Wall clock time and date at job start Tue Mar 31 2020 12:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99624 * 2 1 4 4 N 1.46501 * 109.46916 * 125.00247 * 3 2 1 5 5 C 1.46498 * 120.00045 * 274.83708 * 4 3 2 6 6 C 1.50706 * 109.47212 * 263.68543 * 5 4 3 7 7 H 1.08005 * 119.99494 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00177 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99639 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00085 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46774 * 90.00203 * 10 8 6 12 12 H 1.48501 * 109.47137 * 209.99882 * 10 8 6 13 13 H 1.48496 * 109.47116 * 330.00360 * 10 8 6 14 14 C 1.34781 * 120.00069 * 94.83469 * 4 3 2 15 15 O 1.21358 * 119.99807 * 354.62087 * 14 4 3 16 16 C 1.49351 * 120.00122 * 174.62868 * 14 4 3 17 17 O 1.21382 * 119.99717 * 0.29581 * 16 14 4 18 18 N 1.34769 * 120.00261 * 180.29946 * 16 14 4 19 19 C 1.39725 * 120.00184 * 184.82175 * 18 16 14 20 20 C 1.38952 * 120.07647 * 324.62481 * 19 18 16 21 21 C 1.38077 * 119.92200 * 180.22910 * 20 19 18 22 22 C 1.38318 * 120.07484 * 359.51655 * 21 20 19 23 23 C 1.50695 * 119.92085 * 180.20732 * 22 21 20 24 24 C 1.38277 * 120.15315 * 0.46405 * 22 21 20 25 25 C 1.50695 * 119.95920 * 179.76900 * 24 22 21 26 26 C 1.38112 * 120.07163 * 359.78990 * 24 22 21 27 27 H 1.07997 * 119.99664 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00591 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47251 * 5.00410 * 3 2 1 31 31 H 1.09000 * 109.46976 * 244.99841 * 3 2 1 32 32 H 1.09002 * 109.47296 * 23.68435 * 5 4 3 33 33 H 1.08998 * 109.47304 * 143.68631 * 5 4 3 34 34 H 0.97008 * 119.99608 * 179.97438 * 9 8 6 35 35 H 0.96998 * 120.00013 * 4.82352 * 18 16 14 36 36 H 1.07995 * 120.03975 * 359.95757 * 20 19 18 37 37 H 1.07995 * 119.96227 * 179.74877 * 21 20 19 38 38 H 1.08996 * 109.47639 * 270.24982 * 23 22 21 39 39 H 1.09000 * 109.47169 * 30.25627 * 23 22 21 40 40 H 1.09004 * 109.47177 * 150.25053 * 23 22 21 41 41 H 1.09006 * 109.47179 * 270.02117 * 25 24 22 42 42 H 1.08996 * 109.47774 * 30.01917 * 25 24 22 43 43 H 1.09004 * 109.47262 * 150.02466 * 25 24 22 44 44 H 1.08008 * 120.03279 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5294 1.7655 2.4515 6 6 2.8591 3.2231 2.6463 7 1 3.3645 3.7714 1.8651 8 6 2.5157 3.8564 3.8218 9 7 2.8039 5.1282 3.9920 10 14 1.6409 2.9081 5.1727 11 1 2.6461 2.3026 6.0830 12 1 0.7698 3.8325 5.9421 13 1 0.8118 1.8353 4.5672 14 6 4.2769 0.9577 0.9579 15 8 4.6383 0.5064 -0.1092 16 6 5.2539 1.0982 2.0787 17 8 4.8911 1.5444 3.1476 18 7 6.5383 0.7296 1.9033 19 6 7.4288 0.7659 2.9794 20 6 7.3210 1.7650 3.9391 21 6 8.2056 1.8006 4.9986 22 6 9.1919 0.8374 5.1108 23 6 10.1527 0.8769 6.2711 24 6 9.3018 -0.1585 4.1578 25 6 10.3813 -1.2026 4.2815 26 6 8.4235 -0.1970 3.0926 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6245 2.5216 33 1 3.0239 1.1749 3.2227 34 1 2.5619 5.5740 4.8189 35 1 6.8446 0.4392 1.0300 36 1 6.5489 2.5154 3.8540 37 1 8.1250 2.5792 5.7427 38 1 11.0205 1.4798 6.0040 39 1 9.6580 1.3158 7.1376 40 1 10.4743 -0.1366 6.5112 41 1 11.2783 -0.8609 3.7649 42 1 10.6090 -1.3670 5.3347 43 1 10.0376 -2.1354 3.8342 44 1 8.5102 -0.9749 2.3484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293184305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:38 Heat of formation + Delta-G solvation = -5.792209 kcal Electronic energy + Delta-G solvation = -26433.851927 eV Core-core repulsion = 22738.566605 eV Total energy + Delta-G solvation = -3695.285322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.64185 -39.38578 -37.92070 -36.08500 -34.89125 -33.31477 -32.38285 -32.13808 -31.40464 -28.18778 -27.53789 -26.85691 -25.74495 -23.50455 -22.28396 -22.15536 -20.60262 -19.76250 -19.12637 -17.40725 -17.03907 -16.69441 -16.01241 -15.64839 -15.41972 -15.26535 -14.81021 -14.54723 -14.18884 -14.09411 -13.81699 -13.50195 -13.23109 -12.92317 -12.89162 -12.83666 -12.46642 -12.35689 -12.13387 -11.91982 -11.77863 -11.62989 -11.34528 -11.19463 -11.00187 -10.91280 -10.65217 -10.46528 -10.20453 -9.85898 -9.56389 -9.30469 -8.76106 -8.56773 -8.47012 -8.02159 -7.75479 -6.07454 -4.04640 1.35339 1.56141 2.09070 2.32482 2.94622 3.31321 3.36088 3.39599 3.70181 3.98665 4.06443 4.42114 4.83038 4.86630 4.95085 5.13218 5.14612 5.17902 5.26992 5.36487 5.37772 5.44780 5.61267 5.63156 5.72640 5.76340 5.80175 5.94313 5.99187 6.00285 6.14482 6.19320 6.37414 6.50264 6.57991 6.69526 6.75776 6.80964 6.84828 6.91306 7.12933 7.27779 7.49386 7.56374 7.84877 8.21593 8.45541 8.57985 8.92372 9.53129 11.05762 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.004464 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.576612 B = 6270.194027 C = 7946.577530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.139 3.861 4 N -0.552 5.552 5 C 0.200 3.800 6 C -0.515 4.515 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.511 3.489 15 O -0.554 6.554 16 C 0.492 3.508 17 O -0.437 6.437 18 N -0.660 5.660 19 C 0.152 3.848 20 C -0.118 4.118 21 C -0.097 4.097 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.415 0.585 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -11.518 -1.134 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.180 4.180 3 C 0.017 3.983 4 N -0.281 5.281 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.435 6.435 16 C 0.274 3.726 17 O -0.305 6.305 18 N -0.309 5.309 19 C 0.057 3.943 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.169 4.169 24 C -0.076 4.076 25 C -0.169 4.169 26 C -0.165 4.165 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.252 0.748 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.389 -11.242 -0.773 14.667 hybrid contribution -0.446 -0.405 0.360 0.702 sum 8.943 -11.647 -0.413 14.690 Atomic orbital electron populations 1.23830 0.95731 1.01847 1.00995 1.23325 0.96136 0.99039 0.99470 1.20641 0.92235 0.95387 0.90017 1.47904 1.07367 1.60229 1.12589 1.20315 0.95399 0.97596 0.78726 1.21072 1.39054 0.92198 1.02954 0.90975 1.24699 0.95242 0.94562 0.97594 1.69890 1.47327 1.09951 1.26402 0.86915 0.80056 0.80118 0.82975 1.19787 1.21327 1.19187 1.19784 0.83709 0.79590 0.87554 1.90662 1.78795 1.46483 1.27565 1.20303 0.82808 0.79894 0.89617 1.90925 1.76731 1.36700 1.26135 1.43159 1.08553 1.66812 1.12355 1.17711 0.91450 0.94988 0.90118 1.21510 0.99865 0.97971 0.94486 1.20951 0.94259 0.98327 0.98006 1.19711 0.98005 0.96134 0.97162 1.20796 0.97994 1.02258 0.95814 1.19417 0.97098 0.96742 0.94391 1.20810 0.96761 0.96833 1.02524 1.20706 0.97560 0.98537 0.99718 0.88631 0.88216 0.87540 0.89117 0.89245 0.95103 0.92616 0.92657 0.74767 0.83401 0.85774 0.91521 0.91783 0.91515 0.91336 0.91241 0.91819 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 14.32 29.01 0.42 -2.02 16 2 C -0.16 -2.42 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.42 5.83 -5.19 -0.03 2.39 16 4 N -0.55 -11.40 2.46 -176.97 -0.44 -11.83 16 5 C 0.20 4.67 3.85 -5.19 -0.02 4.65 16 6 C -0.51 -14.07 8.34 -34.44 -0.29 -14.36 16 7 H 0.07 2.19 8.06 -52.48 -0.42 1.76 16 8 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 9 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 10 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.51 10.42 7.67 -11.63 -0.09 10.34 16 15 O -0.55 -11.16 16.04 5.49 0.09 -11.07 16 16 C 0.49 9.94 7.57 -11.64 -0.09 9.86 16 17 O -0.44 -10.14 9.57 5.47 0.05 -10.09 16 18 N -0.66 -11.02 5.32 -10.30 -0.05 -11.08 16 19 C 0.15 2.47 6.29 -83.75 -0.53 1.94 16 20 C -0.12 -2.10 8.69 -39.38 -0.34 -2.44 16 21 C -0.10 -1.46 9.69 -39.61 -0.38 -1.85 16 22 C -0.11 -1.42 5.88 -104.58 -0.62 -2.03 16 23 C -0.11 -1.09 9.60 36.00 0.35 -0.74 16 24 C -0.08 -0.94 5.88 -104.66 -0.62 -1.56 16 25 C -0.11 -1.00 9.60 36.00 0.35 -0.66 16 26 C -0.14 -1.95 9.62 -39.38 -0.38 -2.33 16 27 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.09 1.54 7.76 -51.93 -0.40 1.14 16 31 H 0.09 1.51 7.36 -51.93 -0.38 1.12 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.06 1.36 5.27 -51.93 -0.27 1.09 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.42 5.96 8.30 -40.82 -0.34 5.62 16 36 H 0.15 3.09 6.24 -52.49 -0.33 2.76 16 37 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 43 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -31.76 366.49 -7.53 -39.29 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.09 Total: 8.14 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.72 Total: 0.61 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.28 Total: -49.13 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.14 Total: -21.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.76 -7.53 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293184305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.498 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds