2.9799 20 6 7.3004 1.7434 3.9572 21 6 8.1822 1.7762 5.0191 22 6 9.1952 0.8386 5.1081 23 6 9.3221 -0.1407 4.1402 24 6 10.4236 -1.1638 4.2447 25 6 8.4437 -0.1792 3.0752 26 6 8.5860 -1.2438 2.0180 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4026 -0.9313 32 1 1.4509 1.6249 2.5215 33 1 3.0237 1.1747 3.2227 34 1 2.5631 5.5739 4.8189 35 1 6.8442 0.4371 1.0305 36 1 6.5125 2.4787 3.8858 37 1 8.0835 2.5374 5.7789 38 1 9.8862 0.8692 5.9375 39 1 11.3125 -0.7943 3.7334 40 1 10.6561 -1.3416 5.2947 41 1 10.0992 -2.0957 3.7816 42 1 9.2433 -0.8840 1.2264 43 1 9.0117 -2.1432 2.4630 44 1 7.6061 -1.4740 1.5999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293080572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:23 Heat of formation + Delta-G solvation = -22.975878 kcal Electronic energy + Delta-G solvation = -26727.664181 eV Core-core repulsion = 23031.633719 eV Total energy + Delta-G solvation = -3696.030461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.20014 -40.75021 -39.30207 -37.64105 -36.00999 -35.00492 -34.29467 -33.93171 -31.79724 -30.09427 -28.66882 -27.81928 -27.22931 -25.44946 -24.29610 -22.35375 -22.14891 -21.06193 -20.49204 -19.13522 -18.94885 -18.18986 -17.50199 -17.04621 -16.93621 -16.71443 -16.08009 -16.05807 -15.92565 -15.23402 -15.06152 -14.81751 -14.58029 -14.42615 -14.12680 -14.00197 -13.78904 -13.61728 -13.46534 -13.18527 -12.93186 -12.92087 -12.74001 -12.63036 -12.35783 -12.25934 -12.16851 -11.97338 -11.89161 -11.69832 -11.29213 -10.78050 -10.53381 -10.17822 -9.71510 -9.48282 -9.08340 -8.27179 -6.28189 0.05596 0.41275 0.63392 1.08823 1.33954 1.39146 1.44131 1.59443 2.15629 2.35377 2.55580 2.79824 3.10507 3.31145 3.87423 3.91398 4.00038 4.10856 4.14510 4.24810 4.39589 4.44089 4.49547 4.62726 4.72965 4.74464 4.77656 4.85391 4.89781 4.94459 4.98645 5.02960 5.11637 5.26755 5.34682 5.35651 5.47002 5.49558 5.60960 5.66006 5.67977 5.80995 6.01197 6.09604 6.11209 6.34585 6.67538 6.71619 6.99183 7.33057 8.89870 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.004859 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.790266 B = 5760.824605 C = 7511.516717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.558 5.558 5 C 0.215 3.785 6 C -0.506 4.506 7 H 0.026 0.974 8 C 0.025 3.975 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.239 1.239 14 C 0.508 3.492 15 O -0.552 6.552 16 C 0.487 3.513 17 O -0.475 6.475 18 N -0.641 5.641 19 C 0.130 3.870 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.074 4.074 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.116 4.116 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.425 0.575 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.807 -15.605 -2.347 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.287 5.287 5 C 0.093 3.907 6 C -0.545 4.545 7 H 0.045 0.955 8 C -0.173 4.173 9 N -0.587 5.587 10 Si 0.759 3.241 11 H -0.205 1.205 12 H -0.206 1.206 13 H -0.162 1.162 14 C 0.291 3.709 15 O -0.433 6.433 16 C 0.269 3.731 17 O -0.346 6.346 18 N -0.289 5.289 19 C 0.036 3.964 20 C -0.173 4.173 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.166 4.166 25 C -0.115 4.115 26 C -0.172 4.172 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.595 -15.366 -2.053 18.231 hybrid contribution -0.489 0.714 0.341 0.930 sum 9.106 -14.652 -1.713 17.336 Atomic orbital electron populations 1.24104 0.94953 1.03389 0.97314 1.23117 0.96754 0.97589 1.02773 1.20812 0.91910 0.97070 0.88726 1.47931 1.08060 1.60135 1.12577 1.19958 0.95822 0.94673 0.80205 1.21175 1.37621 0.94064 1.01601 0.95523 1.25534 0.96300 0.95335 1.00140 1.70035 1.49456 1.11911 1.27291 0.85910 0.79031 0.79443 0.79733 1.20503 1.20642 1.16177 1.19875 0.83808 0.79581 0.87657 1.90643 1.78721 1.46520 1.27374 1.20446 0.83859 0.79691 0.89101 1.90901 1.77595 1.38751 1.27395 1.43009 1.07568 1.65200 1.13166 1.17766 0.92435 0.96170 0.90046 1.21327 1.00722 0.98571 0.96698 1.21189 0.94875 0.99965 0.97316 1.21323 0.98416 0.94937 1.00132 1.19984 0.96999 0.97443 0.93033 1.20903 0.95348 0.96554 1.03830 1.19833 0.96130 0.96441 0.99128 1.20884 1.02794 0.96878 0.96673 0.87627 0.86020 0.87474 0.89219 0.89288 0.93692 0.93138 0.92630 0.73598 0.87751 0.85309 0.83133 0.89666 0.90231 0.89993 0.89423 0.88510 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 14.32 67.78 0.97 -2.75 16 2 C -0.18 -5.23 9.84 25.65 0.25 -4.98 16 3 C 0.14 4.69 5.83 85.63 0.50 5.19 16 4 N -0.56 -23.42 2.46 -832.22 -2.05 -25.47 16 5 C 0.21 10.18 3.85 85.63 0.33 10.50 16 6 C -0.51 -28.92 8.34 25.60 0.21 -28.70 16 7 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 8 C 0.02 1.45 5.47 84.66 0.46 1.91 16 9 N -0.95 -59.60 13.96 21.45 0.30 -59.31 16 10 Si 0.93 44.75 27.47 68.60 1.88 46.63 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 14 C 0.51 21.24 7.67 87.24 0.67 21.91 16 15 O -0.55 -22.27 16.04 -3.27 -0.05 -22.32 16 16 C 0.49 20.65 7.58 87.24 0.66 21.31 16 17 O -0.48 -23.45 9.46 -3.33 -0.03 -23.48 16 18 N -0.64 -22.25 4.76 -304.83 -1.45 -23.70 16 19 C 0.13 4.37 6.30 38.22 0.24 4.61 16 20 C -0.15 -5.82 8.71 22.40 0.20 -5.63 16 21 C -0.11 -3.56 10.04 22.25 0.22 -3.33 16 22 C -0.13 -3.10 9.70 22.30 0.22 -2.88 16 23 C -0.07 -1.63 5.88 -19.89 -0.12 -1.75 16 24 C -0.11 -1.45 9.60 71.24 0.68 -0.77 16 25 C -0.11 -2.89 5.90 -19.73 -0.12 -3.01 16 26 C -0.12 -2.13 9.06 71.24 0.65 -1.48 16 27 H 0.11 2.34 7.84 -2.92 -0.02 2.32 16 28 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.11 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.09 3.05 7.76 -2.39 -0.02 3.03 16 31 H 0.09 3.02 7.36 -2.39 -0.02 3.00 16 32 H 0.05 2.01 7.08 -2.39 -0.02 2.00 16 33 H 0.05 2.50 5.27 -2.38 -0.01 2.49 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.42 12.56 7.28 -92.71 -0.68 11.89 16 36 H 0.10 4.91 6.11 -2.91 -0.02 4.89 16 37 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 41 H 0.08 0.90 5.94 -2.39 -0.01 0.89 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.31 5.95 -2.39 -0.01 1.30 16 44 H 0.06 1.17 7.16 -2.39 -0.02 1.15 16 Total: -1.00 -73.19 363.70 4.93 -68.27 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.29 Total: 29.22 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.03 Total: 10.16 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.20 Total: -108.48 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.08 Total: -45.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -73.19 4.93 -68.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293080572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.291 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds